Author: Duncan Murdoch
Title: Support for orientation data
Description: Representations, conversions and display of orientation
SO(3) data. See the orientlib help topic for details.
Diff between orientlib versions 0.9.3 dated 2009-09-03 and 0.10.2 dated 2009-10-13
DESCRIPTION | 31 ++++++++++++++----------------- NEWS | 12 ------------ R/orientlib.r | 2 +- man/weighted.mean-methods.Rd | 8 ++++---- 4 files changed, 19 insertions(+), 34 deletions(-)
Author: Markus Loecher, Sense Networks
Title: Overlays on Google map tiles in R
Description: This package serves two purposes: (i) Provide a
comfortable R interface to query the Google server for static
maps, and (ii) Use the map as a background image to overlay
plots within R. This requires proper coordinate scaling. NOTE:
To do anything but downloading static map tiles, RgoogleMaps
needs EITHER rgdal OR ReadImages OR rimage installed ! Such an
OR dependency is difficult to express in the Depends field, so
I moved those packages to suggested. rgdal is your package if
you prefer png file format and ReadImages or rimage if you
prefer jpg format. In the latter cases, you will also need the
libjpeg library installed.
Diff between RgoogleMaps versions 1.1.5 dated 2009-07-26 and 1.1.6 dated 2009-10-13
DESCRIPTION | 10 +++++----- R/XY2LatLon.R |only inst/doc/RgoogleMaps-intro.Rnw | 37 ++++++++++++++++++++++++++++++++++++- inst/doc/RgoogleMaps-intro.pdf |binary man/RgoogleMaps-package.Rd | 4 ++-- man/XY2LatLon.Rd |only 6 files changed, 43 insertions(+), 8 deletions(-)
Author: A.I. McLeod and Ying Zhang
Title: Subset AR Model Fitting
Description: Complete functions are given for model identification,
estimation and diagnostic checking for AR and subset AR models.
Two types of subset AR models are supported. One family of
subset AR models, denoted by ARp, is formed by taking subet of
the original AR coefficients and in the other, denoted by ARz,
subsets of the partial autocorrelations are used. The main
advantage of the ARz model is its applicability to very large
order models.
Diff between FitAR versions 1.74 dated 2008-11-07 and 1.79 dated 2009-10-13
DESCRIPTION | 33 +++++++++++++++++++++------------ R/FitARp.R | 11 +++++++++-- R/GetFitARpLS.R | 17 +++++++++-------- R/LBQPlot.R | 15 ++++++--------- R/LjungBoxTest.R | 10 ++++------ R/PlotARSdf.R | 6 +++--- R/SelectModel.R | 42 ++++++++++++++++++++++++++++++++++-------- R/SimulateGaussianAR.R | 1 + R/TimeSeriesPlot.R | 8 ++++---- R/UnitRootTest.R |only R/getRho.R |only R/getT.R |only R/glog.R |only R/plot.FitAR.R | 9 ++++++--- data/Commodities.rda |only data/FXRates.rda |only data/SeriesB.rda |only data/SeriesB2.rda |only inst/doc |only man/BoxCox.Arima.Rd | 4 ++-- man/Commodities.Rd |only man/FXRates.Rd |only man/FitAR-package.Rd | 8 ++------ man/GetLeapsAR.Rd | 23 ++++++++++------------- man/LBQPlot.Rd | 10 +++++++--- man/LjungBoxTest.Rd | 15 ++++++++++----- man/PlotARSdf.Rd | 10 +++++++--- man/Readts.Rd | 14 +++++++------- man/SelectModel.Rd | 14 +++++++++----- man/SeriesB.Rd |only man/SeriesB2.Rd |only man/SimulateGaussianAR.Rd | 5 ++--- man/TimeSeriesPlot.Rd | 4 +++- man/UnitRootTest.Rd |only man/getRho.Rd |only man/getT.Rd |only man/glog.Rd |only man/sdfplot.Arima.Rd | 3 ++- man/sdfplot.FitAR.Rd | 3 ++- man/sdfplot.Rd | 3 ++- man/sdfplot.ar.Rd | 3 ++- man/sdfplot.numeric.Rd | 3 ++- man/sdfplot.ts.Rd | 3 ++- 43 files changed, 168 insertions(+), 109 deletions(-)
Author: Michael Fay
Diff between ssanv versions 1.0 dated 2006-02-14 and 1.0-1 dated 2009-10-13
Title: Sample Size Adjusted for Nonadherence or Variability of input
parameters
Description: A set of functions to calculate sample size for two-sample
difference in means tests. Does adjustments for either
nonadherence or variability that comes from using data to
estimate parameters.
