Author: S-PLUS original by Phil Everson; R port by Roger D. Peng
Diff between tlnise versions 1.0-1 dated 2009-05-14 and 1.1 dated 2009-09-28
Title: Two-level normal independent sampling estimation
Description: Functions for two level normal models as described in
Everson and Morris (2000). J. R. Statist. Soc. B, 62 prt 2,
pp.399--412.
tlnise-1.0-1/tlnise/inst/LICENSE |only
tlnise-1.1/tlnise/DESCRIPTION | 10 ++---
tlnise-1.1/tlnise/LICENSE |only
tlnise-1.1/tlnise/R/TLNise.mv1.R | 7 ++-
tlnise-1.1/tlnise/R/init.R | 5 --
tlnise-1.1/tlnise/man/tlnise.Rd | 13 +-----
tlnise-1.1/tlnise/src/tlnisemv1.f | 3 +
tlnise-1.1/tlnise/tests/reg-tests.R | 2 -
tlnise-1.1/tlnise/tests/reg-tests.Rout.save | 56 +++++++++++++---------------
9 files changed, 42 insertions(+), 54 deletions(-)
Author: Holger Hoefling
Title: Path algorithm for the general Fused Lasso Signal Approximator
Description: This package implements a path algorithm for the Fused
Lasso Signal Approximator. For more details see the help files
Diff between flsa versions 1.02 dated 2009-09-28 and 1.03 dated 2009-09-28
DESCRIPTION | 6 +++--- src/FLSA.cc | 6 +++--- src/flsaBackwards.h | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Author: Diethelm Wuertz and Yohan Chalabi
Title: Rmetrics - Financial Time Series Objects
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Diff between timeSeries versions 2100.83 dated 2009-04-20 and 2100.84 dated 2009-09-28
timeSeries-2100.83/timeSeries/R/colCum.R |only timeSeries-2100.83/timeSeries/R/colStats.R |only timeSeries-2100.83/timeSeries/R/cumulated.R |only timeSeries-2100.83/timeSeries/R/daily.R |only timeSeries-2100.83/timeSeries/R/description.R |only timeSeries-2100.83/timeSeries/R/drawdowns.R |only timeSeries-2100.83/timeSeries/R/dummy.R |only timeSeries-2100.83/timeSeries/R/durations.R |only timeSeries-2100.83/timeSeries/R/is.R |only timeSeries-2100.83/timeSeries/R/isUnivariate.R |only timeSeries-2100.83/timeSeries/R/methods-DataPart.R |only timeSeries-2100.83/timeSeries/R/methods-aggregate.R |only timeSeries-2100.83/timeSeries/R/methods-align.R |only timeSeries-2100.83/timeSeries/R/methods-apply.R |only timeSeries-2100.83/timeSeries/R/methods-attach.R |only timeSeries-2100.83/timeSeries/R/methods-bind.R |only timeSeries-2100.83/timeSeries/R/methods-comment.R |only timeSeries-2100.83/timeSeries/R/methods-dim.R |only timeSeries-2100.83/timeSeries/R/methods-finCenter.R |only 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timeSeries-2100.83/timeSeries/R/readSeries.R |only timeSeries-2100.83/timeSeries/R/signalCounts.R |only timeSeries-2100.83/timeSeries/R/spreads.R |only timeSeries-2100.83/timeSeries/R/time.R |only timeSeries-2100.83/timeSeries/R/turnpoints.R |only timeSeries-2100.83/timeSeries/data/LPP2005REC.csv |only timeSeries-2100.83/timeSeries/data/msft.dat.csv |only timeSeries-2100.83/timeSeries/data/usdchf.csv |only timeSeries-2100.83/timeSeries/man/apply.Rd |only timeSeries-2100.83/timeSeries/man/colCum.Rd |only timeSeries-2100.83/timeSeries/man/colStats.Rd |only timeSeries-2100.83/timeSeries/man/cumulated.Rd |only timeSeries-2100.83/timeSeries/man/daily.Rd |only timeSeries-2100.83/timeSeries/man/description.Rd |only timeSeries-2100.83/timeSeries/man/drawdowns.Rd |only timeSeries-2100.83/timeSeries/man/durations.Rd |only timeSeries-2100.83/timeSeries/man/finCenter.Rd |only timeSeries-2100.83/timeSeries/man/is.Rd |only timeSeries-2100.83/timeSeries/man/isUnivariate.Rd |only 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timeSeries-2100.83/timeSeries/man/series.Rd |only timeSeries-2100.83/timeSeries/man/spreads.Rd |only timeSeries-2100.83/timeSeries/man/time.Rd |only timeSeries-2100.84/timeSeries/ChangeLog | 267 +++---- timeSeries-2100.84/timeSeries/DESCRIPTION | 12 timeSeries-2100.84/timeSeries/NAMESPACE | 171 +--- timeSeries-2100.84/timeSeries/R/AllClass.R | 56 + timeSeries-2100.84/timeSeries/R/AllGeneric.R | 82 +- timeSeries-2100.84/timeSeries/R/base-Extract.R |only timeSeries-2100.84/timeSeries/R/base-apply.R |only timeSeries-2100.84/timeSeries/R/base-attach.R |only timeSeries-2100.84/timeSeries/R/base-cbind.R |only timeSeries-2100.84/timeSeries/R/base-colCumsums.R |only timeSeries-2100.84/timeSeries/R/base-colSums.R |only timeSeries-2100.84/timeSeries/R/base-comment.R |only timeSeries-2100.84/timeSeries/R/base-diff.R |only timeSeries-2100.84/timeSeries/R/base-dim.R |only timeSeries-2100.84/timeSeries/R/base-merge.R |only timeSeries-2100.84/timeSeries/R/base-rank.R |only timeSeries-2100.84/timeSeries/R/base-rev.R |only timeSeries-2100.84/timeSeries/R/base-rowCumsums.R |only timeSeries-2100.84/timeSeries/R/base-sample.R |only timeSeries-2100.84/timeSeries/R/base-scale.R |only timeSeries-2100.84/timeSeries/R/base-sort.R |only timeSeries-2100.84/timeSeries/R/base-start.R |only timeSeries-2100.84/timeSeries/R/base-subset.R |only timeSeries-2100.84/timeSeries/R/base-t.R |only timeSeries-2100.84/timeSeries/R/fin-align.R |only timeSeries-2100.84/timeSeries/R/fin-cumulated.R |only timeSeries-2100.84/timeSeries/R/fin-daily.R |only timeSeries-2100.84/timeSeries/R/fin-drawdowns.R |only timeSeries-2100.84/timeSeries/R/fin-durations.R |only timeSeries-2100.84/timeSeries/R/fin-monthly.R |only timeSeries-2100.84/timeSeries/R/fin-orderColnames.R |only timeSeries-2100.84/timeSeries/R/fin-orderStatistics.R |only timeSeries-2100.84/timeSeries/R/fin-periodical.R |only timeSeries-2100.84/timeSeries/R/fin-returns.R |only timeSeries-2100.84/timeSeries/R/fin-rollmean.R |only timeSeries-2100.84/timeSeries/R/fin-smooth.R |only timeSeries-2100.84/timeSeries/R/fin-splits.R |only timeSeries-2100.84/timeSeries/R/fin-spreads.R |only timeSeries-2100.84/timeSeries/R/fin-turnpoints.R |only timeSeries-2100.84/timeSeries/R/graphics-plot.R |only timeSeries-2100.84/timeSeries/R/methods-as.R | 323 +++++--- timeSeries-2100.84/timeSeries/R/methods-is.R |only timeSeries-2100.84/timeSeries/R/methods-mathOps.R | 173 ++-- timeSeries-2100.84/timeSeries/R/methods-show.R | 117 ++- timeSeries-2100.84/timeSeries/R/old2new.R | 9 timeSeries-2100.84/timeSeries/R/stats-aggregate.R |only timeSeries-2100.84/timeSeries/R/stats-filter.R |only timeSeries-2100.84/timeSeries/R/stats-lag.R |only timeSeries-2100.84/timeSeries/R/stats-model.frame.R |only timeSeries-2100.84/timeSeries/R/stats-na.contiguous.R |only timeSeries-2100.84/timeSeries/R/stats-na.omit.R |only timeSeries-2100.84/timeSeries/R/stats-window.R |only timeSeries-2100.84/timeSeries/R/timeSeries-description.R |only timeSeries-2100.84/timeSeries/R/timeSeries-dummy.R |only timeSeries-2100.84/timeSeries/R/timeSeries-finCenter.R |only timeSeries-2100.84/timeSeries/R/timeSeries-getDataPart.R |only timeSeries-2100.84/timeSeries/R/timeSeries-isOHLC.R |only timeSeries-2100.84/timeSeries/R/timeSeries-isRegular.R |only timeSeries-2100.84/timeSeries/R/timeSeries-isUnivariate.R |only timeSeries-2100.84/timeSeries/R/timeSeries-readSeries.R |only timeSeries-2100.84/timeSeries/R/timeSeries-series.R |only timeSeries-2100.84/timeSeries/R/timeSeries-signalCounts.R |only timeSeries-2100.84/timeSeries/R/timeSeries-time.R |only timeSeries-2100.84/timeSeries/R/timeSeries.R | 360 ++++++---- timeSeries-2100.84/timeSeries/R/utils-head.R |only timeSeries-2100.84/timeSeries/R/utils-str.R |only timeSeries-2100.84/timeSeries/data/LPP2005REC.rda |only timeSeries-2100.84/timeSeries/data/USDCHF.rda |only timeSeries-2100.84/timeSeries/inst/unitTests/runit.NA.R | 17 timeSeries-2100.84/timeSeries/inst/unitTests/runit.Omit.R | 16 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timeSeries-2100.84/timeSeries/inst/unitTests/runit.daily.