Author: David Meyer, Achim Zeileis, Kurt Hornik
Title: Visualizing Categorical Data
Description: Visualization techniques, data sets, summary and inference
procedures aimed particularly at categorical data. Special
emphasis is given to highly extensible grid graphics. The
package was inspired by the book "Visualizing Categorical Data"
by Michael Friendly.
Diff between vcd versions 1.2-6 dated 2009-10-13 and 1.2-7 dated 2009-10-18
DESCRIPTION | 8 ++++---- NEWS | 18 +++++++++++++++--- R/goodfit.R | 29 +++++++++++++++++------------ inst/NEWS | 18 +++++++++++++++--- inst/doc/residual-shadings.pdf | 26 +++++++++++++------------- inst/doc/strucplot.pdf |binary 6 files changed, 64 insertions(+), 35 deletions(-)
Author: Paul Gilbert and Erik Meijer
Diff between tsfa versions 2009.02-1 dated 2009-02-10 and 2009.10-1 dated 2009-10-18
Title: Time Series Factor Analysis
Description: Extraction of Factors from Multivariate Time Series. See
?00tsfa-Intro for more details.
tsfa-2009.02-1/tsfa/Rplots.pdf |only
tsfa-2009.10-1/tsfa/DESCRIPTION | 17 +++-
tsfa-2009.10-1/tsfa/NAMESPACE | 8 +-
tsfa-2009.10-1/tsfa/NEWS | 103 +++++++++++++++---------------
tsfa-2009.10-1/tsfa/inst/doc/tsfa.pdf |binary
tsfa-2009.10-1/tsfa/man/TSFmodel.Rd | 2
tsfa-2009.10-1/tsfa/man/checkResiduals.Rd | 4 -
tsfa-2009.10-1/tsfa/man/distribution.Rd | 6 -
tsfa-2009.10-1/tsfa/man/explained.Rd | 2
tsfa-2009.10-1/tsfa/man/simulate.Rd | 14 ++--
tsfa-2009.10-1/tsfa/man/summaryStats.Rd | 2
tsfa-2009.10-1/tsfa/man/tsfa-package.Rd | 5 -
tsfa-2009.10-1/tsfa/tests/MCestTSF_ML.R | 4 -
tsfa-2009.10-1/tsfa/tests/TruePar.R | 4 -
tsfa-2009.10-1/tsfa/tests/estTSF_ML.R | 4 -
tsfa-2009.10-1/tsfa/tests/estTSF_QML.R | 4 -
16 files changed, 93 insertions(+), 86 deletions(-)
Author: Paul Gilbert
Diff between tframePlus versions 2009.02-1 dated 2009-02-03 and 2009.10-1 dated 2009-10-18
Title: Time Frame coding kernel extensions
Description: Extensions and additional tframe utilities.
DESCRIPTION | 14
NAMESPACE | 9
NEWS | 55 +
R/utils.R | 98 +++
R/zoo.R | 20
Rplots.pdf | 1478 ++++++++++++++++++++++++------------------------
inst/doc/tframePlus.pdf |binary
man/TSwriteXLS.Rd |only
man/as.quarterly.Rd | 56 +
man/its.Rd | 12
man/rollAggregate.Rd |only
man/tfI.Rd | 2
man/tfpersp.Rd | 2
man/zoo.Rd | 13
test.xls |only
tests/TSwriteXLS.R |only
16 files changed, 976 insertions(+), 783 deletions(-)
Author: Paul Gilbert
Diff between tframe versions 2009.2-1 dated 2009-02-03 and 2009.10-1 dated 2009-10-18
Title: Time Frame coding kernel
Description: Functions for writing code that is independent of the way
time is represented. See ?tframe.Intro for more details.
