Author: Claudio Lupi
Title: Hansen's Covariate-Augmented Dickey-Fuller (CADF) Test
Description: This package performs Hansen's (1995) Covariate-Augmented
Dickey-Fuller (CADF) test. The only required argument is y, the
univariate time series to be tested. If no stationary covariate
X is passed to the procedure, then an ordinary ADF test is
performed. The p-values of the test are computed using a
procedure proposed in Costantini, Lupi and Popp (2007),
illustrated in Lupi (2009).
Diff between CADFtest versions 0.1-0 dated 2008-12-29 and 0.3-0 dated 2009-10-06
CADFtest-0.1-0/CADFtest/Read-and-delete-me |only CADFtest-0.3-0/CADFtest/DESCRIPTION | 39 CADFtest-0.3-0/CADFtest/NAMESPACE | 32 CADFtest-0.3-0/CADFtest/NEWS |only CADFtest-0.3-0/CADFtest/R/CADFpvalues.R | 3138 ---------------------- CADFtest-0.3-0/CADFtest/R/CADFtest.R | 11 CADFtest-0.3-0/CADFtest/R/CADFtest.default.R | 457 +-- CADFtest-0.3-0/CADFtest/R/CADFtest.formula.R | 145 - CADFtest-0.3-0/CADFtest/R/plot.CADFtest.R |only CADFtest-0.3-0/CADFtest/R/print.CADFtestsummary.R |only CADFtest-0.3-0/CADFtest/R/residuals.CADFtest.R |only CADFtest-0.3-0/CADFtest/R/summary.CADFtest.R | 121 CADFtest-0.3-0/CADFtest/R/update.CADFtest.R |only CADFtest-0.3-0/CADFtest/data |only CADFtest-0.3-0/CADFtest/inst/CITATION | 30 CADFtest-0.3-0/CADFtest/inst/doc |only CADFtest-0.3-0/CADFtest/man/CADFpvalues.Rd | 66 CADFtest-0.3-0/CADFtest/man/CADFtest.Rd | 219 - CADFtest-0.3-0/CADFtest/man/coeffs_ct.Rd |only CADFtest-0.3-0/CADFtest/man/plot.CADFFtest.Rd |only CADFtest-0.3-0/CADFtest/man/residuals.CADFtest.Rd |only CADFtest-0.3-0/CADFtest/man/summary.CADFtest.Rd | 55 CADFtest-0.3-0/CADFtest/man/update.CADFtest.Rd |only 23 files changed, 686 insertions(+), 3627 deletions(-)
Author: Xianhong Xie
Diff between rgcvpack versions 0.1-2 dated 2007-09-06 and 0.1-3 dated 2009-10-06
Title: R Interface for GCVPACK Fortran Package
Description: Thin plate spline fitting and prediction
DESCRIPTION | 14 -
INDEX | 4
NAMESPACE | 12 -
R/rgcvpack.R | 532 ++++++++++++++++++++++++++---------------------------
R/zzz.R | 44 ++--
man/fitTps.Rd | 238 +++++++++++------------
man/predict.Tps.Rd | 118 +++++------
7 files changed, 482 insertions(+), 480 deletions(-)
Author: REvolution Computing
Title: Iterator construct for R
Description: Support for iterators, which allow a programmer to
traverse through all the elements of a vector, list, or other
collection of data.
Diff between iterators versions 1.0.2 dated 2009-07-21 and 1.0.3 dated 2009-10-06
iterators-1.0.2/iterators/inst/doc/iterators.tex |only iterators-1.0.3/iterators/DESCRIPTION | 6 +-- iterators-1.0.3/iterators/R/aslist.R | 14 +++---- iterators-1.0.3/iterators/inst/doc/iterators.Rnw | 43 +++++++++++++++++++---- iterators-1.0.3/iterators/inst/doc/iterators.pdf |binary iterators-1.0.3/iterators/inst/doc/writing.Rnw |only iterators-1.0.3/iterators/inst/doc/writing.pdf |only iterators-1.0.3/iterators/inst/examples |only iterators-1.0.3/iterators/test/chunksizeTest.R |only iterators-1.0.3/iterators/test/recycleTest.R |only iterators-1.0.3/iterators/test/runTestSuite.sh | 2 - 11 files changed, 48 insertions(+), 17 deletions(-)
Author: Gabor Csardi
Diff between isa2 versions 0.1 dated 2009-06-05 and 0.2 dated 2009-10-06
Title: The Iterative Signature Algorithm
Description: The ISA is a biclustering algorithm that finds modules in
an input matrix. A module or bicluster is a block of the
reordered input matrix.