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.dim.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.drawdowns.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.durations.R | 12 timeSeries-2100.84/timeSeries/inst/unitTests/runit.lag.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.mathOps.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.merge.R | 25 timeSeries-2100.84/timeSeries/inst/unitTests/runit.methods-plot.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.methods-print.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.methods-summary.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.model.frame.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.monthly.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.na.contiguous.R |only timeSeries-2100.84/timeSeries/inst/unitTests/runit.order.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.periodical.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.rank.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.returns.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.rowCum.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.signalCounts.R | 24 timeSeries-2100.84/timeSeries/inst/unitTests/runit.spreads.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.subset.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.time.R | 9 timeSeries-2100.84/timeSeries/inst/unitTests/runit.timeSeries.R | 14 timeSeries-2100.84/timeSeries/man/base-apply.Rd |only timeSeries-2100.84/timeSeries/man/base-attach.Rd |only timeSeries-2100.84/timeSeries/man/base-cbind.Rd |only timeSeries-2100.84/timeSeries/man/base-colCumsums.Rd |only timeSeries-2100.84/timeSeries/man/base-colSums.Rd |only timeSeries-2100.84/timeSeries/man/base-dim.Rd |only timeSeries-2100.84/timeSeries/man/base-rank.Rd |only timeSeries-2100.84/timeSeries/man/base-rowCumsums.Rd |only 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timeSeries-2100.84/timeSeries/man/timeSeries.Rd | 33 timeSeries-2100.84/timeSeries/man/utils-str.Rd |only 229 files changed, 1142 insertions(+), 1213 deletions(-)
Author: Diethelm Wuertz and Yohan Chalabi with contributions from
Martin Maechler, Joe W. Byers, and others
Title: Rmetrics - Chronological and Calendarical Objects
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Diff between timeDate versions 290.85 dated 2009-04-16 and 2100.86 dated 2009-09-28
timeDate-2100.86/timeDate/ChangeLog | 270 +++++++---- timeDate-2100.86/timeDate/DESCRIPTION | 13 timeDate-2100.86/timeDate/NAMESPACE | 42 - timeDate-2100.86/timeDate/R/AllClass.R |only timeDate-2100.86/timeDate/R/AllGeneric.R | 17 timeDate-2100.86/timeDate/R/base-c.R |only timeDate-2100.86/timeDate/R/base-diff.R |only timeDate-2100.86/timeDate/R/base-difftimeDate.R |only timeDate-2100.86/timeDate/R/base-format.R |only timeDate-2100.86/timeDate/R/base-length.R |only timeDate-2100.86/timeDate/R/base-rep.R |only timeDate-2100.86/timeDate/R/base-rev.R |only timeDate-2100.86/timeDate/R/base-round.R |only timeDate-2100.86/timeDate/R/base-sample.R |only timeDate-2100.86/timeDate/R/base-sort.R |only timeDate-2100.86/timeDate/R/base-subset.R |only timeDate-2100.86/timeDate/R/base-summary.R |only timeDate-2100.86/timeDate/R/base-unique.R |only timeDate-2100.86/timeDate/R/base-weekdays.R |only timeDate-2100.86/timeDate/R/calendar-Easter.R |only timeDate-2100.86/timeDate/R/calendar-align.R |only 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timeDate-290.85/timeDate/R/c.R |only timeDate-290.85/timeDate/R/class-timeDate.R |only timeDate-290.85/timeDate/R/currentYear.R |only timeDate-290.85/timeDate/R/dayOfWeek.R |only timeDate-290.85/timeDate/R/dayOfYear.R |only timeDate-290.85/timeDate/R/diff.R |only timeDate-290.85/timeDate/R/difftimeDate.R |only timeDate-290.85/timeDate/R/firstDay.R |only timeDate-290.85/timeDate/R/genDaylightSavingTime.R |only timeDate-290.85/timeDate/R/holidayDate.R |only timeDate-290.85/timeDate/R/holidayNYSE.R |only timeDate-290.85/timeDate/R/holidayTSX.R |only timeDate-290.85/timeDate/R/holidayZURICH.R |only timeDate-290.85/timeDate/R/isBizday.R |only timeDate-290.85/timeDate/R/isWeekday.R |only timeDate-290.85/timeDate/R/julian.R |only timeDate-290.85/timeDate/R/kurtosis.R |only timeDate-290.85/timeDate/R/length.R |only timeDate-290.85/timeDate/R/listFinCenter.R |only timeDate-290.85/timeDate/R/listHolidays.R |only timeDate-290.85/timeDate/R/methods-Ops.R |only timeDate-290.85/timeDate/R/methods-align.R |only timeDate-290.85/timeDate/R/methods-atoms.R |only timeDate-290.85/timeDate/R/methods-finCenter.R |only timeDate-290.85/timeDate/R/methods-format.R |only timeDate-290.85/timeDate/R/methods-julian.R |only timeDate-290.85/timeDate/R/methods-months.R |only timeDate-290.85/timeDate/R/methods-na.R |only timeDate-290.85/timeDate/R/methods-plot.R |only timeDate-290.85/timeDate/R/methods-summary.R |only timeDate-290.85/timeDate/R/midnightStandard.R |only timeDate-290.85/timeDate/R/myFinCenter.R |only timeDate-290.85/timeDate/R/myUnits.R |only timeDate-290.85/timeDate/R/nDay.R |only timeDate-290.85/timeDate/R/onOrAfter.R |only timeDate-290.85/timeDate/R/periods.R |only timeDate-290.85/timeDate/R/rep.R |only timeDate-290.85/timeDate/R/rev.R |only timeDate-290.85/timeDate/R/round.R |only timeDate-290.85/timeDate/R/rulesFinCenter.R |only timeDate-290.85/timeDate/R/sample.R |only timeDate-290.85/timeDate/R/skewness.R |only timeDate-290.85/timeDate/R/sort.R |only timeDate-290.85/timeDate/R/start.R |only timeDate-290.85/timeDate/R/subset.R |only timeDate-290.85/timeDate/R/timeCalendar.R |only timeDate-290.85/timeDate/R/timeSequence.R |only timeDate-290.85/timeDate/R/unique.R |only timeDate-290.85/timeDate/R/whichFormat.R |only timeDate-290.85/timeDate/R/window.R |only timeDate-290.85/timeDate/inst/todo.txt |only timeDate-290.85/timeDate/man/DaylightSavingTime.Rd |only timeDate-290.85/timeDate/man/Easter.Rd |only