DESCRIPTION | 15 ++++---
NEWS | 99 ++++++++++++++++++++++++----------------------------
R/tframe.R | 11 +++--
inst/doc/tframe.pdf |binary
man/seriesNames.Rd | 4 +-
man/tfL.Rd | 2 -
man/tfstart.Rd | 10 ++---
7 files changed, 70 insertions(+), 71 deletions(-)
Author: Robert Ferstl, Josef Hayden
Title: Zero-coupon Yield Curve Estimation
Description: Zero-coupon yield curves and spread curves are important
inputs for various financial models, e.g. pricing of
securities, risk management, monetary policy issues. Since
zero-coupon rates are rarely directly observable, they have to
be estimated from market data. The literature broadly
distinguishes between parametric and spline-based estimation
methods for the zero-coupon yield curve. Our package consists
of several widely-used approaches, i.e. the parametric Nelson
and Siegel (1987) method with the Svensson (1994) extension,
and the McCulloch (1975) cubic splines approach. Extensive
summary statistics and plots are provided to compare the
results of the different estimation methods.
Diff between termstrc versions 1.1 dated 2008-02-21 and 1.1.1 dated 2009-10-18
DESCRIPTION | 37 +- R/methods.R | 82 ++-- R/nelson.R | 26 - R/splines.R | 41 +- R/tools.R | 671 +++++++++++++++++++------------------- man/aabse.Rd | 2 man/bond_prices.Rd | 2 man/bond_yields.Rd | 6 man/corpbonds.Rd | 10 man/create_cashflows_matrix.Rd | 5 man/create_maturities_matrix.Rd | 8 man/duration.Rd | 2 man/eurobonds.Rd | 6 man/forwardrates.Rd | 6 man/fwr_ns.Rd | 1 man/fwr_sv.Rd | 3 man/gi.Rd | 2 man/govbonds.Rd | 6 man/impl_fwr.Rd | 1 man/loss_function.Rd | 6 man/maturity_range.Rd | 2 man/nelson_estim.Rd | 274 +++++++-------- man/nelson_siegel.Rd | 2 man/plot.cubicsplines.Rd | 33 - man/plot.df_curves.Rd | 29 - man/plot.error.Rd | 20 - man/plot.fwr_curves.Rd | 29 - man/plot.ir_curve.Rd | 21 - man/plot.nelson.Rd | 34 - man/plot.s_curves.Rd | 26 - man/plot.spot_curves.Rd | 29 - man/print.cubicsplines.Rd | 10 man/print.nelson.Rd | 9 man/print.summary.cubicsplines.Rd | 8 man/print.summary.nelson.Rd | 8 man/rm_bond.Rd | 2 man/rmse.Rd | 4 man/splines_estim.Rd | 73 +--- man/spotrates.Rd | 3 man/summary.cubicsplines.Rd | 10 man/summary.nelson.Rd | 11 man/svensson.Rd | 2 42 files changed, 793 insertions(+), 769 deletions(-)
Author: William Constantine, Tim Hesterberg, Knut Wittkowski, Tingting
Song
Title: S-PLUS functionality missing from R
Description: Currently there are many functions in S-PLUS that are
missing in R. To facilitate the conversion of S-PLUS packages
to R packages, this package provides some missing S-PLUS
functionality in R.
Diff between splus2R versions 1.0-5 dated 2008-07-28 and 1.0-6 dated 2009-10-18
splus2R-1.0-5/splus2R/R/Swrappers.R |only splus2R-1.0-6/splus2R/DESCRIPTION | 24 +++++++++++---------- splus2R-1.0-6/splus2R/R/aaaSwrappers.R |only splus2R-1.0-6/splus2R/R/doTest.R | 4 +++ splus2R-1.0-6/splus2R/R/showStructure.R | 36 +++++++++++++++++++------------- splus2R-1.0-6/splus2R/man/ifelse1.Rd | 4 +-- splus2R-1.0-6/splus2R/man/nDotArgs.Rd | 2 - 7 files changed, 42 insertions(+), 28 deletions(-)
Author: Delphine Charif and Jean R. Lobry and Anamaria Necsulea and
Leonor Palmeira and Simon Penel
Title: Biological Sequences Retrieval and Analysis
Description: Exploratory data analysis and data visualization for
biological sequence (DNA and protein) data. Include also
utilities for sequence data management under the ACNUC system.
