Mon, 05 Oct 2009

Package diseasemapping updated to version 0.5.3 with previous version 0.4 dated 2009-06-07

Author: Patrick Brown
Title: Calculate observed and expected disease incidence counts from a case file and population data.
Description: works with regular data set file and shape file.

Diff between diseasemapping versions 0.4 dated 2009-06-07 and 0.5.3 dated 2009-10-05

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Package gstat updated to version 0.9-63 with previous version 0.9-62 dated 2009-07-18

Author: Edzer J. Pebesma and others
Title: geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point or block (co)kriging, sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions.

Diff between gstat versions 0.9-62 dated 2009-07-18 and 0.9-63 dated 2009-10-05

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Package Rcmdr updated to version 1.5-3 with previous version 1.5-2 dated 2009-09-06

Author: John Fox , with contributions from Michael Ash, Theophilius Boye, Stefano Calza, Andy Chang, Philippe Grosjean, Richard Heiberger, G. Jay Kerns, Renaud Lancelot, Matthieu Lesnoff, Uwe Ligges, Samir Messad, Martin Maechler, Robert Muenchen, Duncan Murdoch, Erich Neuwirth, Dan Putler, Brian Ripley, Miroslav Ristic, and Peter Wolf.
Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.

Diff between Rcmdr versions 1.5-2 dated 2009-09-06 and 1.5-3 dated 2009-10-05

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Package rms updated to version 2.1-0 with previous version 2.0-2 dated 2009-09-07

Author: Frank E Harrell Jr
Title: Regression Modeling Strategies
Description: Regression modeling, testing, estimation, validation, graphics, prediction, and typesetting by storing enhanced model design attributes in the fit. rms is a collection of about 225 functions that assist with and streamline modeling. It also contains functions for binary and ordinal logistic regression models and the Buckley-James multiple regression model for right-censored responses, and implements penalized maximum likelihood estimation for logistic and ordinary linear models. rms works with almost any regression model, but it was especially written to work with binary or ordinal logistic regression, Cox regression, accelerated failure time models, ordinary linear models, the Buckley-James model, generalized least squares for serially or spatially correlated observations, generalized linear models, and quantile regression.

Diff between rms versions 2.0-2 dated 2009-09-07 and 2.1-0 dated 2009-10-05

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Package rgdal updated to version 0.6-19 with previous version 0.6-18 dated 2009-09-06

Author: Timothy H. Keitt , Roger Bivand , Edzer Pebesma , Barry Rowlingson
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data Abstraction Library (GDAL) (>= 1.3.1) and access to projection/transformation operations from the PROJ.4 library. The GDAL and PROJ.4 libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both GDAL raster and OGR vector map data can be imported into R, and GDAL raster data and OGR vector data exported. Use is made of classes defined in the sp package.

Diff between rgdal versions 0.6-18 dated 2009-09-06 and 0.6-19 dated 2009-10-05

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Package nlreg updated to version 1.2-0 with previous version 1.1-3 dated 2009-09-24

Author: S original by Alessandra R. Brazzale and Ruggero Bellio . R port by Alessandra R. Brazzale , following earlier work by Douglas Bates.
Title: Higher Order Inference for Nonlinear Heteroscedastic Models
Description: Likelihood inference based on higher order approximations for nonlinear models with possibly non constant variance

Diff between nlreg versions 1.1-3 dated 2009-09-24 and 1.2-0 dated 2009-10-05

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Package nlme updated to version 3.1-95 with previous version 3.1-94 dated 2009-09-04

Author: Jose Pinheiro (S version), Douglas Bates (up to 2007), Saikat DebRoy (up to 2002), Deepayan Sarkar (up to 2005), the R Core team.
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.

Diff between nlme versions 3.1-94 dated 2009-09-04 and 3.1-95 dated 2009-10-05

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Package marg updated to version 1.2-0 with previous version 1.1-3 dated 2009-09-24

Author: S original by Alessandra R. Brazzale . R port by Alessandra R. Brazzale , following earlier work by Douglas Bates.
Title: Approximate marginal inference for regression-scale models
Description: Likelihood inference based on higher order approximations for linear nonnormal regression models

Diff between marg versions 1.1-3 dated 2009-09-24 and 1.2-0 dated 2009-10-05

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Package ks updated to version 1.6.7 with previous version 1.6.6 dated 2009-08-05