timeDate-290.85/timeDate/man/RmetricsOptions.Rd |only timeDate-290.85/timeDate/man/Sys.timeDate.Rd |only timeDate-290.85/timeDate/man/align.Rd |only timeDate-290.85/timeDate/man/blockStart.Rd |only timeDate-290.85/timeDate/man/c.Rd |only timeDate-290.85/timeDate/man/currentYear.Rd |only timeDate-290.85/timeDate/man/dayOfWeek.Rd |only timeDate-290.85/timeDate/man/dayOfYear.Rd |only timeDate-290.85/timeDate/man/diff.Rd |only timeDate-290.85/timeDate/man/difftimeDate.Rd |only timeDate-290.85/timeDate/man/finCenter.Rd |only timeDate-290.85/timeDate/man/firstDay.Rd |only timeDate-290.85/timeDate/man/holidayDate.Rd |only timeDate-290.85/timeDate/man/holidayNYSE.Rd |only timeDate-290.85/timeDate/man/holidayTSX.Rd |only timeDate-290.85/timeDate/man/holidayZURICH.Rd |only timeDate-290.85/timeDate/man/isBizday.Rd |only timeDate-290.85/timeDate/man/isWeekday.Rd |only timeDate-290.85/timeDate/man/julian.Rd |only timeDate-290.85/timeDate/man/kurtosis.Rd |only timeDate-290.85/timeDate/man/length.Rd |only timeDate-290.85/timeDate/man/listFinCenter.Rd |only timeDate-290.85/timeDate/man/listHolidays.Rd |only timeDate-290.85/timeDate/man/methods-Ops.Rd |only timeDate-290.85/timeDate/man/methods-format.Rd |only timeDate-290.85/timeDate/man/methods-na.Rd |only timeDate-290.85/timeDate/man/methods-plot.Rd |only timeDate-290.85/timeDate/man/methods-summary.Rd |only timeDate-290.85/timeDate/man/midnightStandard.Rd |only timeDate-290.85/timeDate/man/myFinCenter.Rd |only timeDate-290.85/timeDate/man/myUnits.Rd |only timeDate-290.85/timeDate/man/nDay.Rd |only timeDate-290.85/timeDate/man/onOrAfter.Rd |only timeDate-290.85/timeDate/man/periods.Rd |only timeDate-290.85/timeDate/man/rep.Rd |only timeDate-290.85/timeDate/man/rev.Rd |only timeDate-290.85/timeDate/man/round.Rd |only timeDate-290.85/timeDate/man/rulesFinCenter.Rd |only timeDate-290.85/timeDate/man/sample.Rd |only timeDate-290.85/timeDate/man/skewness.Rd |only timeDate-290.85/timeDate/man/sort.Rd |only timeDate-290.85/timeDate/man/start.Rd |only timeDate-290.85/timeDate/man/subset.Rd |only timeDate-290.85/timeDate/man/timeCalendar.Rd |only timeDate-290.85/timeDate/man/timeSequence.Rd |only timeDate-290.85/timeDate/man/unique.Rd |only timeDate-290.85/timeDate/man/whichFormat.Rd |only timeDate-290.85/timeDate/man/window.Rd |only 231 files changed, 590 insertions(+), 273 deletions(-)
Author: Jiahui Wang, Ruben Zamar
Diff between robust versions 0.3-4 dated 2008-09-10 and 0.3-9 dated 2009-09-28
Title: Insightful Robust Library
Description: A package of robust methods.
robust-0.3-4/robust/R/donostah.q |only
robust-0.3-4/robust/R/fastcov.q |only
robust-0.3-4/robust/datasets/lawson.dat.txt |only
robust-0.3-4/robust/datasets/wagner.dat.txt |only
robust-0.3-4/robust/man/cov.Rd |only
robust-0.3-4/robust/man/donostah.Rd |only
robust-0.3-4/robust/man/fastcov.Rd |only
robust-0.3-4/robust/meta |only
robust-0.3-4/robust/src/ds11.f |only
robust-0.3-4/robust/src/fastcov.c |only
robust-0.3-9/robust/DESCRIPTION | 28
robust-0.3-9/robust/R/cov.q | 104 -
robust-0.3-9/robust/R/covRob.control.q | 5
robust-0.3-9/robust/R/covRob.q | 30
robust-0.3-9/robust/R/get.fit.models.database.q | 59
robust-0.3-9/robust/R/glmRob.cubif.control.q | 8
robust-0.3-9/robust/R/glmRob.q | 69
robust-0.3-9/robust/R/lmRob.eff0.q | 31
robust-0.3-9/robust/R/lmRob.effvy.q | 59
robust-0.3-9/robust/R/lmRob.fit.compute.q | 1423 +++++++++----------
robust-0.3-9/robust/R/lmRob.fit.q | 24
robust-0.3-9/robust/R/lmRob.lar.q | 13
robust-0.3-9/robust/R/lmRob.q | 62
robust-0.3-9/robust/R/lmRob.ucovcoef.q | 8
robust-0.3-9/robust/R/lmRob.wfit.q | 46
robust-0.3-9/robust/R/plot.glmfm.q | 393 ++---
robust-0.3-9/robust/R/print.summary.glmfm.q | 68
robust-0.3-9/robust/R/update.lmRob.q | 23
robust-0.3-9/robust/R/weight.funs.q | 88 -
robust-0.3-9/robust/datasets/README |only
robust-0.3-9/robust/inst/datasets |only
robust-0.3-9/robust/inst/tests_S |only
robust-0.3-9/robust/man/ccov.Rd |only
robust-0.3-9/robust/man/covRob.Rd | 14
robust-0.3-9/robust/man/covRob.control.Rd | 2
robust-0.3-9/robust/man/covfmDistance2Plot.Rd | 13
robust-0.3-9/robust/man/covfmEllipsesPlot.Rd | 8
robust-0.3-9/robust/man/covfmScreePlot.Rd | 8
robust-0.3-9/robust/man/covfmSqrtMDPlot.Rd | 20
robust-0.3-9/robust/man/fit.models.Rd | 10
robust-0.3-9/robust/man/glmRob.Rd | 10
robust-0.3-9/robust/man/glmRob.cubif.Rd | 27
robust-0.3-9/robust/man/glmRob.cubif.null.Rd | 12
robust-0.3-9/robust/man/key.Rd | 4
robust-0.3-9/robust/man/lmRob.Rd | 58
robust-0.3-9/robust/man/plot.covfm.Rd | 18
robust-0.3-9/robust/man/plot.glmRob.Rd | 2
robust-0.3-9/robust/man/plot.glmfm.Rd | 46
robust-0.3-9/robust/man/plot.lmRob.Rd | 2
robust-0.3-9/robust/man/plot.lmfm.Rd | 2
robust-0.3-9/robust/man/print.covfm.Rd | 10
robust-0.3-9/robust/man/print.summary.covfm.Rd | 24
robust-0.3-9/robust/man/step.lmRob.Rd | 15
robust-0.3-9/robust/man/summary.covfm.Rd | 7
robust-0.3-9/robust/man/update.lmRob.Rd | 18
robust-0.3-9/robust/man/weight.funs.Rd | 51
robust-0.3-9/robust/man/woodmod.dat.Rd | 10
robust-0.3-9/robust/man/wt.carroll.Rd | 5
robust-0.3-9/robust/robust.xcodeproj/project.pbxproj | 83 -
robust-0.3-9/robust/src/lmrobbi.f | 453 +++---
robust-0.3-9/robust/src/lmrobml.f | 32
robust-0.3-9/robust/src/lmrobmm.f | 403 ++---
robust-0.3-9/robust/src/rb.c | 20
robust-0.3-9/robust/tests |only
64 files changed, 2091 insertions(+), 1837 deletions(-)
Author: lp_solve
Diff between lpSolveAPI versions 5.5.0.14 dated 2009-02-12 and 5.5.0.15 dated 2009-09-28
Title: Interface to lp_solve 5.5.0.15
Description: The lpSolveAPI package provides an R interface to the
lp_solve library API - lp_solve is a Mixed Integer Linear
Programming (MILP) solver with support for pure linear, (mixed)
integer/binary, semi-continuous and special ordered sets (SOS)
models.
DESCRIPTION | 26 +-
inst/doc/lpSolveAPI.pdf | 10
inst/include/commonlib.h | 4
inst/include/lp_bit.h |only
inst/include/lp_lib.h | 35 +--
inst/include/lp_utils.h | 18 -
inst/include/myblas.h | 34 +--
lpSolveAPI.xcodeproj/project.pbxproj | 2
src/lp_MPS.c | 132 ++++++------
src/lp_crash.c | 136 ++++++++++++
src/lp_lib.c | 235 ++++++++++++++-------
src/lp_matrix.c | 384 ++++++++++++++++++++++++++++-------
src/lp_mipbb.c | 32 +-
src/lp_params.c | 14 -
src/lp_presolve.c | 28 +-
src/lp_price.c | 4
src/lp_report.c | 5
src/lp_scale.c | 12 -
src/lp_simplex.c | 4
src/lp_utils.c | 15 -
src/lp_wlp.c | 134 +++++-------
src/mmio.c | 107 ++++-----
src/myblas.c | 174 ++++++++-------
src/yacc_read.c | 223 ++++++++++----------
24 files changed, 1106 insertions(+), 662 deletions(-)
Author: Jorge Luis Ojeda Cabrera,
Diff between locpol versions 0.2-0 dated 2007-12-18 and 0.4-0 dated 2009-09-28
Title: Kernel local polynomial regression
Description: Computes local polynomial estimators.