Diff between seqinr versions 2.0-5 dated 2009-09-18 and 2.0-6 dated 2009-10-18
seqinr |only 1 file changed
Author: Kurt Hornik, with contributions from Walter Boehm
Title: Cluster ensembles
Description: CLUster Ensembles
Diff between clue versions 0.3-31 dated 2009-09-10 and 0.3-32 dated 2009-10-18
DESCRIPTION | 8 +++---- R/pclust.R | 1 inst/doc/clue.pdf |binary man/addtree.Rd | 7 +++--- man/cl_consensus.Rd | 34 +++++++++++++++++--------------- man/fit_ultrametric_target.Rd | 6 ++--- man/l1_fit_ultrametric.Rd | 11 +++++----- man/ls_fit_sum_of_ultrametrics.Rd | 4 +-- man/ls_fit_ultrametric.Rd | 40 +++++++++++++++++++------------------- man/solve_LSAP.Rd | 7 ++++-- man/sumt.Rd | 2 - 11 files changed, 65 insertions(+), 55 deletions(-)
Author: Kurt Hornik, with contributions from Christian Buchta, Torsten
Hothorn, Alexandros Karatzoglou, David Meyer, and Achim Zeileis
Title: R/Weka interface
Description: An R interface to Weka (Version 3.6.1). Weka is a
collection of machine learning algorithms for data mining tasks
written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Both the R interface and Weka itself are
contained in the RWeka package. For more information on Weka
see http://www.cs.waikato.ac.nz/~ml/weka/.
Diff between RWeka versions 0.3-21 dated 2009-08-31 and 0.3-22 dated 2009-10-18
CHANGELOG | 4 ++++ DESCRIPTION | 8 ++++---- R/associators.R | 4 ++-- R/classifiers.R | 12 ++++++------ R/clusterers.R | 4 ++-- R/control.R | 2 +- R/readers.R | 4 ++-- R/techinfo.R | 6 +++--- R/utils.R | 10 +++++++--- R/wow.R | 4 ++-- man/WOW.Rd | 8 ++++---- man/Weka_classifier_functions.Rd | 4 ++-- man/Weka_classifier_lazy.Rd | 2 +- man/Weka_classifier_meta.Rd | 2 +- man/Weka_classifier_rules.Rd | 2 +- man/Weka_classifier_trees.Rd | 6 +++--- man/Weka_classifiers.Rd | 10 +++++----- man/Weka_converters.Rd | 6 +++--- man/Weka_filters.Rd | 8 ++++---- man/Weka_interfaces.Rd | 2 +- man/dot.Rd | 2 +- man/read.arff.Rd | 12 +++++++----- man/write.arff.Rd | 3 ++- 23 files changed, 68 insertions(+), 57 deletions(-)
Author: Fortran original by Leo Breiman and Adele Cutler, R port by
Andy Liaw and Matthew Wiener.
Title: Breiman and Cutler's random forests for classification and
regression
Description: Classification and regression based on a forest of trees
using random inputs.
Diff between randomForest versions 4.5-32 dated 2009-10-16 and 4.5-33 dated 2009-10-18
DESCRIPTION | 6 +++--- inst/NEWS | 7 +++++++ src/classTree.c | 30 +++++++++++++++--------------- src/rf.c | 37 +++++++++++++++++++------------------ src/rfutils.c | 18 +++++++++--------- 5 files changed, 53 insertions(+), 45 deletions(-)
Author: Charles J. Geyer
Diff between potts versions 0.3-4 dated 2009-09-22 and 0.4 dated 2009-10-18
Title: Markov Chain Monte Carlo for Potts Models
Description: the title says it all
ChangeLog | 2
DESCRIPTION | 8 -
R/potts.R | 29 ++++-
man/potts.Rd | 18 ++-
src/init.c | 6 +
src/potts.c | 259 +++++++++++++++++++++++++++++++++----------------
src/potts.h | 8 +
tests/outfun.R |only
tests/outfun.Rout.save |only
9 files changed, 236 insertions(+), 94 deletions(-)
Author: Frederick Novomestky
Diff between orthopolynom versions 1.0-1 dated 2007-08-25 and 1.0-2 dated 2009-10-18
Title: Collection of functions for orthogonal and orthonormal
polynomials
Description: A collection of functions to construct sets of orthogonal
polynomials and their recurrence relations. Additional
functions are provided to calculate the derivative, integral,
value and roots of lists of polynomial objects.