ssanv-1.0-1/ssanv/CITATION |only
ssanv-1.0-1/ssanv/ChangeLog |only
ssanv-1.0-1/ssanv/DESCRIPTION | 29 +++++++++++++++-----------
ssanv-1.0-1/ssanv/R/ss.nonadh.R | 12 +++++-----
ssanv-1.0-1/ssanv/man/find.calibrated.beta.Rd | 4 +--
ssanv-1.0-1/ssanv/man/ss.fromdata.neff.Rd | 6 ++---
ssanv-1.0-1/ssanv/man/ss.fromdata.nvar.Rd | 9 +++-----
ssanv-1.0-1/ssanv/man/ss.fromdata.pois.Rd | 7 ++----
ssanv-1.0-1/ssanv/man/ss.nonadh.Rd | 6 ++---
ssanv-1.0-1/ssanv/man/ssanv.package.Rd | 12 ++++------
ssanv-1.0/ssanv/README |only
11 files changed, 43 insertions(+), 42 deletions(-)
Author: Michael Fay
Diff between rateratio.test versions 1.0 dated 2007-06-05 and 1.0-1 dated 2009-10-13
More information about rateratio.test at CRAN
Title: Exact rate ratio test
Description: A function which performs exact rate ratio tests and
returns an object of class htest.
Changelog |only
DESCRIPTION | 25 ++++++++++++++-----------
inst/doc/rateratio.test.Rnw | 2 +-
inst/doc/rateratio.test.pdf |binary
man/rateratio.Rd | 3 +--
5 files changed, 16 insertions(+), 14 deletions(-)
Permanent link
Author: Alexis Dinno
Diff between paran versions 1.4.1 dated 2008-10-15 and 1.4.2 dated 2009-10-13
Title: Horn's Test of Principal Components/Factors
Description: paran is an implementation of Horn's technique for
numerically and graphically evaluating the components or
factors retained in a principle components analysis (PCA) or
common factor analysis (FA). Horn's method contrasts
eigenvalues produced through a PCA or FA on a number of random
data sets of uncorrelated variables with the same number of
variables and observations as the experimental or observational
data set to produce eigenvalues for components or factors that
are adjusted for the sample error-induced inflation. Components
with adjusted eigenvalues greater than one are retained. paran
may also be used to conduct parallel analysis following
Glorfeld's (1995) suggestions to reduce the likelihood of
over-retention.
DESCRIPTION | 22 ++++++++++++++++++----
man/paran.Rd | 2 +-
2 files changed, 19 insertions(+), 5 deletions(-)
Author: P. Roebuck
Title: MATLAB emulation package
Description: Emulate MATLAB code using R
Diff between matlab versions 0.8-2 dated 2008-10-17 and 0.8-3 dated 2009-10-13
DESCRIPTION | 8 +++++--- NEWS | 6 ++++-- man/ceil.Rd | 4 +++- man/cell.Rd | 4 +++- man/colorbar.Rd | 36 ++++++++++++++++++++---------------- man/eye.Rd | 4 +++- man/fileparts.Rd | 6 ++++-- man/filesep.Rd | 4 +++- man/find.Rd | 4 +++- man/fix.Rd | 6 ++++-- man/fliplr.Rd | 8 +++++--- man/fullfile.Rd | 6 ++++-- man/imagesc.Rd | 14 ++++++++------ man/isempty.Rd | 4 +++- man/jet.colors.Rd | 6 ++++-- man/linspace.Rd | 6 ++++-- man/logspace.Rd | 6 ++++-- man/magic.Rd | 4 +++- man/matlab-package.Rd | 8 +++++--- man/meshgrid.Rd | 8 ++++---- man/mod.Rd | 4 +++- man/multiline.plot.colors.Rd | 8 +++++--- man/ndims.Rd | 4 +++- man/numel.Rd | 4 +++- man/ones.Rd | 4 +++- man/padarray.Rd | 6 ++++-- man/pascal.Rd | 6 ++++-- man/pathsep.Rd | 4 +++- man/repmat.Rd | 4 +++- man/reshape.Rd | 8 ++++---- man/rot90.Rd | 6 ++++-- man/size.Rd | 4 +++- man/size_t-class.Rd | 4 +++- man/std.Rd | 6 ++++-- man/strcmp.Rd | 4 +++- man/sum.Rd | 6 ++++-- man/tictoc.Rd | 8 +++++--- 37 files changed, 157 insertions(+), 85 deletions(-)
Author: M.P. Fay
Title: Choplump tests
Description: Choplump Tests are Permutation Tests for Comparing Two
Groups with Some Positive but Many Zero Responses
Diff between choplump versions 0.9-3 dated 2007-09-04 and 1.0 dated 2009-10-13