DESCRIPTION | 12 +
INDEX |only
R/locpol.R | 296 ++++++++++++++++++++++++++++++++++++-------------
README | 37 ++++--
man/KernelChars.Rd | 13 --
man/PRDenEstC.Rd | 2
man/bivLocPol.Rd |only
man/compKernVals.Rd | 4
man/denCVBwSelC.Rd | 3
man/equivKernel.Rd | 4
man/locPolWeights.Rd | 9 -
man/locpol.Rd | 43 +++----
man/locpolSmoothers.Rd | 34 +++--
man/pluginBw.Rd | 2
man/regCVBwSelC.Rd | 2
man/simpleSmoothers.Rd | 2
16 files changed, 317 insertions(+), 146 deletions(-)
Author: Rmetrics Core Team, Diethelm Wuertz
Title: Rmetrics - Portfolio Selection and Optimization
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Diff between fPortfolio versions 2100.77 dated 2009-04-20 and 2100.78 dated 2009-09-28
fPortfolio-2100.77/fPortfolio/R/solveRsymphony.R |only fPortfolio-2100.77/fPortfolio/man/solveRsymphony.Rd |only fPortfolio-2100.78/fPortfolio/CITATION |only fPortfolio-2100.78/fPortfolio/ChangeLog | 257 +------ fPortfolio-2100.78/fPortfolio/DESCRIPTION | 19 fPortfolio-2100.78/fPortfolio/NAMESPACE | 89 -- fPortfolio-2100.78/fPortfolio/R/covEstimator.R | 329 +++++++++- fPortfolio-2100.78/fPortfolio/R/efficientPortfolio.R | 2 fPortfolio-2100.78/fPortfolio/R/frontierPlot.R | 130 ++- fPortfolio-2100.78/fPortfolio/R/solveRglpk.R | 57 - fPortfolio-2100.78/fPortfolio/R/solveRquadprog.R | 5 fPortfolio-2100.78/fPortfolio/R/solveRshortExact.R | 1 fPortfolio-2100.78/fPortfolio/R/zzz.R | 8 fPortfolio-2100.78/fPortfolio/inst/PortfolioOptimizationSample.pdf |only fPortfolio-2100.78/fPortfolio/man/frontierPlot.Rd | 6 fPortfolio-2100.78/fPortfolio/man/getPortfolio.Rd | 13 fPortfolio-2100.78/fPortfolio/man/getSpec.Rd | 3 fPortfolio-2100.78/fPortfolio/man/getVal.Rd |only 18 files changed, 544 insertions(+), 375 deletions(-)
Author: Diethelm Wuertz and Yohan Chalabi with contribution from Michal
Miklovic, Chris Boudt, Pierre Chausse and others
Title: Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Diff between fGarch versions 2100.78 dated 2009-04-20 and 2100.79 dated 2009-09-28
fGarch-2100.78/fGarch/R/garchFit.R |only fGarch-2100.78/fGarch/R/garchFitControl.R |only fGarch-2100.78/fGarch/R/garchGradient.R |only fGarch-2100.78/fGarch/R/garchHessian.R |only fGarch-2100.78/fGarch/R/garchSim.R |only fGarch-2100.78/fGarch/R/garchSolver.R |only fGarch-2100.78/fGarch/R/garchSpec.R |only fGarch-2100.78/fGarch/R/garchStats.R |only fGarch-2100.78/fGarch/R/sged.R |only fGarch-2100.78/fGarch/R/snorm.R |only fGarch-2100.78/fGarch/R/sstd.R |only fGarch-2100.79/fGarch/ChangeLog | 95 ++++- fGarch-2100.79/fGarch/DESCRIPTION | 17 - fGarch-2100.79/fGarch/NAMESPACE | 101 +----- fGarch-2100.79/fGarch/R/dist-sged.R |only fGarch-2100.79/fGarch/R/dist-snig.R |only fGarch-2100.79/fGarch/R/dist-snorm.R |only fGarch-2100.79/fGarch/R/dist-sstd.R |only fGarch-2100.79/fGarch/R/fGarchEnv.R | 17 - fGarch-2100.79/fGarch/R/garch-Distribution.R |only fGarch-2100.79/fGarch/R/garch-FitFromFormula.R |only fGarch-2100.79/fGarch/R/garch-FitFromSpec.R |only fGarch-2100.79/fGarch/R/garch-FitInternal.R |only fGarch-2100.79/fGarch/R/garch-GlobalVars.R |only fGarch-2100.79/fGarch/R/garch-Gradient.R |only fGarch-2100.79/fGarch/R/garch-Hessian.R |only fGarch-2100.79/fGarch/R/garch-Initialization.R |only fGarch-2100.79/fGarch/R/garch-Sim.R |only fGarch-2100.79/fGarch/R/garch-Solver.R |only fGarch-2100.79/fGarch/R/garch-SolverControl.R |only fGarch-2100.79/fGarch/R/garch-Spec.R |only fGarch-2100.79/fGarch/R/garch-Stats.R |only fGarch-2100.79/fGarch/R/loglik-aparch.R |only fGarch-2100.79/fGarch/R/loglik-egarch.R |only fGarch-2100.79/fGarch/R/loglik.R |only fGarch-2100.79/fGarch/R/methods-plot.R | 84 ++--- fGarch-2100.79/fGarch/R/methods-predict.R | 183 +++++++++-- fGarch-2100.79/fGarch/R/methods-show.R | 81 +++- fGarch-2100.79/fGarch/R/methods-summary.R | 4 fGarch-2100.79/fGarch/R/mgarch-FitFromFormula.R |only fGarch-2100.79/fGarch/inst/unitTests/runit.formula-methods.R | 2 fGarch-2100.79/fGarch/man/class-fGARCH.Rd | 2 fGarch-2100.79/fGarch/man/garchFit.Rd | 18 - fGarch-2100.79/fGarch/man/garchSim.Rd | 2 fGarch-2100.79/fGarch/man/methods-predict.Rd | 79 +++- 45 files changed, 454 insertions(+), 231 deletions(-)
Author: Diethelm Wuertz and many others, see the SOURCE file
Title: Rmetrics - Dependence Structures with Copulas
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Diff between fCopulae versions 2100.76 dated 2009-04-20 and 2100.77 dated 2009-09-28
ChangeLog | 27 +++------------------------ DESCRIPTION | 12 ++++++------ NAMESPACE | 5 +++++ R/mv-distributions.R | 2 +- 4 files changed, 15 insertions(+), 31 deletions(-)
Author: Diethelm Wuertz and many others, see the SOURCE file
Title: Rmetrics - Markets and Basic Statistics
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Diff between fBasics versions 2100.77 dated 2009-04-20 and 2100.78 dated 2009-09-28
fBasics-2100.77/fBasics/R/Heaviside.R |only fBasics-2100.77/fBasics/R/HeavisideSlider.R |only fBasics-2100.77/fBasics/R/NormalityTests.R |only fBasics-2100.77/fBasics/R/Sys.putenv.R |only fBasics-2100.77/fBasics/R/acfPlot.R |only fBasics-2100.77/fBasics/R/akimaInterp.R |only fBasics-2100.77/fBasics/R/as.matrix.ts.R |only fBasics-2100.77/fBasics/R/baseMethods.R |only fBasics-2100.77/fBasics/R/basicStats.R |only fBasics-2100.77/fBasics/R/boxPlot.R |only fBasics-2100.77/fBasics/R/characterTable.R |only fBasics-2100.77/fBasics/R/colIds.R |only fBasics-2100.77/fBasics/R/colVec.R |only fBasics-2100.77/fBasics/R/colorLocator.R |only fBasics-2100.77/fBasics/R/colorPalette.R |only fBasics-2100.77/fBasics/R/colorTable.R |only fBasics-2100.77/fBasics/R/correlationTest.R |only fBasics-2100.77/fBasics/R/decor.R |only fBasics-2100.77/fBasics/R/dist-ghSlider.R |only fBasics-2100.77/fBasics/R/dist-hypSlider.R |only fBasics-2100.77/fBasics/R/dist-nigShapeTriangle.R |only fBasics-2100.77/fBasics/R/dist-nigSlider.R |only fBasics-2100.77/fBasics/R/dist-stableSlider.R |only fBasics-2100.77/fBasics/R/distCheck.R |only fBasics-2100.77/fBasics/R/fDISTFIT.R |only fBasics-2100.77/fBasics/R/fHTEST.R |only fBasics-2100.77/fBasics/R/getS4.R |only fBasics-2100.77/fBasics/R/gridVector.R |only fBasics-2100.77/fBasics/R/hilbert.R |only fBasics-2100.77/fBasics/R/histPlot.R |only fBasics-2100.77/fBasics/R/interactivePlot.R |only fBasics-2100.77/fBasics/R/inv.R |only fBasics-2100.77/fBasics/R/jbALM.R |only