DESCRIPTION | 29 ++++++++++++++++-------------
man/orthonormal.polynomials.Rd | 2 +-
2 files changed, 17 insertions(+), 14 deletions(-)
Author: Ryan T. Moore
Diff between muRL versions 0.1-2 dated 2009-08-20 and 0.1-3 dated 2009-10-18
Title: Mailmerge using R, LaTeX, and the Web
Description: Provides mailmerge methods for reading spreadsheets of
addresses and other relevant information to create standardized
but customizable letters. Provides a method for mapping US ZIP
codes, including those of letter recipients. Provides a method
for parsing and processing html code from online job postings
of the American Political Science Association.
CHANGELOG | 5 +++++
DESCRIPTION | 8 ++++----
R/apsahtml2csv.R | 2 +-
R/zip.plot.R | 2 +-
data/zips.tab | 2 +-
man/murl-package.Rd | 4 ++--
man/zips.Rd | 4 ++--
7 files changed, 16 insertions(+), 11 deletions(-)
Author: Patrick Brown
Title: Generalised Linear Mixed Models and Spatial Models with BUGS
Description: Write bugs model files for hierarchical and spatial
models, arranges unbalanced data in ragged arrays, and creates
starting values.
Diff between glmmBUGS versions 1.6 dated 2009-04-26 and 1.6.4 dated 2009-10-18
glmmBUGS-1.6.4/glmmBUGS/DESCRIPTION | 10 +- glmmBUGS-1.6.4/glmmBUGS/R/addSpatial.R | 16 +-- glmmBUGS-1.6.4/glmmBUGS/R/checkChain.R | 2 glmmBUGS-1.6.4/glmmBUGS/R/getDesignMatrix.R | 5 - glmmBUGS-1.6.4/glmmBUGS/R/getStartingValues.R | 47 +++++++--- glmmBUGS-1.6.4/glmmBUGS/R/glmmBUGS.R | 100 ++++++++-------------- glmmBUGS-1.6.4/glmmBUGS/R/restoreParams.R | 34 +++++-- glmmBUGS-1.6.4/glmmBUGS/R/summaryChain.R | 2 glmmBUGS-1.6.4/glmmBUGS/R/winBugsRaggedArray.R | 71 +++++++++++---- glmmBUGS-1.6.4/glmmBUGS/R/writeBugsModel.R | 100 ++++++++++++++++------ glmmBUGS-1.6.4/glmmBUGS/data/ontario.RData |binary glmmBUGS-1.6.4/glmmBUGS/data/ontarioResult.RData |binary glmmBUGS-1.6.4/glmmBUGS/data/popDataAdjMat.RData |binary glmmBUGS-1.6.4/glmmBUGS/man/addSpatial.Rd | 3 glmmBUGS-1.6.4/glmmBUGS/man/getStartingValues.Rd | 6 - glmmBUGS-1.6.4/glmmBUGS/man/glmmBUGS.Rd | 7 + glmmBUGS-1.6.4/glmmBUGS/man/restoreParams.Rd | 10 +- glmmBUGS-1.6.4/glmmBUGS/man/winBugsRaggedArray.Rd | 9 + glmmBUGS-1.6.4/glmmBUGS/man/writeBugsModel.Rd | 68 +++++++++++--- glmmBUGS-1.6.4/glmmBUGS/tests |only glmmBUGS-1.6/glmmBUGS/Paper |only 21 files changed, 323 insertions(+), 167 deletions(-)
Author: Tim Coelli, Arne Henningsen
Title: Stochastic Frontier Analysis
Description: Maximum Likelihood Estimation of Stochastic Frontier
Production and Cost Functions. Two specifications are
available: the error components specification with time-varying
efficiencies (Battese and Coelli, 1992) and a model
specification in which the firm effects are directly influenced
by a number of variables (Battese and Coelli, 1995).