CHANGELOG |only CITATION |only DESCRIPTION | 25 ++++++++++++++----------- R/chop.R | 2 +- inst/doc/Rplots.pdf |only inst/doc/choplumpComputation.pdf |binary inst/doc/choplumpValidation.pdf |binary man/choplump-internal.Rd | 3 +-- man/choplump-package.Rd | 7 ++++--- man/choplump.Rd | 11 ++++++----- 10 files changed, 26 insertions(+), 22 deletions(-)
Author: Peter Wolf, Uni Bielefeld
Title: Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, and
some slider functions
Description: set of functions for drawing some special plots: stem.leaf
plots a stem and leaf plot bagplot plots a bagplot faces plots
chernoff faces spin3R for an inspection of a 3-dim point cloud
slider functions for interactive graphics
Diff between aplpack versions 1.2.1 dated 2009-06-16 and 1.2.2 dated 2009-10-13
DESCRIPTION | 8 ++++---- inst/doc/sliderbootwidget.jpg |binary inst/doc/sliderfns.Snw | 40 ++++++++++++++++++++-------------------- inst/doc/sliderfns.pdf |binary inst/src/bagplot.rev | 3 +++ inst/src/ms.rev | 2 +- inst/src/sliderfns.rev | 30 +++++++++++++++--------------- man/slider.bootstrap.lm.plot.Rd | 2 +- man/slider.brush.Rd | 9 ++++----- man/slider.hist.Rd | 2 +- man/slider.lowess.plot.Rd | 2 +- man/slider.smooth.plot.ts.Rd | 2 +- man/slider.split.plot.ts.Rd | 5 +++-- man/slider.zoom.plot.ts.Rd | 2 +- man/stem.leaf.Rd | 2 +- 15 files changed, 56 insertions(+), 53 deletions(-)
Author: M.P. Fay
Title: Monte Carlo hypothesis tests with Sequential Stopping
Description: The package performs Monte Carlo hypothesis tests. It
allows a couple of different sequential stopping boundaries (a
truncated sequential probability ratio test boundary and a
boundary proposed by Besag and Clifford, 1991). Gives valid
p-values and confidence intervals on p-values.
Diff between MChtest versions 1.0 dated 2007-03-25 and 1.0-1 dated 2009-10-13
CITATION |only ChangeLog | 8 ++++++++ DESCRIPTION | 31 +++++++++++++++++++------------ R/findB.design.R | 5 +++-- inst |only man/MCbound.Rd | 4 +++- man/MCbound.precalc1.Rd | 2 ++ man/MChtest-package.Rd | 8 ++++---- man/MCtest.Rd | 3 ++- man/p1.given.p0.Rd | 4 +++- man/plot.MCbound.Rd | 2 +- man/print.MCtest.Rd | 2 +- man/rrisk.Rd | 4 +++- 13 files changed, 49 insertions(+), 24 deletions(-)
Author: Richard Bourgon
Diff between intervals versions 0.13.0 dated 2009-07-18 and 0.13.1 dated 2009-10-13
Title: Tools for working with points and intervals
Description: Tools for working with and comparing sets of points and
intervals.
DESCRIPTION | 10 +++++-----
man/Intervals_virtual_or_numeric-class.Rd | 2 +-
2 files changed, 6 insertions(+), 6 deletions(-)
Author: John Fox, Michael Friendly, and Georges Monette
Title: Visualizing Tests in Multivariate Linear Models
Description: Represents sums-of-squares-and-products matrices for
linear hypotheses and for error using ellipses (in two
dimensions) and ellipsoids (in three dimensions).
Diff between heplots versions 0.8-9 dated 2009-07-23 and 0.8-10 dated 2009-10-13
DESCRIPTION | 10 +++++----- inst/CHANGES | 5 ++--- man/cross3d.Rd | 2 +- man/ellipse3d.axes.Rd | 2 +- man/heplot-package.Rd | 4 ++-- man/heplot1d.Rd | 4 +--- 6 files changed, 12 insertions(+), 15 deletions(-)
Author: Antonio Gasparrini and Ben Armstrong
Title: Distributed Lag Non-linear Models
Description: The package dlnm contains functions to specify basis and
cross-basis matrices in order to run distributed lag models and
their non-linear extension, then to predict and graph the
results for a fitted model.