fBasics-2100.77/fBasics/R/jbLM.R |only fBasics-2100.77/fBasics/R/jbTable.R |only fBasics-2100.77/fBasics/R/krigeInterp.R |only fBasics-2100.77/fBasics/R/kron.R |only fBasics-2100.77/fBasics/R/ks2Test.R |only fBasics-2100.77/fBasics/R/lcg.R |only fBasics-2100.77/fBasics/R/linearInterp.R |only fBasics-2100.77/fBasics/R/listDescription.R |only fBasics-2100.77/fBasics/R/listFunctions.R |only fBasics-2100.77/fBasics/R/listIndex.R |only fBasics-2100.77/fBasics/R/locationTest.R |only fBasics-2100.77/fBasics/R/matrixNorm.R |only fBasics-2100.77/fBasics/R/maxdd.R |only fBasics-2100.77/fBasics/R/normalTest.R |only fBasics-2100.77/fBasics/R/pascal.R |only fBasics-2100.77/fBasics/R/pdl.R |only fBasics-2100.77/fBasics/R/positiveDefinite.R |only fBasics-2100.77/fBasics/R/qqPlot.R |only fBasics-2100.77/fBasics/R/returnSeriesGUI.R |only fBasics-2100.77/fBasics/R/rgb.R |only fBasics-2100.77/fBasics/R/rk.R |only fBasics-2100.77/fBasics/R/rowStats.R |only fBasics-2100.77/fBasics/R/scaleTest.R |only fBasics-2100.77/fBasics/R/scalinglawPlot.R |only fBasics-2100.77/fBasics/R/seriesPlot.R |only fBasics-2100.77/fBasics/R/sliderMenu.R |only fBasics-2100.77/fBasics/R/stylizedFactsGUI.R |only fBasics-2100.77/fBasics/R/subPlot.R |only fBasics-2100.77/fBasics/R/subStars.R |only fBasics-2100.77/fBasics/R/symbolTable.R |only fBasics-2100.77/fBasics/R/tr.R |only fBasics-2100.77/fBasics/R/triang.R |only fBasics-2100.77/fBasics/R/tslag.R |only fBasics-2100.77/fBasics/R/unitTest.R |only fBasics-2100.77/fBasics/R/unitrootNA.R |only fBasics-2100.77/fBasics/R/varianceTest.R |only fBasics-2100.77/fBasics/R/vec.R |only fBasics-2100.78/fBasics/ChangeLog | 65 +- fBasics-2100.78/fBasics/DESCRIPTION | 12 fBasics-2100.78/fBasics/NAMESPACE | 157 +----- fBasics-2100.78/fBasics/R/builtin-gelGMM.R |only fBasics-2100.78/fBasics/R/builtin-gmmGMM.R |only fBasics-2100.78/fBasics/R/builtin-sandwichGMM.R |only fBasics-2100.78/fBasics/R/color-Locator.R |only fBasics-2100.78/fBasics/R/color-Palettes.R |only fBasics-2100.78/fBasics/R/color-RGB.R |only fBasics-2100.78/fBasics/R/color-Table.R |only fBasics-2100.78/fBasics/R/dist-distCheck.R |only fBasics-2100.78/fBasics/R/dist-fDISTFIT.R |only fBasics-2100.78/fBasics/R/dist-ghMoments.R |only fBasics-2100.78/fBasics/R/dist-ghtMode.R |only fBasics-2100.78/fBasics/R/dist-nig.R | 156 +++--- fBasics-2100.78/fBasics/R/dist-nigFit.R | 243 +++++++++- fBasics-2100.78/fBasics/R/dist-nigMode.R |only fBasics-2100.78/fBasics/R/dist-nigStats.R |only fBasics-2100.78/fBasics/R/dist-sgh.R | 20 fBasics-2100.78/fBasics/R/dist-snig.R | 48 + fBasics-2100.78/fBasics/R/dist-stable.R | 88 --- fBasics-2100.78/fBasics/R/dist-stableFit.R | 99 ++-- fBasics-2100.78/fBasics/R/dist-stableMode.R |only fBasics-2100.78/fBasics/R/gui-HeavisideSlider.R |only fBasics-2100.78/fBasics/R/gui-ghSlider.R |only fBasics-2100.78/fBasics/R/gui-hypSlider.R |only fBasics-2100.78/fBasics/R/gui-nigSlider.R |only fBasics-2100.78/fBasics/R/gui-returnSeries.R |only fBasics-2100.78/fBasics/R/gui-sliderMenu.R |only fBasics-2100.78/fBasics/R/gui-stableSlider.R |only fBasics-2100.78/fBasics/R/gui-stylizedFacts.R |only fBasics-2100.78/fBasics/R/interp-akimaInterp.R |only fBasics-2100.78/fBasics/R/interp-krigeInterp.R |only fBasics-2100.78/fBasics/R/interp-linearInterp.R |only fBasics-2100.78/fBasics/R/lines-recessionLines.R |only fBasics-2100.78/fBasics/R/list-listDescription.R |only fBasics-2100.78/fBasics/R/list-listFunctions.R |only fBasics-2100.78/fBasics/R/list-listIndex.R |only fBasics-2100.78/fBasics/R/matrix-colVec.R |only fBasics-2100.78/fBasics/R/matrix-gridVector.R |only fBasics-2100.78/fBasics/R/matrix-hilbert.R |only fBasics-2100.78/fBasics/R/matrix-inv.R |only fBasics-2100.78/fBasics/R/matrix-kron.R |only fBasics-2100.78/fBasics/R/matrix-norm.R |only fBasics-2100.78/fBasics/R/matrix-pascal.R |only fBasics-2100.78/fBasics/R/matrix-pdl.R |only fBasics-2100.78/fBasics/R/matrix-posDefinite.R |only fBasics-2100.78/fBasics/R/matrix-rk.R |only fBasics-2100.78/fBasics/R/matrix-tr.R |only fBasics-2100.78/fBasics/R/matrix-triang.R |only fBasics-2100.78/fBasics/R/matrix-tslag.R |only fBasics-2100.78/fBasics/R/matrix-vech.R |only fBasics-2100.78/fBasics/R/plot-acfPlot.R |only fBasics-2100.78/fBasics/R/plot-boxPlot.R |only fBasics-2100.78/fBasics/R/plot-counts.R |only fBasics-2100.78/fBasics/R/plot-histPlot.R |only fBasics-2100.78/fBasics/R/plot-interactivePlot.R |only fBasics-2100.78/fBasics/R/plot-qqPlot.R |only fBasics-2100.78/fBasics/R/plot-scalinglawPlot.R |only fBasics-2100.78/fBasics/R/plot-seriesPlot.R |only fBasics-2100.78/fBasics/R/plot-subPlot.R |only fBasics-2100.78/fBasics/R/plot-subStars.R |only fBasics-2100.78/fBasics/R/plot-varpie.R |only fBasics-2100.78/fBasics/R/rand-lcg.R |only fBasics-2100.78/fBasics/R/stats-basicStats.R |only fBasics-2100.78/fBasics/R/stats-maxdd.R |only fBasics-2100.78/fBasics/R/stats-rowStats.R |only fBasics-2100.78/fBasics/R/test-NormalityTests.R |only fBasics-2100.78/fBasics/R/test-correlationTest.R |only fBasics-2100.78/fBasics/R/test-fHTEST.R |only fBasics-2100.78/fBasics/R/test-jbALM.R |only fBasics-2100.78/fBasics/R/test-jbLM.R |only fBasics-2100.78/fBasics/R/test-jbTable.R |only fBasics-2100.78/fBasics/R/test-ks2Test.R |only fBasics-2100.78/fBasics/R/test-locationTest.R |only fBasics-2100.78/fBasics/R/test-normalTest.R |only fBasics-2100.78/fBasics/R/test-scaleTest.R |only fBasics-2100.78/fBasics/R/test-varianceTest.R |only fBasics-2100.78/fBasics/R/utils-Heaviside.R |only fBasics-2100.78/fBasics/R/utils-Sys.putenv.R |only fBasics-2100.78/fBasics/R/utils-as.matrix.ts.R |only fBasics-2100.78/fBasics/R/utils-baseMethods.R |only fBasics-2100.78/fBasics/R/utils-characterTable.R |only fBasics-2100.78/fBasics/R/utils-colIds.R |only fBasics-2100.78/fBasics/R/utils-decor.R |only fBasics-2100.78/fBasics/R/utils-getS4.R |only fBasics-2100.78/fBasics/R/utils-symbolTable.R |only fBasics-2100.78/fBasics/R/utils-unitTest.R |only fBasics-2100.78/fBasics/R/utils-unitrootNA.R |only fBasics-2100.78/fBasics/inst/unitTests/runit.NormalityTests.R | 86 +-- fBasics-2100.78/fBasics/inst/unitTests/runit.ReturnSeriesBasics.R | 13 fBasics-2100.78/fBasics/inst/unitTests/runit.StylizedFacts.R | 16 fBasics-2100.78/fBasics/man/00fBasics-package.Rd | 21 fBasics-2100.78/fBasics/man/correlationTest.Rd | 2 fBasics-2100.78/fBasics/man/dist-DistributionFits.Rd | 28 - fBasics-2100.78/fBasics/man/dist-nigFit.Rd | 10 fBasics-2100.78/fBasics/src/nig.c | 22 167 files changed, 642 insertions(+), 444 deletions(-)