Diff between frontier versions 0.995-6 dated 2009-09-24 and 0.995-8 dated 2009-10-18
DESCRIPTION | 8 NEWS | 17 R/print.frontier.R | 26 R/print.summary.frontier.R | 1 R/summary.frontier.R | 5 data/front41Data.txt | 122 man/coef.summary.frontier.Rd | 6 man/front41Data.Rd | 1 man/front41Est.Rd | 3 man/front41ReadOutput.Rd | 4 man/front41WriteInput.Rd | 4 man/frontier.Rd | 12 man/summary.frontier.Rd | 4 tests/frontier41.R | 8 tests/frontier41.Rout.save | 12 tests/frontierTest.R | 69 tests/frontierTest.Rout.save |38809 +++++++++++++++++++++---------------------- tests/translogRay.Rout.save | 59 18 files changed, 19761 insertions(+), 19409 deletions(-)
Author: J. O. Ramsay
Diff between fda versions 2.1.2 dated 2009-06-02 and 2.1.3 dated 2009-10-18
Title: Functional Data Analysis
Description: These functions were developed to support functional data
analysis as described in Ramsay, J. O. and Silverman, B. W.
(2005) Functional Data Analysis. New York: Springer. They were
ported from earlier versions in Matlab and S-PLUS. An
introduction appears in Ramsay, J. O., Hooker, Giles, and
Graves, Spencer (2009) Functional Data Analysis with R and
Matlab (Springer). The package includes data sets and script
files working many examples including all but one of the 76
figures in this latter book.
fda-2.1.2/fda/R |only
fda-2.1.2/fda/data |only
fda-2.1.2/fda/demo |only
fda-2.1.2/fda/inst/originals |only
fda-2.1.2/fda/man |only
fda-2.1.3/fda/DESCRIPTION | 27
fda-2.1.3/fda/NEWS | 95
fda-2.1.3/fda/TODO | 1
fda-2.1.3/fda/add-links.rb | 18
fda-2.1.3/fda/inst/scripts/CSTR/CSTR_demo.R | 1831 ----------
fda-2.1.3/fda/inst/scripts/CSTR/CSTR_demoMatlab-R.ppt |binary
fda-2.1.3/fda/inst/scripts/CSTR/fda-in-matlab-and-r.pdf |binary
fda-2.1.3/fda/inst/scripts/CSTR/fit9Mat.csv | 191 -
fda-2.1.3/fda/inst/scripts/CSTR/r-matlab-convergence-comparison.csv | 107
fda-2.1.3/fda/inst/scripts/afda-ch02.R | 9
fda-2.1.3/fda/inst/scripts/afda-ch03.R | 152
fda-2.1.3/fda/inst/scripts/afda-ch06.R | 515 --
fda-2.1.3/fda/inst/scripts/afda-ch07.R | 8
fda-2.1.3/fda/inst/scripts/fda-ch01.R | 298 -
fda-2.1.3/fda/inst/scripts/fda-ch03.R | 127
fda-2.1.3/fda/inst/scripts/fda-ch08.R | 10
fda-2.1.3/fda/inst/scripts/fda-ch17.R | 30
fda-2.1.3/fda/inst/scripts/fda-script-progress.xls |binary
fda-2.1.3/fda/inst/scripts/fdarm-ch03.R | 196 -
fda-2.1.3/fda/inst/scripts/fdarm-ch04.R | 226 -
fda-2.1.3/fda/inst/scripts/fdarm-ch09.R | 4
fda-2.1.3/fda/inst/scripts/fdarm-ch10.R | 694 ---
fda-2.1.3/fda/inst/scripts/fdarm-ch11.R | 166
fda-2.1.3/fda/load.r | 2
29 files changed, 2 insertions(+), 4705 deletions(-)
Author: Paul Gilbert
Diff between dse versions 2009.10-1 dated 2009-10-13 and 2009.10-2 dated 2009-10-18
Title: Dynamic Systems Estimation (time series package)
Description: Multivariate Time Series - ARMA and State Space models.
