Author: Compiled by Adrian Trapletti
Diff between tseries versions 0.10-20 dated 2009-09-10 and 0.10-21 dated 2009-10-04
Title: Time series analysis and computational finance
Description: Package for time series analysis and computational finance
ChangeLog | 7 +++++++
DESCRIPTION | 8 ++++----
man/portfolio.optim.Rd | 6 ++++++
3 files changed, 17 insertions(+), 4 deletions(-)
Author: S original by Trevor Hastie
Diff between princurve versions 1.1-9 dated 2007-07-13 and 1.1-10 dated 2009-10-04
Title: Fits a Principal Curve in Arbitrary Dimension
Description: fits a principal curve to a data matrix in arbitrary
dimensions
ChangeLog | 8 +
DESCRIPTION | 14 +--
R/principal.curve.R | 214 +++++++++++++++++++++++++++++++++-------------
man/principal.curve.Rd | 11 +-
man/princurve-internal.Rd | 6 -
5 files changed, 183 insertions(+), 70 deletions(-)
Author: S original by David James
Diff between chron versions 2.3-31 dated 2009-09-10 and 2.3-32 dated 2009-10-04
Title: Chronological objects which can handle dates and times
Description: Chronological objects which can handle dates and times
ChangeLog | 6 ++++++
DESCRIPTION | 8 ++++----
R/times.R | 5 ++++-
3 files changed, 14 insertions(+), 5 deletions(-)
Author: Marek Gagolewski
Diff between phull versions 0.1-1 dated 2009-10-03 and 0.2-1 dated 2009-10-04
Title: p-hull: a generalization of convex hull, X-Y hull and bounding
rectangle
Description: The package computes the p-hull of a finite planar set,
which is a generalization of the convex hull, X-Y hull and
bounding rectangle. A fast, O(n log n) Graham-scan based
routine is used.
CHANGELOG |only
DESCRIPTION | 8 ++++----
NAMESPACE | 3 ++-
R/as.matrix.phull.R | 19 +++++++++++++++----
R/draw.phull.R | 37 +++++++++++++++++++++++++++----------
R/phull.R | 16 ++--------------
R/phull_computewithr.R | 8 ++++++--
demo/00Index | 3 ++-
demo/rotate.R |only
inst |only
man/phull.Rd | 2 +-
11 files changed, 59 insertions(+), 37 deletions(-)
Author: Julien Martin
Title: Power analysis for random effects in mixed models
Description: Simulation functions to assess or explore the power of a
dataset to estimates significant random effects (intercept or
slope) in a mixed model. The functions are based on the "lme4"
package.
Diff between pamm versions 0.2 dated 2009-06-14 and 0.5 dated 2009-10-04
DESCRIPTION | 8 ++--- R/EAMM.R | 4 +- R/PAMM.R | 4 +- R/SSF.R | 4 +- R/plot.EAMM.R | 21 ++++++++------ man/EAMM.Rd | 33 ++++++++++++----------- man/PAMM.Rd | 28 ++++++++++--------- man/SSF.Rd | 22 ++++++++------- man/pamm-package.Rd | 7 ++-- man/plot.EAMM.Rd | 18 ++++++------ man/plot.PAMM.Rd | 73 ++++++++++++++++++++++++++-------------------------- man/plot.SSF.Rd | 14 ++++----- 12 files changed, 122 insertions(+), 114 deletions(-)
Author: David A. James
Title: SQLite interface for R
Description: Database Interface R driver for SQLite. This package
embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the
SQLite engine (version 3.6.4) is included.
Diff between RSQLite versions 0.7-2 dated 2009-08-14 and 0.7-3 dated 2009-10-04
DESCRIPTION | 6 configure | 1520 +++++++++++++++++++-------------------------- configure.in | 2 inst/NEWS | 8 man/SQLite.Rd | 4 man/dbReadTable-methods.Rd | 4 man/safe.write.Rd | 4 7 files changed, 667 insertions(+), 881 deletions(-)
Author: Lin et al.
Title: Testing for monotonic relationship between gene expression and
doses in a microarray experiment.
Description: Several testing procedures including the global likelihood
ratio test (Bartholomew, 1961), Williams (1971, 1972), Marcus
(1976), M (Hu et al. 2005) and the modified M (Lin et al. 2007)
are used to test for the monotonic trend in gene expression
with respect to doses. BH (Benjamini and Hochberg 1995) and BY
(Benjamini and Yekutilie 2004) FDR controlling procedures are
applied to adjust the raw p-values obtained from the
permutations.