Author: Diethelm Wuertz and many others, see the SOURCE file
Title: Rmetrics - Assets Selection and Modelling
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Diff between fAssets versions 2100.77 dated 2009-04-20 and 2100.78 dated 2009-09-28
fAssets-2100.77/fAssets/R/builtin-mst.R |only fAssets-2100.77/fAssets/R/builtin-robust.R |only fAssets-2100.78/fAssets/ChangeLog | 140 ++--- fAssets-2100.78/fAssets/DESCRIPTION | 12 fAssets-2100.78/fAssets/NAMESPACE | 147 +---- fAssets-2100.78/fAssets/R/assetsFit.R | 20 fAssets-2100.78/fAssets/R/assetsMeanCov.R | 524 +++++++++++++++++---- fAssets-2100.78/fAssets/R/assetsTest.R | 88 +-- fAssets-2100.78/fAssets/R/builtin-DEoptim.R |only fAssets-2100.78/fAssets/R/builtin-arwMvoutlier.R |only fAssets-2100.78/fAssets/R/builtin-corpcor.R | 39 + fAssets-2100.78/fAssets/R/builtin-corrgram.R | 29 - fAssets-2100.78/fAssets/R/builtin-covRobust.R | 77 +-- fAssets-2100.78/fAssets/R/builtin-donostahRobust.R |only fAssets-2100.78/fAssets/R/builtin-energy.R | 34 + fAssets-2100.78/fAssets/R/builtin-mstApe.R |only fAssets-2100.78/fAssets/R/builtin-rmtTawny.R |only fAssets-2100.78/fAssets/R/builtin-shrinkTawny.R |only fAssets-2100.78/fAssets/man/assetsMeanCov.Rd | 2 19 files changed, 704 insertions(+), 408 deletions(-)
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.9.2.2 dated 2009-09-23 and 2.9.2.3 dated 2009-09-28
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 8 +-
R/epicalc.R | 234 ++++++++++++++++++++++++++++++++++--------------------------
2 files changed, 140 insertions(+), 102 deletions(-)
Author: Thoralf Mildenberger, Henrike Weinert, Sebastian Tiemeyer
Title: 28 benchmark densities from Berlinet/Devroye (1994)
Description: Full implementation of the 28 distributions introduced as
benchmarks for nonparametric density estimation by Berlinet and
Devroye (1994). Includes densities, cdfs, quantile functions
and generators for samples as well as additional information on
features of the densities. Also contains the 4 histogram
densities used in Rozenholc/Mildenberger/Gather (2009).
Diff between benchden versions 1.0.1 dated 2008-01-23 and 1.0.2 dated 2009-09-28
benchden-1.0.1/benchden/R/berdev.r |only benchden-1.0.2/benchden/DESCRIPTION | 27 +++++++++++++++++---------- benchden-1.0.2/benchden/NAMESPACE | 3 ++- benchden-1.0.2/benchden/R/berdev.R |only benchden-1.0.2/benchden/R/histo.R |only benchden-1.0.2/benchden/R/qberdev.R | 11 ++++------- benchden-1.0.2/benchden/man/bberdev.Rd | 2 +- benchden-1.0.2/benchden/man/bhisto.Rd |only benchden-1.0.2/benchden/man/dberdev.Rd | 2 +- benchden-1.0.2/benchden/man/dhisto.Rd |only benchden-1.0.2/benchden/man/histo.Rd |only 11 files changed, 25 insertions(+), 20 deletions(-)
Author: Jonathan M. Lees
Title: Read in WIN format data
Description: Reads in WIN pickfile and waveform file, prepares data for
RSEIS
Diff between WINRPACK versions 1.0-8 dated 2009-01-26 and 1.0-9 dated 2009-09-28
DESCRIPTION | 10 +++++++--- inst/doc/WIN2R.pdf |binary man/WINRPACK-package.Rd | 2 +- src/Makevars.win |only 4 files changed, 8 insertions(+), 4 deletions(-)
Author: Ulrike Groemping
Title: R Commander Plugin for (industrial) Design of Experiments
Description: WARNING: This package is currently in beta status! The
package provides a platform-independent GUI for design of
experiments. It is implemented as a plugin to the R-Commander,
which is a more general graphical user interface for statistics
in R based on tcl/tk. DoE functionality can be accessed through
the menu Design that is added to the R-Commander menus.
Diff between RcmdrPlugin.DoE versions 0.5-2 dated 2009-09-25 and 0.5-3 dated 2009-09-28
DESCRIPTION | 10 +++++----- R/Menu.oa.R | 37 +++++++++++++++++++------------------ R/menu.defaults.R | 2 +- inst/NEWS | 6 ++++++ 4 files changed, 31 insertions(+), 24 deletions(-)
More information about RcmdrPlugin.DoE at CRAN
Permanent link
Author: Kaspar Rufibach
Title: Least squares, logistic, and Cox-regression with ordered
predictors
Description: In biomedical studies, researchers are often interested in
assessing the association between one or more ordinal
explanatory variables and an outcome variable, at the same time
adjusting for covariates of any type. The outcome variable may
be continuous, binary, or represent censored survival times. In
the absence of a precise knowledge of the response function,
using monotonicity constraints on the ordinal variables
improves efficiency in estimating parameters, especially when
sample sizes are small. This package implements an active set
algorithm that efficiently computes such estimators.
Diff between OrdFacReg versions 1.0.0 dated 2009-04-16 and 1.0.1 dated 2009-09-28
CHANGES | 7 ++++++- DESCRIPTION | 8 ++++---- R/Abeta.R | 2 +- R/LSEsubspace.R | 2 +- R/constraintMats.R | 2 +- R/coxDeriv.R | 2 +- R/coxLoglik.R | 2 +- R/coxSubspace.R | 2 +- R/dummy.R | 2 +- R/expandBeta.R | 2 +- R/indexDummy.R | 2 +- R/lmLSE.R | 2 +- R/lmSS.R | 2 +- R/logRegDeriv.R | 2 +- R/logRegLoglik.R | 2 +- R/logRegSubspace.R | 2 +- R/maxStep.R | 2 +- R/ordFacReg.R | 16 ++++++++++++---- R/ordFacRegCox.R | 16 ++++++++++++---- R/phi_jl.R | 2 +- R/prepareData.R | 12 ++++++++++-- R/setminus.R | 2 +- R/shrinkBeta.R | 2 +- man/internal.Rd | 2 +- man/ordFacReg-package.Rd | 6 +++--- man/ordFacReg.Rd | 37 +++++++++++++++++++++++++++++-------- man/ordFacRegCox.Rd | 13 ++++++++----- man/prepareData.Rd | 7 +++++-- 28 files changed, 108 insertions(+), 52 deletions(-)
Author: Jouni Lehtonen
Diff between KFAS versions 0.4.2 dated 2009-09-28 and 0.4.3 dated 2009-09-28
Title: Multivariate Kalman filter and smoother, simulation smoother and
forecasting
Description: Package KFAS provides functions for fast Kalman filtering,
state and disturbance smoothing, forecasting and simulation of
multivariate time-variant state space models. All functions can
use exact diffuse initialisation when distributions of some or
all elements of initial state vector are unknown. Filtering,
state smoothing and simulation functions use sequential
processing algorithm, which is faster than standard approach,
and it also allows singularity of prediction error variance
matrix.