See ?dse.Intro for more details.
DESCRIPTION | 8
NEWS | 535 ++++++++++++++++++++-------------------------
inst/doc/dse-guide.pdf |binary
man/TSdata.object.Rd | 15 -
man/checkBalance.Rd | 2
man/checkBalanceMittnik.Rd | 2
man/dse-package.Rd | 8
man/estSSfromVARX.Rd | 4
man/estVARXar.Rd | 6
man/estVARXls.Rd | 4
man/periods.TSdata.Rd | 9
man/simulate.Rd | 2
12 files changed, 267 insertions(+), 328 deletions(-)
Author: Søren Højsgaard
Diff between doBy versions 4.0.2 dated 2009-09-07 and 4.0.3 dated 2009-10-18
Title: Groupwise computations of summary statistics, general linear
contrasts and other utilities
Description: Facilities for groupwise computations of summary
statistics and other facilities for working with grouped data.
ChangeLog | 8 +
DESCRIPTION | 6
R/esticon.R | 2
inst/doc/doBy.pdf | 415 ++++++++++++++++++++++++++----------------------------
man/esticon.Rd | 2
5 files changed, 220 insertions(+), 213 deletions(-)
Author: Tomoaki Nakatani
Diff between ccgarch versions 0.1.7 dated 2009-10-12 and 0.1.9 dated 2009-10-18
Title: Conditional Correlation GARCH models
Description: Functions for estimating and simulating the family of the
CC-GARCH models.
ChangeLog | 6 +++++
DESCRIPTION | 8 +++----
R/dlc.R | 63 +++++++++++++++++++++++++++++++++++++-----------------------
3 files changed, 49 insertions(+), 28 deletions(-)
Author: Ulrike Groemping
Title: R Commander Plugin for (industrial) Design of Experiments
Description: WARNING: This package is currently in beta status! The
package provides a platform-independent GUI for design of
experiments. It is implemented as a plugin to the R-Commander,
which is a more general graphical user interface for statistics
in R based on tcl/tk. DoE functionality can be accessed through
the menu Design that is added to the R-Commander menus.
Diff between RcmdrPlugin.DoE versions 0.5-5 dated 2009-10-08 and 0.5-6 dated 2009-10-18
DESCRIPTION | 8 ++++---- R/Menu.FrF2level.R | 46 ++++++++++++++++++++++++++++++++++++++++------ R/Menu.pb2level.R | 28 ++++++++++++++++++++++++---- inst/NEWS | 5 +++++ 4 files changed, 73 insertions(+), 14 deletions(-)
More information about RcmdrPlugin.DoE at CRAN
Permanent link
Author: Henrik Bengtsson
Diff between R.utils versions 1.2.0 dated 2009-09-10 and 1.2.2 dated 2009-10-18
Title: Various programming utilities
Description: This package provides utility classes and methods useful
when programming in R and developing R packages.