Diff between dlnm versions 1.0.1 dated 2009-09-18 and 1.0.2 dated 2009-10-13
DESCRIPTION | 12 inst/ChangeLog | 11 inst/doc/Rplots.pdf | 4 inst/doc/dlnmOverview.pdf | 962 ++++++++++++++++++++++------------------------ man/crossbasis.Rd | 4 man/crossplot.Rd | 4 man/dlnm-package.Rd | 2 7 files changed, 503 insertions(+), 496 deletions(-)
Author: Frank Schaarschmidt
Title: Asymptotic simultaneous confidence intervals for many-to-one
comparisons of proportions
Description: Asymptotic simultaneous confidence intervals for
comparison of many treatments with one control, for the
difference of binomial proportions, allows for
Dunnett-like-adjustment, Bonferroni or unadjusted intervals.
Simulation of power of the above interval methods, approximate
calculation of any-pair-power, and sample size iteration based
on approximate any-pair power. Exact conditional maximum test
for many-to-one comparisons to a control.
Diff between binMto versions 0.0-3 dated 2007-08-25 and 0.0-4 dated 2009-10-13
DESCRIPTION | 36 +++++++++++++++++++++--------------- man/Mtoquant.Rd | 7 ++++++- man/apprPower.rd | 2 +- man/binMto.Rd | 28 ++++++++++------------------ man/binMto.package.Rd | 7 ++----- man/binMtoMethods.Rd | 11 +++++++---- man/ec.mto.Rd | 11 ++++------- man/nbinMto.Rd | 2 +- man/plot.binMto.Rd | 2 +- man/print.binMto.Rd | 2 +- 10 files changed, 54 insertions(+), 54 deletions(-)
Author: Jose L. Izquierdo
Diff between Metabonomic versions 3.3 dated 2009-09-18 and 3.3.1 dated 2009-10-13
Title: GUI for Metabonomic Analysis
Description: Graphical User Interface for the Metabonomic Analysis
(Baseline, Normalization, Peak Detection, PCA, PLS, Nearest
Neigbourgt, Neural Network) developed to make easy this data
analysis.
DESCRIPTION | 8 ++++----
R/Import.data.R | 43 +++++++++++++++++++++++++++++++++++++------
R/Met.Selection.R | 3 ++-
3 files changed, 43 insertions(+), 11 deletions(-)
Author: Frank Schaarschmidt, Daniel Gerhard, Martin Sill
Title: Multiple comparisons using normal approximation
Description: Multiple contrast tests and simultaneous confidence
intervals based on normal approximation. With implementations
for binomial proportions in a 2xk setting (risk difference and
odds ratio), poly-3-adjusted tumour rates, and multiple
comparisons of biodiversity indices. Approximative power
calculation for multiple contrast tests of binomial
proportions.
Diff between MCPAN versions 1.1-7 dated 2008-10-23 and 1.1-9 dated 2009-10-13
DESCRIPTION | 35 +++++++++++++++++++---------------- R/plotCI.R | 14 +++++++++++--- man/HCD.Rd | 18 +++++++++--------- man/MCPAN-package.Rd | 31 ++++++++++++------------------- man/Shannonci.Rd | 10 +++++----- man/Simpsonci.Rd | 10 +++++----- man/binomORci.Rd | 36 ++++++++++++++++++------------------ man/binomRDci.Rd | 22 +++++++++++----------- man/binomRDtest.Rd | 14 +++++++------- man/binomRRci.Rd | 25 +++++++++++-------------- man/binomest.Rd | 17 ++++++++--------- man/bronch.Rd | 6 +++--- man/censsample.Rd | 4 ++-- man/censsamplef.Rd | 4 ++-- man/estShannon.Rd | 6 +++--- man/estShannonf.Rd | 4 ++-- man/estSimpsonf.Rd | 8 ++++---- man/liarozole.Rd | 6 +++--- man/methyl.Rd | 10 +++++----- man/mosaicplot.Shannonci.Rd | 10 +++++----- man/plot.sci.Rd | 6 +++--- man/plotCI.Rd | 8 ++++---- man/plotCII.Rd | 11 ++++++----- man/poly3ci.Rd | 8 ++++---- man/poly3est.Rd | 2 +- man/poly3estf.Rd | 10 +++++----- man/poly3table.Rd | 2 +- man/poly3test.Rd | 8 ++++---- man/powerbinom.Rd | 14 +++++++------- man/powermcp.Rd | 2 +- man/print.Shannonci.Rd | 4 ++-- man/print.Simpsonci.Rd | 4 ++-- man/print.poly3est.Rd | 2 +- man/scalechoice.Rd | 2 +- man/summary.binomORci.Rd | 2 +- man/summary.binomRDci.Rd | 4 ++-- man/summary.binomRDtest.Rd | 4 ++-- 37 files changed, 192 insertions(+), 191 deletions(-)
Author: David Meyer, Achim Zeileis, Kurt Hornik
Title: Visualizing Categorical Data
Description: Visualization techniques, data sets, summary and inference
procedures aimed particularly at categorical data. Special
emphasis is given to highly extensible grid graphics. The
package was inspired by the book "Visualizing Categorical Data"
by Michael Friendly.