DESCRIPTION | 17 +++++++-------
R/KFAS.R | 62 +++++++++-------------------------------------------
man/distsmoother.Rd | 9 ++++---
man/ks.Rd | 15 ++++--------
man/simsmoother.Rd | 2 -
5 files changed, 31 insertions(+), 74 deletions(-)
Author: Bernhard Pfaff
Diff between urca versions 1.2-2 dated 2009-01-11 and 1.2-3 dated 2009-09-28
Title: Unit root and cointegration tests for time series data
Description: Unit root and cointegration tests encountered in applied
econometric analysis are implemented.
urca-1.2-2/urca/inst/McKinnonLicense.txt |only
urca-1.2-3/urca/DESCRIPTION | 31 +++++++++++++++-------------
urca-1.2-3/urca/R/methods-show.R | 2 -
urca-1.2-3/urca/R/ur-za.R | 2 -
urca-1.2-3/urca/inst/ChangeLog | 33 ++++++++++++++++++++----------
urca-1.2-3/urca/inst/MacKinnonLicense.txt |only
urca-1.2-3/urca/inst/book-ex/Rcode-1-3.R | 3 +-
urca-1.2-3/urca/inst/book-ex/ex2.tar.gz |binary
urca-1.2-3/urca/man/alphaols.Rd | 2 -
urca-1.2-3/urca/man/cajools.Rd | 2 -
urca-1.2-3/urca/man/cajorls.Rd | 2 -
11 files changed, 47 insertions(+), 30 deletions(-)
Author: Tuomas Rajala
Title: Segregation measures for multitype spatial point patterns
Description: Summaries for measuring segregation/mingling in multitype
spatial point patterns with graph based neighbourhood
description. Included indices: Mingling, Shannon, Simpson (also
the non-spatial) Included functionals: Mingling, Shannon,
Simpson, ISAR. Included neighbourhoods: Geometric, k-nearest
neighbours, Gabriel, Delauney.
Diff between spatialsegregation versions 2.10 dated 2009-09-18 and 2.11 dated 2009-09-28
DESCRIPTION | 8 ++++---- R/fun.R | 32 +++++++++++++++++++++++--------- R/isar.R | 1 - change.log | 4 ++++ src/Fun.cpp | 1 - src/Graph.cpp | 12 +++++++++++- src/Graph.h | 2 ++ src/Pp.cpp | 22 +++++++++++----------- src/Pp.h | 1 + src/isar.cpp | 4 ++-- src/mingling.cpp | 2 +- src/rfun.cpp | 8 +++++--- src/shannon.cpp | 2 +- 13 files changed, 65 insertions(+), 34 deletions(-)
More information about spatialsegregation at CRAN
Permanent link
Author: Kenneth Knoblauch
Title: Functions for analyzing psychophysical data in R
Description: An assortment of functions that could be useful in
analyzing data from pyschophysical experiments. It includes
functions for calculating d' from several different
experimental designs, links for m-alternative forced-choice
(mafc) data to be used with the binomial family in glm (and
possibly other contexts) and self-Start functions for
estimating gamma values for CRT screen calibrations.
Diff between psyphy versions 0.1-2 dated 2009-08-21 and 0.1-3 dated 2009-09-28
DESCRIPTION | 8 ++++---- R/dprime.SD.R | 1 + 2 files changed, 5 insertions(+), 4 deletions(-)
Author: Christine Porzelius, Harald Binder
Title: Parallelised Estimation of Prediction Error
Description: Package peperr is designed for prediction error estimation
through resampling techniques, possibly accelerated by parallel
execution on a compute cluster. Newly developed model fitting
routines can be easily incorporated.
Diff between peperr versions 1.1-3 dated 2009-04-23 and 1.1-4 dated 2009-09-28
DESCRIPTION | 10 ++++----- NAMESPACE | 6 ++--- R/complexity.ipec.rsf_mtry.R |only R/fit.rsf_mtry.R |only R/peperr.R | 42 ++++++++++++++++++++++++++++++++------- R/predictProb.rsf.R |only changeLog | 24 +++++++++++++--------- changeLog.backup |only man/complexity.LASSO.Rd | 2 - man/complexity.ipec.CoxBoost.Rd | 2 - man/complexity.ipec.rsf_mtry.Rd |only man/complexity.mincv.CoxBoost.Rd | 2 - man/fit.CoxBoost.Rd | 2 - man/fit.LASSO.Rd | 2 - man/fit.coxph.Rd | 2 - man/fit.rsf_mtry.Rd |only man/peperr.Rd | 10 ++++++--- man/predictProb.rsf.Rd |only 18 files changed, 70 insertions(+), 34 deletions(-)
Author: Ben B. Hansen
Diff between optmatch versions 0.5-0 dated 2009-05-19 and 0.6-0 dated 2009-09-28
Title: Functions for optimal matching
Description: Functions for optimal matching, including full matching
optmatch-0.5-0/optmatch/inst/doc |only
optmatch-0.6-0/optmatch/DESCRIPTION | 16
optmatch-0.6-0/optmatch/NAMESPACE | 7
optmatch-0.6-0/optmatch/NEWS |only
optmatch-0.6-0/optmatch/R/caliper.R |only
optmatch-0.6-0/optmatch/R/fullmatch.R | 28 -
optmatch-0.6-0/optmatch/R/fullmatchNumControlsHandling.R |only
optmatch-0.6-0/optmatch/R/matched.distances.R | 3
optmatch-0.6-0/optmatch/R/max.controls.cap.R | 15
optmatch-0.6-0/optmatch/R/mdist.R |only
optmatch-0.6-0/optmatch/R/moremethods.optmatch.R | 10
optmatch-0.6-0/optmatch/R/stratumStructure.R | 2
optmatch-0.6-0/optmatch/R/summary.optmatch.R | 36 +-
optmatch-0.6-0/optmatch/ToDo | 21 -
optmatch-0.6-0/optmatch/demo/optmatch.r | 81 +++-
optmatch-0.6-0/optmatch/man/caliper.Rd |only
optmatch-0.6-0/optmatch/man/fullmatch.Rd | 74 ++--
optmatch-0.6-0/optmatch/man/mahal.dist.Rd | 11
optmatch-0.6-0/optmatch/man/mdist.Rd |only
optmatch-0.6-0/optmatch/man/min.controls.cap.Rd | 7
optmatch-0.6-0/optmatch/man/nuclearplants.Rd | 2
optmatch-0.6-0/optmatch/man/pairmatch.Rd | 42 +-
optmatch-0.6-0/optmatch/man/pscore.dist.Rd | 5
optmatch-0.6-0/optmatch/man/relaxinfo.Rd | 4
optmatch-0.6-0/optmatch/tests/caliper.R |only
optmatch-0.6-0/optmatch/tests/fullmatch-helpers.R |only
optmatch-0.6-0/optmatch/tests/fullmatch-helpers.Rout.save |only
optmatch-0.6-0/optmatch/tests/maxcontrolscap-tests.R |only
optmatch-0.6-0/optmatch/tests/maxcontrolscap-tests.Rout.save |only
optmatch-0.6-0/optmatch/tests/mdist.R |only
optmatch-0.6-0/optmatch/tests/moremethods.optmatch-tests.Rout.save | 174 +++++++++-
optmatch-0.6-0/optmatch/tests/stratumStructure-tests.R | 6
optmatch-0.6-0/optmatch/tests/stratumStructure-tests.Rout.save | 54 ++-
optmatch-0.6-0/optmatch/tests/summary.optmatch-tests.R | 12
optmatch-0.6-0/optmatch/tests/summary.optmatch-tests.Rout.save | 72 ++++
35 files changed, 496 insertions(+), 186 deletions(-)
Author: Rolf Turner
Diff between hmm.discnp versions 0.0-9 dated 2009-02-26 and 0.1-0 dated 2009-09-28
Title: Hidden Markov models with discrete non-parametric observation
distributions.