Author: Tarn Duong
Title: Kernel smoothing
Description: Kernel density estimators and kernel discriminant analysis for multivariate data

Diff between ks versions 1.6.6 dated 2009-08-05 and 1.6.7 dated 2009-10-05

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Package csampling updated to version 1.2-0 with previous version 1.1-3 dated 2009-09-24

Author: S original by Alessandra R. Brazzale . R port by Alessandra R. Brazzale .
Title: Functions for Conditional Simulation in Regression-Scale Models
Description: Monte Carlo conditional inference for the parameters of a linear nonnormal regression model

Diff between csampling versions 1.1-3 dated 2009-09-24 and 1.2-0 dated 2009-10-05

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Package cond updated to version 1.2-0 with previous version 1.1-3 dated 2009-09-24

Author: S original by Alessandra R. Brazzale . R port by Alessandra R. Brazzale , following earlier work by Douglas Bates.
Title: Approximate conditional inference for logistic and loglinear models
Description: Higher order likelihood-based inference for logistic and loglinear models

Diff between cond versions 1.1-3 dated 2009-09-24 and 1.2-0 dated 2009-10-05

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Package ape updated to version 2.4 with previous version 2.3-3 dated 2009-09-22

Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong, Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel, Gangolf Jobb, Christoph Heibl, Daniel Lawson, Vincent Lefort, Pierre Legendre, Jim Lemon, Yvonnick Noel, Johan Nylander, Rainer Opgen-Rhein, Korbinian Strimmer, Damien de Vienne
Title: Analyses of Phylogenetics and Evolution
Description: ape provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, analyses of diversification and macroevolution, computing distances from allelic and nucleotide data, reading nucleotide sequences, and several tools such as Mantel's test, computation of minimum spanning tree, generalized skyline plots, estimation of absolute evolutionary rates and clock-like trees using mean path lengths, non-parametric rate smoothing and penalized likelihood. Phylogeny estimation can be done with the NJ, BIONJ, and ME methods.

Diff between ape versions 2.3-3 dated 2009-09-22 and 2.4 dated 2009-10-05

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Package YourCast updated to version 1.1-5 with previous version 1.1-3 dated 2009-09-19

Author: Federico Girosi Gary King Jon Bischof
Title: YourCast
Description: YourCast makes time series cross-sectional forecasts with multiple cross-sections based on your assumptions. It allows a variety of smoothing assumptions based on similarities among the levels, trends, or interactions in the expected value of the dependent variable rather than the coefficients. YourCast implements ideas in the book Federico Girosi and Gary King. DEMOGRAPHIC FORECASTING. Princeton University Press, 2008; see http://gking.harvard.edu/files/smooth/

Diff between YourCast versions 1.1-3 dated 2009-09-19 and 1.1-5 dated 2009-10-05

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New package WMCapacity with initial version 0.9
Package: WMCapacity
Type: Package
Title: GUI implementing Bayesian working memory models
Version: 0.9
Date: 2009-06-20
Depends: gtools, coda, tcltk, methods
Author: Richard D. Morey
Maintainer: Richard D. Morey
Description: A GUI R implementation of hierarchical Bayesian models of working memory, used for analyzing change detection data.
License: GPL-2
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: wmcapacity
Repository/R-Forge/Revision: 8
Date/Publication: 2009-10-05 15:01:08
Packaged: 2009-10-04 20:09:21 UTC; rforge

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Package FieldSim updated to version 2.1 with previous version 1.2 dated 2007-11-20

Author: Alexandre Brouste , and Sophie Lambert-Lacroix .
Title: Random fields simulations
Description: This package provides routines for simulate random fields.

Diff between FieldSim versions 1.2 dated 2007-11-20 and 2.1 dated 2009-10-05

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Package psych updated to version 1.0-81 with previous version 1.0-80 dated 2009-09-30

Author: William Revelle
Title: Procedures for Psychological, Psychometric, and Personality Research
Description: A number of routines for personality, psychometrics and experimental psychology. Functions are primarily for scale construction using factor analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Functions for simulating particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. For more information, see the personality-project.org/r webpage.

