Author: Russell V. Lenth
Title: Response-surface analysis
Description: Provides functions to generate response-surface designs,
fit first- and second-order response-surface models, make
contour plots, obtain the path of steepest ascent, and do
canonical analysis.
Diff between rsm versions 1.13 dated 2009-10-12 and 1.20 dated 2009-10-20
rsm-1.13/rsm/inst/doc/rsm.Rtex |only rsm-1.20/rsm/DESCRIPTION | 8 ++++---- rsm-1.20/rsm/inst/CITATION | 35 +++++++++++++++++------------------ rsm-1.20/rsm/inst/NEWS | 22 ++++++++++++++++++---- rsm-1.20/rsm/inst/doc/rsm.Rnw |only rsm-1.20/rsm/inst/doc/rsm.bib |only rsm-1.20/rsm/inst/doc/rsm.pdf |binary rsm-1.20/rsm/man/FO.Rd | 5 +++++ rsm-1.20/rsm/man/bbd.Rd | 7 ++++++- rsm-1.20/rsm/man/ccd.Rd | 4 ++++ rsm-1.20/rsm/man/ccd.pick.Rd | 7 ++++++- rsm-1.20/rsm/man/coded.data.Rd | 5 +++++ rsm-1.20/rsm/man/contour.lm.Rd | 5 +++++ rsm-1.20/rsm/man/model.data.Rd | 5 +++++ rsm-1.20/rsm/man/rsm-package.Rd | 4 ++++ rsm-1.20/rsm/man/rsm.Rd | 6 +++++- rsm-1.20/rsm/man/steepest.Rd | 10 ++++++++-- 17 files changed, 92 insertions(+), 31 deletions(-)
Author: Jeff Gentry
Diff between twitteR versions 0.1.0 dated 2009-07-24 and 0.1.2 dated 2009-10-20
Title: R based Twitter client
Description: Provides an interface to the Twitter web API
DESCRIPTION | 6 -
R/allGenerics.R |only
R/classes.R | 133 ++++++++++++++++++++++++++-
R/json.R | 14 ++
R/status.R | 7 +
R/timeline.R | 2
R/users.R | 12 +-
inst/doc/twitteR.Rnw | 219 ++++++++++++++++++++++++++++++++++++++++++++-
inst/doc/twitteR.pdf |binary
man/directMessage-class.Rd | 34 ++++++
man/status-class.Rd | 28 +++++
man/updateStatus.Rd | 4
man/user-class.Rd | 45 ++++++++-
13 files changed, 476 insertions(+), 28 deletions(-)
Author: Derek Young Tatiana Benaglia Didier Chauveau Ryan Elmore Tom
Hettmansperger David Hunter Hoben Thomas Fengjuan Xuan
Title: Tools for analyzing finite mixture models
Description: A collection of R functions for analyzing finite mixture
models. This package is based upon work supported by the
National Science Foundation under Grant No. SES-0518772.
Diff between mixtools versions 0.4.1 dated 2009-07-02 and 0.4.3 dated 2009-10-20
DESCRIPTION | 10 +++--- R/gammamixEM.R |only R/gammamixinit.R |only R/lambda.R | 55 +++++++++++++++++++--------------- R/plot.npEM.R | 5 +-- R/regmixEMloc.R | 79 +++++++++++++++++++++++++------------------------ R/summary.mixEM.R | 2 - inst |only man/gammamixEM.Rd |only man/initializations.Rd | 7 ++-- man/plot.npEM.Rd | 8 +++- 11 files changed, 91 insertions(+), 75 deletions(-)
Author: Douglas Bates
Diff between lme4 versions 0.999375-31 dated 2009-05-24 and 0.999375-32 dated 2009-10-20
Title: Linear mixed-effects models using S4 classes
Description: Fit linear and generalized linear mixed-effects models.