Description: Fits hidden Markov models with discrete non-parametric
observation distributions to data sets. Simulates data from
such models. Finds most probable underlying hidden states and
most probable sequences of such states.
hmm.discnp-0.0-9/hmm.discnp/R/tidyup.R |only
hmm.discnp-0.0-9/hmm.discnp/inst/ChangeLog |only
hmm.discnp-0.1-0/hmm.discnp/ChangeLog |only
hmm.discnp-0.1-0/hmm.discnp/DESCRIPTION | 23 ++-
hmm.discnp-0.1-0/hmm.discnp/INDEX | 4
hmm.discnp-0.1-0/hmm.discnp/R/First.R | 7 -
hmm.discnp-0.1-0/hmm.discnp/R/RCS |only
hmm.discnp-0.1-0/hmm.discnp/R/check.yval.R |only
hmm.discnp-0.1-0/hmm.discnp/R/ffun.R | 13 +-
hmm.discnp-0.1-0/hmm.discnp/R/fitted.hmm.discnp.R |only
hmm.discnp-0.1-0/hmm.discnp/R/hmm.R | 108 ++++++++++-------
hmm.discnp-0.1-0/hmm.discnp/R/mat2list.R |only
hmm.discnp-0.1-0/hmm.discnp/R/mps.R | 28 +++-
hmm.discnp-0.1-0/hmm.discnp/R/pr.R |only
hmm.discnp-0.1-0/hmm.discnp/R/recurse.R | 10 -
hmm.discnp-0.1-0/hmm.discnp/R/revise.ispd.R | 39 ++++--
hmm.discnp-0.1-0/hmm.discnp/R/revise.rho.R | 12 -
hmm.discnp-0.1-0/hmm.discnp/R/sim.hmm.R | 34 +++--
hmm.discnp-0.1-0/hmm.discnp/R/sp.R |only
hmm.discnp-0.1-0/hmm.discnp/R/viterbi.R | 48 ++++---
hmm.discnp-0.1-0/hmm.discnp/inst/READ_ME | 3
hmm.discnp-0.1-0/hmm.discnp/inst/Ratfor |only
hmm.discnp-0.1-0/hmm.discnp/man/fitted.hmm.discnp.Rd |only
hmm.discnp-0.1-0/hmm.discnp/man/hmm.Rd | 40 ++++--
hmm.discnp-0.1-0/hmm.discnp/man/hmm.discnp-internal.Rd | 12 +
hmm.discnp-0.1-0/hmm.discnp/man/mps.Rd | 58 ++++-----
hmm.discnp-0.1-0/hmm.discnp/man/pr.Rd |only
hmm.discnp-0.1-0/hmm.discnp/man/sim.hmm.Rd | 46 ++++---
hmm.discnp-0.1-0/hmm.discnp/man/sp.Rd |only
hmm.discnp-0.1-0/hmm.discnp/man/viterbi.Rd | 54 ++++----
30 files changed, 332 insertions(+), 207 deletions(-)
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.20 dated 2009-08-25 and 4.23 dated 2009-09-28
caret-4.20/caret/R/makeCubistFiles.R |only caret-4.23/caret/DESCRIPTION | 10 ++++++---- caret-4.23/caret/R/createGrid.R | 3 +++ caret-4.23/caret/R/createModel.R | 3 ++- caret-4.23/caret/R/misc.R | 21 ++++++++++++++------- caret-4.23/caret/R/predictionFunction.R | 3 +-- caret-4.23/caret/R/selection.R | 3 ++- caret-4.23/caret/data/BloodBrain.RData |binary caret-4.23/caret/data/cox2.RData |binary caret-4.23/caret/data/mdrr.RData |binary caret-4.23/caret/data/tecator.RData |binary caret-4.23/caret/inst/CHANGES | 25 +++++++++++++++++++------ caret-4.23/caret/inst/doc/caretMisc.tex |only caret-4.23/caret/inst/doc/caretSelection.tex |only caret-4.23/caret/inst/doc/caretTrain.tex |only caret-4.23/caret/inst/doc/caretVarImp.tex |only caret-4.23/caret/man/classDist.Rd | 2 +- caret-4.23/caret/man/dotplot.varImp.train.Rd | 6 +++--- caret-4.23/caret/man/format.bagEarth.Rd | 3 +-- caret-4.23/caret/man/knn3.Rd | 2 +- caret-4.23/caret/man/knnreg.Rd | 2 +- caret-4.23/caret/man/lattice.Rd | 4 ++-- caret-4.23/caret/man/lattice.rfe.Rd | 4 ++-- caret-4.23/caret/man/plot.train.Rd | 2 +- caret-4.23/caret/man/plot.varImp.train.Rd | 2 +- caret-4.23/caret/man/plotObsVsPred.Rd | 2 +- caret-4.23/caret/man/plsda.Rd | 6 +++--- caret-4.23/caret/man/predictors.Rd | 12 ++++++------ caret-4.23/caret/man/resampleHist.Rd | 2 +- caret-4.23/caret/man/rfeFunctions.Rd | 3 ++- 30 files changed, 73 insertions(+), 47 deletions(-)
Author: S original by Venables & Ripley. R port by Brian Ripley
Diff between VR versions 7.2-48 dated 2009-08-05 and 7.2-49 dated 2009-09-28
Bundle: VR
Contains: MASS class nnet spatial
DESCRIPTION | 10 +++++-----
MASS/R/glmmPQL.R | 12 ++++++------
MASS/inst/scripts/ch12.R | 1 -
MASS/man/confint.Rd | 6 +++---
4 files changed, 14 insertions(+), 15 deletions(-)
Author: Dirk Eddelbuettel
Title: C++ classes to embed R in C++ applications
Description: C++ classes to embed R in C++ applications The RInside
packages makes it easier to have 'R inside' your C++
application by providing a few wrapper classes.
As R itself is embedded into your application, a shared library build
of R is required. This works on Linux and OS X, but may not on
Windows due to the way R is built on Windows.
Several examples are provided in the examples/ directory of the
installed package, and Doxygen-generated documentation of the
C++ classes is included as well.
Diff between RInside versions 0.1.0 dated 2009-09-20 and 0.1.1 dated 2009-09-28
DESCRIPTION | 18 ++++++----- inst/ChangeLog | 16 ++++++++++ inst/THANKS |only inst/examples/Makefile | 42 +++++++++++++++----------- inst/examples/rinside_sample0.cpp | 12 +++---- inst/examples/rinside_sample1.cpp | 38 ++++++++++++------------ inst/examples/rinside_sample2.cpp | 58 +++++++++++++++++++----------------- inst/examples/rinside_sample3.cpp | 38 ++++++++++++------------ inst/examples/rinside_test0.cpp | 16 +++++----- inst/examples/rinside_test1.cpp | 12 +++---- src/Makefile | 60 +++++++++++++++++--------------------- 11 files changed, 169 insertions(+), 141 deletions(-)
Author: Jouni Lehtonen
Diff between KFAS versions 0.4.1 dated 2009-09-18 and 0.4.2 dated 2009-09-28
Title: Multivariate Kalman filter and smoother, simulation smoother and
forecasting
Description: Package KFAS provides functions for fast Kalman filtering,
state and disturbance smoothing, forecasting and simulation of
multivariate time-variant state space models. All functions can
use exact diffuse initialisation when distributions of some or
all elements of initial state vector are unknown. Functions use
sequential processing algorithm, which is faster than standard
approach, and it also allows singularity of prediction error
variance matrix.
DESCRIPTION | 16 +++----
NAMESPACE | 2
R/KFAS.R | 81 ++++++++++++++++++++++++-----------
man/distsmoother.Rd |only
src/distsmooth.f90 |only
src/kf.f90 | 4 -
src/ks.f90 | 118 +++++++++++++++++++++++++---------------------------
7 files changed, 124 insertions(+), 97 deletions(-)
Author: Holger Hoefling
Title: The pseudo-likelihood method for pairwise binary markov networks
Description: This package implements approximate and exact methods for
pairwise binary markov models. The exact method uses an
implementation of the junction tree algorithm for binary
graphical models. For more details see the help files
Diff between BMN versions 1.0 dated 2009-03-26 and 1.01 dated 2009-09-28
DESCRIPTION | 8 ++++---- src/Makevars |only src/Makevars.win |only 3 files changed, 4 insertions(+), 4 deletions(-)