Diff between psych versions 1.0-80 dated 2009-09-30 and 1.0-81 dated 2009-10-05

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Package lattice updated to version 0.17-26 with previous version 0.17-25 dated 2009-05-15

Author: Deepayan Sarkar
Title: Lattice Graphics
Description: Implementation of Trellis Graphics. See ?Lattice for a brief introduction

Diff between lattice versions 0.17-25 dated 2009-05-15 and 0.17-26 dated 2009-10-05

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 man/strip.default.Rd                     |    2 
 man/tmd.Rd                               |    2 
 man/trellis.device.Rd                    |    2 
 man/trellis.object.Rd                    |    2 
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 man/update.trellis.Rd                    |    2 
 man/utilities.3d.Rd                      |    2 
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 po/R-de.po                               |    6 
 po/R-en@quot.po                          |    6 
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 73 files changed, 336 insertions(+), 117 deletions(-)

More information about lattice at CRAN
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Package intamapInteractive updated to version 1.0-7 with previous version 1.0-6 dated 2009-10-02

Author: Edzer Pebesma , Jon Skoien and others
Title: procedures for automated interpolation - methods only to be used interactively, not included in intamap package
Description: A package that provides classes and methods for automated spatial interpolation.

Diff between intamapInteractive versions 1.0-6 dated 2009-10-02 and 1.0-7 dated 2009-10-05

 DESCRIPTION                    |    8 
 tests/optimizingTest.R         |    8 
 tests/optimizingTest.Rout.save | 1938 +----------------------------------------
 3 files changed, 60 insertions(+), 1894 deletions(-)

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Package RSiteSearch updated to version 1.0-6 with previous version 1.0-4 dated 2009-06-29

Author: Spencer Graves, Sundar Dorai-Raj, and Romain Francois
Title: RSiteSearch
Description: Alternative interfaces to RSiteSearch; deprecated: use 'sos'

Diff between RSiteSearch versions 1.0-4 dated 2009-06-29 and 1.0-6 dated 2009-10-05

 DESCRIPTION                 |   11 ++++++-----
 R/RSiteSearch.function.R    |    4 ++++
 man/RSiteSearch.function.Rd |    2 +-
 3 files changed, 11 insertions(+), 6 deletions(-)

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Package MLCM updated to version 0.0-6 with previous version 0.0-5 dated 2009-10-01

Author: Kenneth Knoblauch and Laurence T. Maloney
Title: Maximum Likelihood Conjoint Measurement
Description: Conjoint measurement is a psychophysical procedure in which stimulus pairs are presented that vary along 2 or more dimensions and the observer is required to compare the stimuli along one of them. This package contains functions to estimate the contribution of the n scales to the judgment by a maximum likelihood method under several hypotheses of how the perceptual dimensions interact.

Diff between MLCM versions 0.0-5 dated 2009-10-01 and 0.0-6 dated 2009-10-05

 DESCRIPTION            |    8 ++++----
 NAMESPACE              |    2 ++
 R/coef.mlcm.R          |    2 +-
 R/mlcm.formula.R       |    6 +++---
 R/plot.mlcm.R          |   21 +++++++++++++++++++++
 R/print.summary.mlcm.R |   17 +++++++++++------
 R/summary.mlcm.R       |    6 +++++-
 inst/NEWS              |   15 ++++++++++++++-
 inst/ToDo              |    7 ++++++-
 man/mlcm.Rd            |   27 ++++++++++++++++++++++++++-
 man/plot.mlcm.Rd       |    6 +++++-
 11 files changed, 98 insertions(+), 19 deletions(-)

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Package MCPMod updated to version 1.0-5 with previous version 1.0-4 dated 2009-09-18

Author: Bjoern Bornkamp, Jose Pinheiro and Frank Bretz
Title: Design and Analysis of Dose-Finding Studies
Description: This package implements a methodology for the design and analysis of dose-response studies that combines aspects of multiple comparison procedures and modeling approaches (Bretz, Pinheiro and Branson, 2005, Biometrics 61, 738-748). The package provides tools for the analysis of dose finding trials as well as a variety of tools necessary to plan a trial to be conducted with the MCPMod methodology.

Diff between MCPMod versions 1.0-4 dated 2009-09-18 and 1.0-5 dated 2009-10-05

 ChangeLog             |    9 
 DESCRIPTION           |    8 
 R/planMCPMod.R        |   17 
 inst/doc/MCPMod.pdf   | 1994 +++++++++++++++++++++++++-------------------------
 inst/doc/Rplots.pdf   |  736 +++++++++---------
 man/MCPMod-package.Rd |    4 
 man/MCPMod.Rd         |   12 
 7 files changed, 1408 insertions(+), 1372 deletions(-)

More information about MCPMod at CRAN
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