R.utils-1.2.0/R.utils/man/Sys.setenv.Rd |only
R.utils-1.2.2/R.utils/DESCRIPTION | 10 ++++++----
R.utils-1.2.2/R.utils/R/beta |only
R.utils-1.2.2/R.utils/R/copyDirectory.R | 4 ++--
R.utils-1.2.2/R.utils/R/createLink.R |only
R.utils-1.2.2/R.utils/R/createWindowsShortcut.R |only
R.utils-1.2.2/R.utils/R/devel |only
R.utils-1.2.2/R.utils/R/isOpen.character.R | 2 +-
R.utils-1.2.2/R.utils/R/readWindowsShortcut.R | 10 ++++++++--
R.utils-1.2.2/R.utils/incl/createWindowsShortcut.Rex |only
R.utils-1.2.2/R.utils/inst/NEWS | 10 ++++++++++
R.utils-1.2.2/R.utils/man/GString.Rd | 2 +-
R.utils-1.2.2/R.utils/man/copyDirectory.Rd | 4 ++--
R.utils-1.2.2/R.utils/man/createLink.Rd |only
R.utils-1.2.2/R.utils/man/createWindowsShortcut.Rd |only
R.utils-1.2.2/R.utils/man/isOpen.character.Rd | 4 ++--
R.utils-1.2.2/R.utils/man/readWindowsShortcut.Rd | 9 +++++++--
17 files changed, 39 insertions(+), 16 deletions(-)
Author: Henrik Bengtsson
Diff between R.huge versions 0.1.9 dated 2009-09-23 and 0.2.0 dated 2009-10-18
Title: Methods for accessing huge amounts of data [DEPRECATED]
Description: THIS PACKAGE HAS BEEN DEPRECATED. Do not start building
new projects based on it. Cross-platform alternatives are the
following packages: bigmemory (CRAN), ff (CRAN), BufferedMatrix
(BioConductor). The main usage of it was inside the
aroma.affymetrix package. (The package currently provides a
class representing a matrix where the actual data is stored in
a binary format on the local file system. This way the size
limit of the data is set by the file system and not the
memory.)
DESCRIPTION | 10 ++++++----
R/AbstractFileArray.R | 2 +-
R/FileMatrix.R | 2 +-
inst/NEWS | 4 ++++
man/R.huge-package.Rd | 2 +-
man/as.matrix.FileMatrix.Rd | 4 ++--
man/as.vector.AbstractFileArray.Rd | 4 ++--
7 files changed, 17 insertions(+), 11 deletions(-)
Author: Fadoua Balabdaoui, Kaspar Rufibach, Filippo Santambrogio
Title: Compute least squares estimates of one bounded or two ordered
isotonic regression curves
Description: We consider the problem of estimating two isotonic
regression curves g1* and g2* under the constraint that they
are ordered, i.e. g1* <= g2*. Given two sets of n data points
y_1, ..., y_n and z_1, ..., z_n that are observed at (the same)
deterministic design points x_1, ..., x_n, the estimates are
obtained by minimizing the Least Squares criterion L(a, b) =
sum_{i=1}^n (y_i - a_i)^2 w1(x_i) + sum_{i=1}^n (z_i - b_i)^2
w2(x_i) over the class of pairs of vectors (a, b) such that a
and b are isotonic and a_i <= b_i for all i = 1, ..., n. We
offer two different approaches to compute the estimates: a
projected subgradient algorithm where the projection is
calculated using a PAVA as well as Dykstra's cyclical
projection algorithm.
Diff between OrdMonReg versions 1.0.1 dated 2009-07-21 and 1.0.2 dated 2009-10-18