lme4-0.999375-31/lme4/inst/doc/AGQ.Rnw |only
lme4-0.999375-31/lme4/inst/doc/AGQ.pdf |only
lme4-0.999375-31/lme4/inst/doc/SpecifyingLMMs.Rnw |only
lme4-0.999375-31/lme4/inst/doc/SpecifyingLMMs.pdf |only
lme4-0.999375-31/lme4/inst/doc/Theory.rel |only
lme4-0.999375-31/lme4/inst/doc/auto |only
lme4-0.999375-31/lme4/tests/StratVar.R |only
lme4-0.999375-32/lme4/ChangeLog | 18 +
lme4-0.999375-32/lme4/DESCRIPTION | 10
lme4-0.999375-32/lme4/R/lmer.R | 119 +++++---
lme4-0.999375-32/lme4/ToDo | 2
lme4-0.999375-32/lme4/inst/doc/Implementation.pdf |binary
lme4-0.999375-32/lme4/inst/doc/PLSvGLS.pdf |binary
lme4-0.999375-32/lme4/inst/doc/Theory.pdf |binary
lme4-0.999375-32/lme4/man/BIC.Rd | 6
lme4-0.999375-32/lme4/man/lmList-class.Rd | 8
lme4-0.999375-32/lme4/man/lmList.Rd | 2
lme4-0.999375-32/lme4/man/lmer.Rd | 10
lme4-0.999375-32/lme4/man/mer-class.Rd | 1
lme4-0.999375-32/lme4/man/ranef.Rd | 2
lme4-0.999375-32/lme4/src/init.c | 35 ++
lme4-0.999375-32/lme4/src/lmer.c | 2
lme4-0.999375-32/lme4/tests/lmer-1.R | 34 +-
lme4-0.999375-32/lme4/tests/lmer-1.Rout.save | 295 +++++++++++++++++++---
lme4-0.999375-32/lme4/tests/lmer-conv.R | 1
lme4-0.999375-32/lme4/tests/nlmer.Rout.save | 37 --
26 files changed, 429 insertions(+), 153 deletions(-)
Author: Vincent Calcagno
Diff between glmulti versions 0.5-2 dated 2009-10-01 and 0.5-3 dated 2009-10-20
Title: GLM model selection and multimodel inference made easy
Description: Automated model selection for GLMs. Provides a wrapper for
glm and similar functions, automatically generating all
possible models (under constraints set by the user) with the
specified response and explanatory variables, and finding the
best models in terms of some Information Criterion (AIC, AICc
or BIC). Can handle very large numbers of candidate models.
Features a Genetic Algorithm to find the best models when an
exhaustive screening of the candidates is not feasible.
DESCRIPTION | 8 ++++----
R/glmulti.R | 13 ++++++++++---
inst/java/glmulti.jar |binary
inst/java/glmulti/GLMModel.class |binary
inst/java/glmulti/ModelGenerator.class |binary
5 files changed, 14 insertions(+), 7 deletions(-)
Author: Stefano Iacus
Diff between cem versions 1.0.111 dated 2009-08-31 and 1.0.116 dated 2009-10-20
Title: CEM: Software for Coarsened Exact Matching
Description: This program implements the coarsened exact matching
algorithm (and many extensions) described in Stefano M. Iacus,
Gary King, and Giuseppe Porro, "Causal Inference Without
Balance Checking: Coarsened Exact Matching,"
http://gking.harvard.edu/files/abs/cem-plus-abs.shtml
DESCRIPTION | 14
R/cem.main.R | 4
R/imb.meas.R | 65
inst/doc/Rplots.pdf | 4
inst/doc/cem.Rnw | 2
inst/doc/cem.pdf | 4371 ++++++++++++++++++++++++--------------------------
inst/doc/coarsen1.pdf | 4
inst/doc/coarsen2.pdf | 4
inst/doc/index.shtml | 30
inst/doc/teff.pdf | 4
10 files changed, 2245 insertions(+), 2257 deletions(-)
Author: Bob Wheeler
Diff between RelativeRisk versions 1.0-1 dated 2009-09-30 and 1.1-1 dated 2009-10-20
Title: Relative Risk
Description: Relative risk estimation for prospective and retrospective
data.