Diff between vcd versions 1.2-4 dated 2009-05-09 and 1.2-6 dated 2009-10-13
vcd-1.2-4/vcd/inst/doc/Z.cls |only vcd-1.2-4/vcd/inst/doc/jss.bst |only vcd-1.2-6/vcd/DESCRIPTION | 8 vcd-1.2-6/vcd/NAMESPACE | 1 vcd-1.2-6/vcd/NEWS | 40 + vcd-1.2-6/vcd/R/goodfit.R | 20 vcd-1.2-6/vcd/R/shadings.R | 41 - vcd-1.2-6/vcd/R/sieve.R | 34 + vcd-1.2-6/vcd/R/structable.R | 2 vcd-1.2-6/vcd/data/Bundesliga.rda |binary vcd-1.2-6/vcd/inst/NEWS | 40 + vcd-1.2-6/vcd/inst/doc/residual-shadings.pdf | 270 +++++------ vcd-1.2-6/vcd/inst/doc/strucplot.Rnw | 600 +++++++++++++------------- vcd-1.2-6/vcd/inst/doc/strucplot.pdf |binary vcd-1.2-6/vcd/man/Baseball.Rd | 4 vcd-1.2-6/vcd/man/Bundesliga.Rd | 32 - vcd-1.2-6/vcd/man/Hospital.Rd | 2 vcd-1.2-6/vcd/man/Kappa.Rd | 2 vcd-1.2-6/vcd/man/agreementplot.Rd | 2 vcd-1.2-6/vcd/man/co_table.Rd | 2 vcd-1.2-6/vcd/man/fourfold.Rd | 2 vcd-1.2-6/vcd/man/goodfit.Rd | 17 vcd-1.2-6/vcd/man/grid_barplot.Rd | 2 vcd-1.2-6/vcd/man/labeling_border.Rd | 6 vcd-1.2-6/vcd/man/mosaic.Rd | 4 vcd-1.2-6/vcd/man/panel_pairs_diagonal.Rd | 4 vcd-1.2-6/vcd/man/panel_pairs_off-diagonal.Rd | 2 vcd-1.2-6/vcd/man/shadings.Rd | 2 vcd-1.2-6/vcd/man/sieve.Rd | 12 vcd-1.2-6/vcd/man/spine.Rd | 2 vcd-1.2-6/vcd/man/struc_mosaic.Rd | 4 vcd-1.2-6/vcd/man/struc_sieve.Rd | 5 vcd-1.2-6/vcd/man/structable.Rd | 4 vcd-1.2-6/vcd/man/tile.Rd | 2 34 files changed, 628 insertions(+), 540 deletions(-)
Author: David Meyer and Christian Buchta
Title: Distance and Similarity Measures
Description: Provides an extensible framework for the effcient
calculation of auto- and cross-proximities, along with
implementations of the most popular ones.
Diff between proxy versions 0.4-3 dated 2009-05-24 and 0.4-4 dated 2009-10-13
DESCRIPTION | 8 ++--- NEWS | 9 +++++ R/dissimilarities.R | 81 ++++++++++++++++++++++++++++++++++++++++++++++++++-- R/similarities.R | 31 ++++++++++++++++++- inst/NEWS | 9 +++++ inst/doc |only src/distance.c | 33 +++++++++++---------- 7 files changed, 148 insertions(+), 23 deletions(-)
Author: Roger Bivand
Diff between spdep versions 0.4-47 dated 2009-10-12 and 0.4-49 dated 2009-10-13
Title: Spatial dependence: weighting schemes, statistics and models
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by
distance and tesselations, for summarising these objects, and
for permitting their use in spatial data analysis, including
regional aggregation by minimum spanning tree; a collection of
tests for spatial autocorrelation, including global Moran's I,
APLE, Geary's C, Hubert/Mantel general cross product statistic,
Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G
and multicoloured join count statistics, local Moran's I and
Getis/Ord G, saddlepoint approximations and exact tests for
global and local Moran's I; and functions for estimating
spatial simultaneous autoregressive (SAR) lag and error models,
impact measures for lag models, weighted and unweighted SAR and
CAR spatial regression models, semi-parametric and Moran
eigenvector spatial filtering, GM SAR error models, and
generalized spatial two stage least squares models.