isa2-0.1/isa2/inst/doc/ISA_tutorial.Rnw |only
isa2-0.2/isa2/DESCRIPTION | 8 +-
isa2-0.2/isa2/R/AllGenerics.R | 1
isa2-0.2/isa2/R/insilico.R | 2
isa2-0.2/isa2/R/isa3.R | 80 +++++++++++++++++++++++++--
isa2-0.2/isa2/R/robustness.R | 1
isa2-0.2/isa2/inst/doc/ISA_parallel.pdf |binary
isa2-0.2/isa2/inst/doc/ISA_parallel.vignette | 44 ++++++++++----
isa2-0.2/isa2/inst/doc/ISA_tutorial.pdf |binary
isa2-0.2/isa2/inst/doc/ISA_tutorial.vignette |only
isa2-0.2/isa2/man/aaa-package.Rd | 1
isa2-0.2/isa2/man/isa.Rd | 3 +
isa2-0.2/isa2/man/isa.iterate.Rd | 14 +++-
isa2-0.2/isa2/man/isa.normalize.Rd | 1
isa2-0.2/isa2/man/isa.sweep.Rd | 20 +++++-
isa2-0.2/isa2/man/plot.modules.Rd | 2
isa2-0.2/isa2/man/robustness.Rd | 4 -
17 files changed, 145 insertions(+), 36 deletions(-)
Author: REvolution Computing
Title: Foreach looping construct for R
Description: Support for the foreach looping construct. Foreach is an
idiom that allows for iterating over elements in a collection,
without the use of an explicit loop counter. This package in
particular is intended to be used for its return value, rather
than for its side effects. In that sense, it is similar to the
standard lapply function, but doesn't require the evaluation of
a function. Using foreach without side effects also
facilitates executing the loop in parallel.
Diff between foreach versions 1.2.1 dated 2009-06-30 and 1.3.0 dated 2009-10-06
foreach-1.2.1/foreach/inst/examples/rf2.R |only foreach-1.2.1/foreach/inst/examples/rf3.R |only foreach-1.3.0/foreach/DESCRIPTION | 6 +-- foreach-1.3.0/foreach/NAMESPACE | 7 +++- foreach-1.3.0/foreach/R/zzz.R | 8 +++-- foreach-1.3.0/foreach/demo |only foreach-1.3.0/foreach/inst/doc/foreach.pdf |binary foreach-1.3.0/foreach/inst/doc/nested.Rnw |only foreach-1.3.0/foreach/inst/doc/nested.Rnw.bk2 |only foreach-1.3.0/foreach/inst/doc/nested.pdf |only foreach-1.3.0/foreach/inst/examples/apply.R | 5 +-- foreach-1.3.0/foreach/inst/examples/bigmax.R | 8 +---- foreach-1.3.0/foreach/inst/examples/bigmean.R | 8 +---- foreach-1.3.0/foreach/inst/examples/bootpar.R | 5 +-- foreach-1.3.0/foreach/inst/examples/bootpar2.R | 12 +------ foreach-1.3.0/foreach/inst/examples/for.R | 7 +--- foreach-1.3.0/foreach/inst/examples/matmul2.R | 6 +-- foreach-1.3.0/foreach/inst/examples/rf.R | 15 ++++++--- foreach-1.3.0/foreach/inst/examples/sinc2.R | 9 ++--- foreach-1.3.0/foreach/inst/examples/sqlite.R | 6 +-- foreach-1.3.0/foreach/inst/examples/tuneRF.R |only foreach-1.3.0/foreach/man/foreach-ext.Rd | 4 ++ foreach-1.3.0/foreach/man/foreach-package.Rd | 13 ++++++++ foreach-1.3.0/foreach/test/runTestSuite.sh | 39 ++++++++++++++++++++++--- foreach-1.3.0/foreach/test/sqrt.R |only foreach-1.3.0/foreach/test/stressTest.R |only foreach-1.3.0/foreach/test/test.log |only foreach-1.3.0/foreach/test/tsqrt.R |only 28 files changed, 103 insertions(+), 55 deletions(-)
Author: REvolution Computing
Title: Foreach parallel adaptor for the multicore package
Description: Provides a parallel backend for the %dopar% function using
Simon Urbanek's multicore package.