OrdMonReg-1.0.1/OrdMonReg/R/boundedAntiMean.R |only OrdMonReg-1.0.1/OrdMonReg/R/boundedAntiMeanTwo.R |only OrdMonReg-1.0.1/OrdMonReg/R/boundedIsoMean.R |only OrdMonReg-1.0.1/OrdMonReg/R/boundedIsoMeanTwo.R |only OrdMonReg-1.0.1/OrdMonReg/man/boundedAntiMeanTwo.Rd |only OrdMonReg-1.0.1/OrdMonReg/man/boundedIsoMean.Rd |only OrdMonReg-1.0.2/OrdMonReg/CHANGES | 6 +++++ OrdMonReg-1.0.2/OrdMonReg/DESCRIPTION | 16 +++++++------- OrdMonReg-1.0.2/OrdMonReg/R/BoundedAntiMean.R |only OrdMonReg-1.0.2/OrdMonReg/R/BoundedAntiMeanTwo.R |only OrdMonReg-1.0.2/OrdMonReg/R/BoundedIsoMean.R |only OrdMonReg-1.0.2/OrdMonReg/R/BoundedIsoMeanTwo.R |only OrdMonReg-1.0.2/OrdMonReg/R/BoundedIsoMeanTwoDykstra.R |only OrdMonReg-1.0.2/OrdMonReg/R/LSfunctional.R | 2 - OrdMonReg-1.0.2/OrdMonReg/R/MA.R | 2 - OrdMonReg-1.0.2/OrdMonReg/R/Subgradient.R | 2 - OrdMonReg-1.0.2/OrdMonReg/R/astar_1.R | 2 - OrdMonReg-1.0.2/OrdMonReg/R/bstar_n.R | 2 - OrdMonReg-1.0.2/OrdMonReg/R/disp.R |only OrdMonReg-1.0.2/OrdMonReg/R/minK1.R |only OrdMonReg-1.0.2/OrdMonReg/R/minK2.R |only OrdMonReg-1.0.2/OrdMonReg/R/minK3.R |only OrdMonReg-1.0.2/OrdMonReg/man/BoundedAntiMeanTwo.Rd |only OrdMonReg-1.0.2/OrdMonReg/man/BoundedIsoMean.Rd |only OrdMonReg-1.0.2/OrdMonReg/man/BoundedIsoMeanTwoDykstra.Rd |only OrdMonReg-1.0.2/OrdMonReg/man/disp.Rd |only OrdMonReg-1.0.2/OrdMonReg/man/minK.Rd |only OrdMonReg-1.0.2/OrdMonReg/man/ordMonReg-package.Rd | 16 ++++++++------ 28 files changed, 30 insertions(+), 18 deletions(-)
Author: Henrik Bengtsson
Diff between R.cache versions 0.1.9 dated 2009-09-18 and 0.2.0 dated 2009-10-18
Title: Fast and light-weight caching of objects
Description: Methods for memoization, that is, caching arbitrary R
objects in persistent memory. Objects can be loaded and saved
stratified on a set of hashing objects.
DESCRIPTION | 10 ++++++----
R/loadCache.R | 23 +++++------------------
R/private.baseLoad.R |only
R/readCacheHeader.R | 24 ++++--------------------
inst/NEWS | 5 +++++
5 files changed, 20 insertions(+), 42 deletions(-)
Author: Paul Gilbert
Diff between EvalEst versions 2009.10-1 dated 2009-10-13 and 2009.10-2 dated 2009-10-18
Title: Dynamic Systems Estimation - extensions
Description: Multivariate Time Series - extensions.See ?00dse-Intro for
more details.
DESCRIPTION | 8 ++++----
NEWS | 21 ++++++++++++++-------
inst/doc/EvalEst-guide.pdf |binary
3 files changed, 18 insertions(+), 11 deletions(-)
Author: Gopal, V. and Li, Z. and Casella, G.
Title: Bayesian Association Model for Genomic Data with Missing
Covariates
Description: This package fits a linear mixed model where the
covariates for the random effects have missing values.
Diff between BAMD versions 1.2 dated 2009-04-21 and 3.1 dated 2009-10-18
BAMD-1.2/BAMD/R/gs.R |only BAMD-1.2/BAMD/R/vs.R |only BAMD-1.2/BAMD/README |only BAMD-1.2/BAMD/man/gs.Rd |only BAMD-1.2/BAMD/man/vs.Rd |only BAMD-3.1/BAMD/DESCRIPTION | 9 +++++---- BAMD-3.1/BAMD/NAMESPACE | 2 +- BAMD-3.1/BAMD/R/gibbsSampler.R |only BAMD-3.1/BAMD/R/variableSelector.R |only BAMD-3.1/BAMD/man/BAMD-package.Rd | 6 +++--- BAMD-3.1/BAMD/man/egMat.Rd | 2 +- BAMD-3.1/BAMD/man/gibbsSampler.Rd |only BAMD-3.1/BAMD/man/variableSelector.Rd |only BAMD-3.1/BAMD/src/computeLoop.c | 12 +++++------- 14 files changed, 15 insertions(+), 16 deletions(-)