DESCRIPTION | 8 ++--
R/as.afactor.R | 28 ++++++++++++--
R/as.twolevel.R | 9 +++-
R/est.rr.R | 51 +++++++++++++++++++++----
R/tally.data.R | 104 ++++++++++++++++++++++++++++++++++------------------
data/Chocolates.rda |only
data/Melanoma.rda |only
data/TitanicMat.rda |binary
inst |only
man/AsAFactor.Rd | 25 ++++++++++--
man/AsTwoLevel.Rd | 8 ++--
man/ChocolatesRd.Rd |only
man/EstRR.Rd | 12 +++++-
man/Melanoma.Rd |only
14 files changed, 181 insertions(+), 64 deletions(-)
Author: Jon T. Schnute
Diff between PBSmodelling versions 2.21 dated 2009-08-19 and 2.50.162 dated 2009-10-20
Title: GUI Tools Made Easy: Interact with Models, Explore Data, Give
Dynamic Presentations
Description: PBS Modelling provides software to facilitate the design,
testing, and operation of computer models. It focuses
particularly on tools that make it easy to construct and edit a
customized graphical user interface (GUI). Although it depends
heavily on the R interface to the Tcl/Tk package, a user does
not need to know Tcl/Tk. The package contains examples that
illustrate models built with other R packages, including
PBSmapping, deSolve, PBSddesolve, and BRugs. It also serves as
a convenient prototype for building new R packages, along with
instructions and batch files to facilitate that process. The R
directory '.../library/PBSmodelling/doc' includes a complete
user guide PBSmodelling-UG.pdf. To use this package
effectively, please consult the guide.
PBSmodelling-2.21/PBSmodelling/inst/doc/PBSmodelling-Updates.pdf |only
PBSmodelling-2.21/PBSmodelling/inst/examples/swissTalk.txt |only
PBSmodelling-2.21/PBSmodelling/man/getPrefix.Rd |only
PBSmodelling-2.21/PBSmodelling/man/getSuffix.Rd |only
PBSmodelling-2.50.162/PBSmodelling/DESCRIPTION | 10
PBSmodelling-2.50.162/PBSmodelling/NAMESPACE | 8
PBSmodelling-2.50.162/PBSmodelling/R/guiFuns.r | 131 +
PBSmodelling-2.50.162/PBSmodelling/R/listFuns.r | 2
PBSmodelling-2.50.162/PBSmodelling/R/option_manager.r |only
PBSmodelling-2.50.162/PBSmodelling/R/presentTalk.r | 1075 ++++------
PBSmodelling-2.50.162/PBSmodelling/R/projectFuns.r | 144 -
PBSmodelling-2.50.162/PBSmodelling/R/supportFuns.r | 227 +-
PBSmodelling-2.50.162/PBSmodelling/R/zzz.r | 21
PBSmodelling-2.50.162/PBSmodelling/inst/doc/ChangeLog.txt | 46
PBSmodelling-2.50.162/PBSmodelling/inst/doc/PBSmodelling-UG.pdf |binary
PBSmodelling-2.50.162/PBSmodelling/inst/doc/PBSmodellingIntro.pdf |binary
PBSmodelling-2.50.162/PBSmodelling/inst/doc/index.html | 2
PBSmodelling-2.50.162/PBSmodelling/inst/examples/swisstalk.xml |only
PBSmodelling-2.50.162/PBSmodelling/inst/thirdparty |only
PBSmodelling-2.50.162/PBSmodelling/inst/unitTests |only
PBSmodelling-2.50.162/PBSmodelling/man/createWin.Rd | 45
PBSmodelling-2.50.162/PBSmodelling/man/doAction.Rd | 10
PBSmodelling-2.50.162/PBSmodelling/man/findPrefix.Rd | 42
PBSmodelling-2.50.162/PBSmodelling/man/findProgram.Rd |only
PBSmodelling-2.50.162/PBSmodelling/man/getOptions.Rd |only
PBSmodelling-2.50.162/PBSmodelling/man/getOptionsFileName.Rd |only
PBSmodelling-2.50.162/PBSmodelling/man/getOptionsPrefix.Rd |only
PBSmodelling-2.50.162/PBSmodelling/man/getPBSoptions.Rd | 2
PBSmodelling-2.50.162/PBSmodelling/man/getWinAct.Rd | 2