ChangeLog | 24 +++++
DESCRIPTION | 6 -
inst/ChangeLog | 24 +++++
inst/doc/CO69.Rnw | 24 ++++-
inst/doc/CO69.pdf |binary
inst/doc/backstore |only
inst/doc/sids.pdf | 234 ++++++++++++++++++++++++-------------------------
man/ME.Rd | 2
man/aple.mc.Rd | 2
man/aple.plot.Rd | 2
man/impacts.sarlm.Rd | 2
man/joincount.multi.Rd | 4
man/spautolm.Rd | 5 -
13 files changed, 205 insertions(+), 124 deletions(-)
Author: Adrian Baddeley
Diff between spatstat versions 1.16-2 dated 2009-08-23 and 1.16-3 dated 2009-10-13
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Contains
functions for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, and pixel images. Point
process models can be fitted to point pattern data. Cluster
type models are fitted by the method of minimum contrast. Very
general Gibbs point process models can be fitted to point
pattern data using a function ppm similar to lm or glm. Models
may include dependence on covariates, interpoint interaction
and dependence on marks. Fitted models can be simulated
automatically. Also provides facilities for formal inference
(such as chi-squared tests) and model diagnostics (including
simulation envelopes, residuals, residual plots and Q-Q plots).
DESCRIPTION | 8
INDEX | 2
R/Kinhom.S | 52 +--
R/connected.R | 6
R/deltametric.R |only
R/distfun.R |only
R/ho.R | 3
R/images.R | 4
R/kppm.R | 31 +
R/mpl.R | 68 +++-
R/nncross.R | 4
R/pairsat.family.S | 61 +--
R/pairwise.family.S | 71 ++--
R/plot.ppp.S | 16 -
R/ppm.R | 4
R/ppmclass.R | 14
R/ppp.S | 17 -
R/quadratcount.R | 63 ++-
R/quadrattest.R | 2
R/rmhcontrol.R | 6
R/suffstat.R | 119 +++----
R/summary.ppm.R | 25 +
R/tess.R | 4
R/unique.ppp.R | 4
R/util.S | 37 ++
R/wingeom.S | 6
inst/doc/shapefiles.pdf | 758 +++++++++++++++++++++++-------------------------
man/Kinhom.Rd | 20 +
man/area.owin.Rd | 4
man/colourmap.Rd | 2
man/deltametric.Rd |only
man/distfun.Rd |only
man/distmap.Rd | 7
man/finpines.Rd | 5
man/internal.Rd | 12
man/markcorr.Rd | 2
man/nbfires.Rd | 4
man/perimeter.Rd | 3
man/plot.fv.Rd | 4
man/ppm.Rd | 47 +-
man/quadrats.Rd | 15
man/rmhmodel.default.Rd | 2
man/simulate.kppm.Rd | 15
man/spatstat-package.Rd | 5
man/suffstat.Rd | 35 ++
man/swedishpines.Rd | 2
src/corrections.c | 18 -
47 files changed, 889 insertions(+), 698 deletions(-)
Author: Adrian Baddeley
Diff between scuba versions 1.2-2 dated 2008-11-02 and 1.2-3 dated 2009-10-13
Title: Scuba diving calculations and decompression models
Description: dive profiles, decompression models and gas calculations
for scuba diving
DESCRIPTION | 15
inst/doc/intro.Rnw | 10
inst/doc/intro.pdf | 2661 ++++++++++++++++++++++++++++-------------------------
man/dive.Rd | 2
man/nitrox.Rd | 2
5 files changed, 1455 insertions(+), 1235 deletions(-)
Author: Daniela M. Witten and Robert Tibshirani
Diff between scout versions 1.0 dated 2008-12-09 and 1.0.1 dated 2009-10-13
Title: Implements the Scout method for Covariance-Regularized
Regression
Description: Implements the Scout method for regression, described in
"Covariance-regularized regression and classification for
high-dimensional problems", by Witten and Tibshirani (2008),
Journal of the Royal Statistical Society, Series B 71(3):
615-636.
DESCRIPTION | 17 ++++++++++++-----
man/crossProdLasso.Rd | 40 ++++++++++++++++++++--------------------
man/cv.scout.Rd | 4 ++--
man/predict.scoutobject.Rd | 4 ++--
man/scout-package.Rd | 8 ++++----
man/scout.Rd | 10 +++++-----
6 files changed, 45 insertions(+), 38 deletions(-)
Author: John Verzani with contributions by Yvonnick Noel
Title: Poor Man's GUI
Description: Simple GUI for R using gWidgets.