Diff between doMC versions 1.1.1 dated 2009-06-30 and 1.2.0 dated 2009-10-06
DESCRIPTION | 8 +++--- NEWS |only R/doMC.R | 62 +++++++++++++++++++++++++++++++++++++++++++++++++--- demo |only inst |only man/doMC-package.Rd |only test |only 7 files changed, 63 insertions(+), 7 deletions(-)
Author: Martin Maechler, based on S original by Peter Rousseeuw
Diff between cluster versions 1.12.0 dated 2009-05-13 and 1.12.1 dated 2009-10-06
Title: Cluster Analysis Extended Rousseeuw et al.
Description: Cluster Analysis, extended original from Peter Rousseeuw,
Anja Struyf and Mia Hubert.
ChangeLog | 9 +++++++++
DESCRIPTION | 8 ++++----
man/ellipsoidhull.Rd | 2 +-
3 files changed, 14 insertions(+), 5 deletions(-)
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.24 dated 2009-09-30 and 4.25 dated 2009-10-06
caret-4.24/caret/R/makeCubistFiles.R |only caret-4.25/caret/DESCRIPTION | 10 - caret-4.25/caret/R/misc.R | 11 + caret-4.25/caret/R/rfe.R | 238 +++++++++++++++++---------- caret-4.25/caret/inst/CHANGES | 7 caret-4.25/caret/inst/doc/caretMisc.tex |only caret-4.25/caret/inst/doc/caretSelection.tex |only caret-4.25/caret/inst/doc/caretTrain.tex |only caret-4.25/caret/inst/doc/caretVarImp.tex |only caret-4.25/caret/man/createGrid.Rd | 14 + caret-4.25/caret/man/rfe.Rd | 54 ++++++ caret-4.25/caret/man/rfeControl.Rd | 8 12 files changed, 250 insertions(+), 92 deletions(-)
Author: Andreas Ruckstuhl, Thomas Unternaehrer, Rene Locher
Title: Utilities of Institute of Data Analyses and Process Design
(www.idp.zhaw.ch)
Description: The IDPmisc package contains different high-level graphics
functions for displaying large datasets, displaying circular
data in a very flexible way, finding local maxima, brewing
color ramps, drawing nice arrows, zooming 2D-plots, creating
figures with differently colored margin and plot region. In
addition, the package contains auxiliary functions for data
manipulation like omitting observations with irregular values
or selecting data by logical vectors, which include NAs. Other
functions are especially useful in spectroscopy and analyses of
environmental data: robust baseline fitting, finding peaks in
spectra.
Diff between IDPmisc versions 1.1.03 dated 2009-08-04 and 1.1.05 dated 2009-10-06
IDPmisc-1.1.03/IDPmisc/R/longts.plot.R |only IDPmisc-1.1.05/IDPmisc/ChangeLog | 35 +- IDPmisc-1.1.05/IDPmisc/DESCRIPTION | 8 IDPmisc-1.1.05/IDPmisc/R/LegendAndTitle.R |only IDPmisc-1.1.05/IDPmisc/R/drawleg.R |only IDPmisc-1.1.05/IDPmisc/R/inf.omit.R |only IDPmisc-1.1.05/IDPmisc/R/longtsPlot.R | 344 +++++++++++++------------- IDPmisc-1.1.05/IDPmisc/R/plotdat.R |only IDPmisc-1.1.05/IDPmisc/R/rose.grob.R | 18 - IDPmisc-1.1.05/IDPmisc/man/IDPmisc-package.Rd | 4 IDPmisc-1.1.05/IDPmisc/man/longtsPlot.Rd | 36 +- 11 files changed, 236 insertions(+), 209 deletions(-)