PBSmodelling-2.50.162/PBSmodelling/man/getWinVal.Rd | 2
PBSmodelling-2.50.162/PBSmodelling/man/loadOptions.Rd |only
PBSmodelling-2.50.162/PBSmodelling/man/loadOptionsGUI.Rd |only
PBSmodelling-2.50.162/PBSmodelling/man/openFile.Rd | 15
PBSmodelling-2.50.162/PBSmodelling/man/openPackageFile.Rd | 10
PBSmodelling-2.50.162/PBSmodelling/man/openProjFiles.Rd | 8
PBSmodelling-2.50.162/PBSmodelling/man/option-class.Rd |only
PBSmodelling-2.50.162/PBSmodelling/man/presentTalk.Rd | 25
PBSmodelling-2.50.162/PBSmodelling/man/promptOpenFile.Rd | 15
PBSmodelling-2.50.162/PBSmodelling/man/promptSaveFile.Rd | 14
PBSmodelling-2.50.162/PBSmodelling/man/selectDir.Rd |only
PBSmodelling-2.50.162/PBSmodelling/man/selectFile.Rd |only
PBSmodelling-2.50.162/PBSmodelling/man/setWidgetColor.Rd |only
PBSmodelling-2.50.162/PBSmodelling/man/setwdGUI.Rd | 39
PBSmodelling-2.50.162/PBSmodelling/man/updateGUI.Rd | 9
PBSmodelling-2.50.162/PBSmodelling/man/viewCode.Rd | 6
45 files changed, 1050 insertions(+), 860 deletions(-)
Author: Jan de Leeuw, Kurt Hornik, Patrick Mair
Title: Active set and generalized PAVA for isotone optimization
Description: This package contains two main functions: gpava() for
solving general isotone regression problem using the
pool-adjacent-violators algorithm (PAVA). activeSet() provides
a framework of active set methods for isotone optimization
problems with arbitrary order restrictions. Various types of
loss functions are pre-spcified.
Diff between isotone versions 0.8-7 dated 2009-10-15 and 1.0-0 dated 2009-10-20
DESCRIPTION | 11 - inst/CITATION |only inst/doc/isotone.Rnw | 340 ++++++++++++++++++++++++--------------------------- inst/doc/isotone.bib | 249 ++++++++++++++++++++++++------------- inst/doc/isotone.pdf |binary man/activeSet.Rd | 4 man/gpava.Rd | 4 7 files changed, 336 insertions(+), 272 deletions(-)
Author: Christian B. Pipper
Diff between multmod versions 0.5 dated 2009-08-31 and 0.6 dated 2009-10-20
Title: Testing of multiple outcomes
Description: Testing of multiple outcomes using i.i.d. decompositions
DESCRIPTION | 6 +++---
NEWS | 3 ++-
inst/CITATION | 1 +
3 files changed, 6 insertions(+), 4 deletions(-)
Author: Zachariah Gompert, C. Alex Buerkle
Title: methods for analyzing introgression between divergent lineages
Description: introgress provides functions for analyzing introgression
of genotypes between divergent, hybridizing lineages, including
estimating genomic clines from multi-locus genotype data and
testing for deviations from neutral expectations. Functions are
also provided for maximum likelihood estimation of molecular
hybrid index and graphical analysis.
Diff between introgress versions 1.2 dated 2009-09-07 and 1.2.1 dated 2009-10-20
DESCRIPTION | 6 +++--- R/genomic.clines.R | 24 +++++++++++++++++++----- R/prepare.data.R | 13 +++++++------ R/s.wrapper.R | 2 +- 4 files changed, 30 insertions(+), 15 deletions(-)
Author: Luke Harmon
Diff between geiger versions 1.2-14 dated 2008-11-21 and 1.3-1 dated 2009-10-20
Title: Analysis of evolutionary diversification
Description: Running macroevolutionary simulation, and estimating
parameters related to diversification from comparative
phylogenetic data.