Diff between pmg versions 0.9-38 dated 2008-05-02 and 0.9-40 dated 2009-10-13
ChangeLog |only DESCRIPTION | 14 ++++++++------ DESCRIPTION.gWidgetsRGtk |only NEWS | 7 ++++++- TODO.txt |only changes.txt |only inst/doc/pmg.pdf |binary man/pmg.Rd | 2 +- quincunx.R |only readme |only 10 files changed, 15 insertions(+), 8 deletions(-)
Author: Chris Fraley and Adrian Raftery
Title: Model-Based Clustering / Normal Mixture Modeling
Description: Model-based clustering and normal mixture modeling
including Bayesian regularization
Diff between mclust versions 3.3.1 dated 2009-07-01 and 3.3.2 dated 2009-10-13
mclust-3.3.1/mclust/core |only mclust-3.3.2/mclust/CHANGELOG | 1 + mclust-3.3.2/mclust/DESCRIPTION | 8 ++++---- mclust-3.3.2/mclust/man/mclustOptions.Rd | 18 +++++++++--------- 4 files changed, 14 insertions(+), 13 deletions(-)
Author: Rob J Hyndman
Diff between hdrcde versions 2.11 dated 2009-09-18 and 2.12 dated 2009-10-13
Title: Highest density regions and conditional density estimation
Description: Computation of highest density regions in one and two
dimensions, kernel estimation of univariate density functions
conditional on one covariate, and multimodal regression.
ChangeLog | 4 ++++
DESCRIPTION | 8 ++++----
INDEX | 1 +
NAMESPACE | 2 +-
R/hdr.R | 4 ++--
R/hdr.boxplot.R | 49 ++++++++++++++++++++++++++++++++++++++++++++-----
R/hdr.den.R | 4 ++--
man/BoxCox.Rd |only
man/hdr.Rd | 43 +++++++++++++++++++++++++++++++++----------
9 files changed, 91 insertions(+), 24 deletions(-)
Author: Paul Gilbert
Diff between dse versions 2009.7-1 dated 2009-07-26 and 2009.10-1 dated 2009-10-13
Title: Dynamic Systems Estimation (time series package)
Description: Multivariate Time Series - ARMA and State Space models.
See ?dse.Intro for more details.
dse-2009.10-1/dse/DESCRIPTION | 24 ++++++++++--------------
dse-2009.10-1/dse/LICENSE |only
dse-2009.10-1/dse/NAMESPACE |only
dse-2009.10-1/dse/NEWS | 11 +++++++++++
dse-2009.10-1/dse/R |only
dse-2009.10-1/dse/data |only
dse-2009.10-1/dse/demo |only
dse-2009.10-1/dse/exec |only
dse-2009.10-1/dse/inst |only
dse-2009.10-1/dse/man |only
dse-2009.10-1/dse/src |only
dse-2009.10-1/dse/tests |only
dse-2009.7-1/dse/dse1 |only
dse-2009.7-1/dse/dse2 |only
14 files changed, 21 insertions(+), 14 deletions(-)
Author: Andy Bunn
Title: Dendrochronology Program Library in R
Description: This package contains functions for performing some
standard tree-ring analyses.
Diff between dplR versions 1.1.9.3 dated 2009-10-07 and 1.1.9.4 dated 2009-10-13
DESCRIPTION | 8 ++++---- NAMESPACE | 3 ++- R/crn.plot.R | 26 +++++++++++++++++--------- R/detrend.R | 3 ++- R/detrend.series.R | 17 ++++++++++------- R/ffcsaps.R |only R/i.detrend.R | 5 +++-- R/i.detrend.series.R | 5 +++-- man/corr.rwl.seg.Rd | 2 +- man/corr.series.seg.Rd | 2 +- man/crn.plot.Rd | 12 +++++++++--- man/detrend.Rd | 10 +++++++++- man/detrend.series.Rd | 23 +++++++++++++++++------ man/ffcsaps.Rd |only man/hanning.Rd | 2 +- man/i.detrend.Rd | 8 +++++++- man/i.detrend.series.Rd | 8 +++++++- man/series.rwl.plot.Rd | 2 +- 18 files changed, 94 insertions(+), 42 deletions(-)
Author: Yu-Sung Su
Diff between R2jags versions 0.01-24 dated 2009-08-06 and 0.01-26 dated 2009-10-13
Title: A Package for Running jags from R
Description: Using this package to call jags from R.