Diff between IsoGene versions 1.0-14 dated 2009-06-14 and 1.0-15 dated 2009-10-04
DESCRIPTION | 12 ++++++------ NAMESPACE | 1 + R/IsoGene1.R | 48 ++++++++++++++++++++++++------------------------ R/IsoGenem.R | 6 +++--- R/IsoGenemSAM.R | 4 ++-- R/IsoPlot.R | 4 ++-- R/IsoTestSAM.R | 2 +- R/Isofudge.R | 4 ++-- data/dopamine.rda |only inst/NEWS | 2 ++ man/IsoSAMPlot.Rd | 4 ++-- man/IsoTestSAM.Rd | 16 ++++++++++------ man/Isoallfdr.Rd | 4 ++-- man/Isofudge.Rd | 9 ++++----- man/Isoqqstat.Rd | 9 ++++----- man/Isoqval.Rd | 4 ++-- man/dopamine.Rd |only 17 files changed, 67 insertions(+), 62 deletions(-)
Author: Richard M. Heiberger
Title: Statistical Analysis and Data Display: Heiberger and Holland
Description: Support software for Statistical Analysis and Data Display
(Springer, ISBN 0-387-40270-5). This contemporary presentation
of statistical methods features extensive use of graphical
displays for exploring data and for displaying the analysis.
The authors demonstrate how to analyze data---showing code,
graphics, and accompanying computer listings---for all the
methods they cover. They emphasize how to construct and
interpret graphs, discuss principles of graphical design, and
show how accompanying traditional tabular results are used to
confirm the visual impressions derived directly from the
graphs. Many of the graphical formats are novel and appear here
for the first time in print. All chapters have exercises.
Diff between HH versions 2.1-30 dated 2009-08-19 and 2.1-32 dated 2009-10-04
HH-2.1-30/HH/R/glht.new.R |only HH-2.1-30/HH/R/mcp.993.R |only HH-2.1-30/HH/man/glht.mcp.993.Rd |only HH-2.1-32/HH/DESCRIPTION | 12 ++-- HH-2.1-32/HH/R/F.curve.R | 52 ++++++++++++----- HH-2.1-32/HH/R/chisq.curve.R | 27 ++++++++- HH-2.1-32/HH/R/norm.curve.R | 1 HH-2.1-32/HH/demo/MMC.WoodEnergy.R | 2 HH-2.1-32/HH/demo/MMC.cc176.R | 4 - HH-2.1-32/HH/man/F.curve.Rd | 28 +++++++-- HH-2.1-32/HH/man/GSremove.Rd | 10 +++ HH-2.1-32/HH/man/HH_regsubsets.Rd | 9 +-- HH-2.1-32/HH/man/X.residuals.Rd | 18 +++++- HH-2.1-32/HH/man/ae.dotplot.Rd | 25 ++++++-- HH-2.1-32/HH/man/ancova.Rd | 14 +++- HH-2.1-32/HH/man/anova.mean.Rd | 16 +++-- HH-2.1-32/HH/man/aov.sufficient.Rd | 30 ++++++++-- HH-2.1-32/HH/man/arima.diag.hh.Rd | 28 ++++++++- HH-2.1-32/HH/man/arma.loop.Rd | 20 +++++- HH-2.1-32/HH/man/as.multicomp.Rd | 64 ++++++++++++++++++--- HH-2.1-32/HH/man/cp.Rd | 30 +++++++++- HH-2.1-32/HH/man/diag.maybe.null.Rd | 10 +++ HH-2.1-32/HH/man/export.eps.Rd | 38 ++++++++++++- HH-2.1-32/HH/man/gof.calculation.Rd | 20 ++++++ HH-2.1-32/HH/man/interaction2wt.Rd | 21 +++++-- HH-2.1-32/HH/man/ladder.Rd | 10 ++- HH-2.1-32/HH/man/lm.case.Rd | 11 +++ HH-2.1-32/HH/man/lm.regsubsets.Rd | 5 + HH-2.1-32/HH/man/lmatRows.Rd | 10 ++- HH-2.1-32/HH/man/mmc.Rd | 67 +++++++++++++++++++---- HH-2.1-32/HH/man/mmc.mean.Rd | 27 ++++++++- HH-2.1-32/HH/man/objip.Rd | 11 +++ HH-2.1-32/HH/man/panel.bwplot.intermediate.hh.Rd | 4 - HH-2.1-32/HH/man/panel.bwplott.Rd | 20 +++++- HH-2.1-32/HH/man/panel.dotplot.tb.Rd | 6 +- HH-2.1-32/HH/man/panel.pairs.hh.Rd | 19 +++++- HH-2.1-32/HH/man/plot.multicomp.Rd | 17 +++++ HH-2.1-32/HH/man/position.Rd | 35 +++++++++--- HH-2.1-32/HH/man/regr2.plot.Rd | 31 +++++++++- HH-2.1-32/HH/man/residual.plots.Rd | 11 +++ HH-2.1-32/HH/man/summary.arma.loop.Rd | 10 +++ HH-2.1-32/HH/man/t.trellis.Rd | 13 +++- HH-2.1-32/HH/man/tsdiagplot.Rd | 18 +++++- HH-2.1-32/HH/man/vif.Rd | 20 ++++++ HH-2.1-32/HH/man/xysplom.Rd | 21 ++++++- 45 files changed, 697 insertions(+), 148 deletions(-)