DESCRIPTION | 17 ++++++++++------
NAMESPACE | 2 +
R/birthdeath.tree.R | 2 -
R/fitContinuous.R | 6 ++++-
R/fitDiscrete.R | 6 +++--
R/getAncStates.R |only
R/medusa.R |only
R/node.leaves.R | 1
R/treedata.R | 2 -
man/BDsim.Rd | 2 -
man/area.between.curves.Rd | 2 -
man/deltaTree.Rd | 40 +++++++++++++++++---------------------
man/dtt.Rd | 47 +++++++++++++++++++++------------------------
man/fitContinuous.Rd | 26 ++++++++++--------------
man/fitDiscrete.Rd | 31 +++++++++++++----------------
man/geiger-package.Rd | 7 ------
man/geospiza.Rd | 8 -------
man/getAncStates.Rd |only
man/ic.sigma.Rd | 4 ---
man/medusa.Rd |only
man/name.check.Rd | 10 ---------
man/phy.anova.Rd | 3 --
man/prune.extinct.taxa.Rd | 4 ---
man/rate.estimate.Rd | 3 --
man/rc.Rd | 3 --
man/sim.char.Rd | 3 --
man/tip.disparity.Rd | 3 --
27 files changed, 92 insertions(+), 140 deletions(-)
Author: Terry Therneau
Diff between date versions 1.2-28 dated 2009-09-10 and 1.2-29 dated 2009-10-20
Title: Functions for handling dates
Description: Functions for handling dates.
ChangeLog | 7 +++++++
DESCRIPTION | 8 ++++----
R/date.R | 2 +-
3 files changed, 12 insertions(+), 5 deletions(-)
Author: Roger Bivand
Diff between classInt versions 0.1-12 dated 2009-09-18 and 0.1-13 dated 2009-10-20
Title: Choose univariate class intervals
Description: A package for choosing univariate class intervals for
mapping or other graphics purposes
ChangeLog | 9 +++++++--
DESCRIPTION | 8 ++++----
R/classInt.R | 35 +++++++++++++++++++++++------------
inst |only
man/classIntervals.Rd | 2 +-
5 files changed, 35 insertions(+), 19 deletions(-)
Author: Sameer Kumar Prayaga (during 2008) and Dirk Eddelbuettel with
contributions by Neil Tiffin and Joe Conway
Title: R interface to the PostgreSQL database system
Description: Database interface and PostgreSQL driver for R This
version complies with the database interface definition as
implemented in the package DBI.
Diff between RPostgreSQL versions 0.1-5 dated 2009-10-14 and 0.1-6 dated 2009-10-20
DESCRIPTION | 12 ++++++------ R/PostgreSQL.R | 6 +++--- inst/ChangeLog | 22 ++++++++++++++++++++++ tests/connectWithNull.R | 3 ++- tests/dataTypeTests.R | 3 ++- tests/datetimeTests.R | 3 ++- tests/dbExistsIssue.R | 4 ++-- tests/dbWriteTableTest.R | 3 ++- tests/loadDriverAndConnect.R | 3 ++- tests/selectWhereZero.R | 19 ++++++++++--------- tests/selectWithAlias.R | 4 ++-- 11 files changed, 55 insertions(+), 27 deletions(-)
Author: Andrew Harris
Title: FITS (Flexible Image Transport System) utilities
Description: Utilities to read and write files in the FITS (Flexible
Image Transport System) format, a standard format in astronomy.
Present low-level routines allow: * Reading and parsing FITS
headers * Reading FITS images (multi-dimensional arrays) *
Reading FITS binary tables * Writing FITS images
(multi-dimensional arrays) Higher-level functions allow: *
Reading files composed of one or more headers and a single
(perhaps multidimensional) image or single bintable * Reading
bintables into data frames * Generating vectors for image array
axes * Scaling and writing images as 16-bit integers Known
incompletenesses are reading FITS ASCII table and random group
extensions, as well as bit, complex, and array descriptor data
types in binary tables.