CHANGELOG | 9 +++++++++
DESCRIPTION | 8 ++++----
NAMESPACE | 2 ++
R/attach.jags.R |only
R/jags.R | 5 ++---
R/jags2.R | 2 +-
man/attach.jags.Rd |only
man/jags.Rd | 19 ++++++++++++++-----
8 files changed, 32 insertions(+), 13 deletions(-)
Author: Alexis Dinno
Diff between LoopAnalyst versions 1.2-1.1 dated 2009-02-23 and 1.2-2 dated 2009-10-13
Title: A collection of tools to conduct Levins' Loop Analysis
Description: Loop analysis makes qualitative predictions of variable
change in a system of causally interdependent variabless, where
"qualitative" means sign only (i.e. increases, decreases, non
change, and ambiguous). This implementation includes output
support for graphs in .dot file format for use with
visualization software such as graphviz (graphviz.org). Loop
Analyst provides tools for the construction and output of
community matrices, computation and output of community effect
matrices, tables of correlations, adjoint, absolute feedback,
weighted feedback and weighted prediction matrices, change in
life expectancy matrices, and feedback, path and loop
enumeration tools.
DESCRIPTION | 27 ++++++++++++++++++++-------
R/graph.cem.R | 4 ++--
2 files changed, 22 insertions(+), 9 deletions(-)
Author: A.I. McLeod
Title: Kendall rank correlation and Mann-Kendall trend test
Description: Computes the Kendall rank correlation
Diff between Kendall versions 2.0 dated 2006-02-08 and 2.1 dated 2009-10-13
Kendall-2.0/Kendall/INDEX |only Kendall-2.0/Kendall/README |only Kendall-2.1/Kendall/DESCRIPTION | 24 +++++++------ Kendall-2.1/Kendall/R/Kendall.R | 4 +- Kendall-2.1/Kendall/man/Kendall-package.Rd |only Kendall-2.1/Kendall/man/Kendall.Rd | 46 +++++++++++++++++++------ Kendall-2.1/Kendall/man/SeasonalMannKendall.Rd | 23 +++++------- Kendall-2.1/Kendall/man/print.Kendall.Rd | 4 +- Kendall-2.1/Kendall/man/summary.Kendall.Rd | 4 +- Kendall-2.1/Kendall/src/Kendall.f | 1 10 files changed, 69 insertions(+), 37 deletions(-)
Author: A.I. McLeod
Title: Fractional Gaussian Noise Model Fitting
Description: MLE for H parameter in FGN; MLE for regression with FGN
error; simulation of FGN
Diff between FGN versions 1.1 dated 2008-01-08 and 1.2 dated 2009-10-13
FGN-1.1/FGN/INDEX |only FGN-1.2/FGN/DESCRIPTION | 25 ++-- FGN-1.2/FGN/man/Boot.FitFGN.Rd | 116 ++++++++++----------- FGN-1.2/FGN/man/Boot.Rd | 72 ++++++------- FGN-1.2/FGN/man/FGN-package.Rd |only FGN-1.2/FGN/man/FGNAcf.Rd | 78 +++++++------- FGN-1.2/FGN/man/FGNLL.Rd | 102 +++++++++---------- FGN-1.2/FGN/man/FitFGN.Rd | 142 +++++++++++++------------- FGN-1.2/FGN/man/FitRegressionFGN.Rd | 118 +++++++++++----------- FGN-1.2/FGN/man/GetFitFGN.Rd | 190 ++++++++++++++++++------------------ FGN-1.2/FGN/man/HurstK.Rd | 92 ++++++++--------- FGN-1.2/FGN/man/NileFlowCMS.Rd | 64 ++++++------ FGN-1.2/FGN/man/NileMin.Rd | 188 +++++++++++++++++------------------ FGN-1.2/FGN/man/SimulateFGN.Rd | 114 ++++++++++----------- FGN-1.2/FGN/man/coef.FitFGN.Rd | 72 ++++++------- FGN-1.2/FGN/man/plot.FitFGN.Rd | 102 +++++++++---------- FGN-1.2/FGN/man/predict.FitFGN.Rd | 88 ++++++++-------- FGN-1.2/FGN/man/print.FitFGN.Rd | 80 +++++++-------- FGN-1.2/FGN/man/residuals.FitFGN.Rd | 54 +++++----- FGN-1.2/FGN/man/summary.FitFGN.Rd | 58 +++++----- 20 files changed, 879 insertions(+), 876 deletions(-)
Author: Original by Jay L. Devore, modifications by Douglas Bates
Diff between Devore7 versions 0.7.1 dated 2007-03-08 and 0.7.2 dated 2009-10-13
Title: Data sets from Devore's "Prob and Stat for Eng (7th ed)"
Description: Data sets and sample analyses from Jay L. Devore (2008),
"Probability and Statistics for Engineering and the Sciences
(7th ed)", Thomson.
DESCRIPTION | 13
inst/doc/Devore7.pdf |13629 +++++++++++++++++++++++++++++----------------------
man/xmp15.09.Rd | 2
3 files changed, 7916 insertions(+), 5728 deletions(-)