Diff between FITSio versions 1.0-3 dated 2009-04-14 and 1.1-0 dated 2009-10-20
ChangeLog | 22 ++++++++++++---- DESCRIPTION | 8 +++--- R/readFITSarray.R | 38 +++++++++++++++------------- R/readFITSheader.R | 66 ++++++++++++++++++++++++++++++++++---------------- man/FITSio-package.Rd | 20 +++++++-------- man/readFITSarray.Rd | 15 ++++++----- 6 files changed, 104 insertions(+), 65 deletions(-)
Author: Alejandro Jara
Diff between DPpackage versions 1.0-7 dated 2009-03-16 and 1.0-8 dated 2009-10-20
Title: Bayesian Nonparametric and Semiparametric Analysis
Description: This package contains functions to perform inference via
simulation from the posterior distributions for Bayesian
nonparametric and semiparametric models. Although the name of
the package was motivated by the Dirichlet Process prior, the
package considers and will consider other priors on functional
spaces. So far, DPpackage includes models considering Dirichlet
Processes, Dependent Dirichlet Processes, Hierarchical
Dirichlet Processes, Polya Trees, Mixtures of Triangular
distributions, and Random Bernstein polynomials priors. The
package also includes models considering Penalized B-Splines.
Currently the package includes semiparametric models for
marginal and conditional density estimation, ROC curve
analysis, interval censored data, binary regression models,
generalized linear mixed models, IRT type models, and
generalized additive models. The package also contains
functions to compute Pseudo-Bayes factors for model comparison,
and to elicitate the precision parameter of the Dirichlet
Process. To maximize computational efficiency, the actual
sampling for each model is done in compiled FORTRAN. The
functions return objects which can be subsequently analyzed
with functions provided in the coda package.
DPpackage-1.0-7/DPpackage/src/FPTrasch.f |only
DPpackage-1.0-7/DPpackage/src/FPTraschpoisson.f |only
DPpackage-1.0-8/DPpackage/DESCRIPTION | 22
DPpackage-1.0-8/DPpackage/NAMESPACE | 46
DPpackage-1.0-8/DPpackage/R/BDPdensity.R | 16
DPpackage-1.0-8/DPpackage/R/CSDPbinary.R | 6
DPpackage-1.0-8/DPpackage/R/DPMglmm.R | 990 +++++++-------
DPpackage-1.0-8/DPpackage/R/DPMlmm.R | 480 +++---
DPpackage-1.0-8/DPpackage/R/DPMmeta.R | 18
DPpackage-1.0-8/DPpackage/R/DPMolmm.R | 49
DPpackage-1.0-8/DPpackage/R/DPMrandom.R | 6
DPpackage-1.0-8/DPpackage/R/DPMrasch.R |only
DPpackage-1.0-8/DPpackage/R/DPMraschpoisson.R |only
DPpackage-1.0-8/DPpackage/R/DPbetabinom.R | 144 +-
DPpackage-1.0-8/DPpackage/R/DPbinary.R | 6
DPpackage-1.0-8/DPpackage/R/DPcaterpillar.R | 6
DPpackage-1.0-8/DPpackage/R/DPcdensity.R | 311 ++--
DPpackage-1.0-8/DPpackage/R/DPdensity.R | 826 ++++++-----
DPpackage-1.0-8/DPpackage/R/DPelicit.R | 6
DPpackage-1.0-8/DPpackage/R/DPglmm.R | 346 +---
DPpackage-1.0-8/DPpackage/R/DPlmm.R | 427 ++----
DPpackage-1.0-8/DPpackage/R/DPmeta.R | 22
DPpackage-1.0-8/DPpackage/R/DPmultmeta.R | 296 ++--
DPpackage-1.0-8/DPpackage/R/DPolmm.R | 6
DPpackage-1.0-8/DPpackage/R/DPpsBF.R | 6
DPpackage-1.0-8/DPpackage/R/DPrandom.R | 74 -
DPpackage-1.0-8/DPpackage/R/DPrasch.R | 928 ++++++-------
DPpackage-1.0-8/DPpackage/R/DPraschpoisson.R | 769 ++++++-----
DPpackage-1.0-8/DPpackage/R/DProc.R | 6
DPpackage-1.0-8/DPpackage/R/DPsurvint.R | 6
DPpackage-1.0-8/DPpackage/R/FPTbinary.R | 6
DPpackage-1.0-8/DPpackage/R/FPTrasch.R | 1000 ++++++--------
DPpackage-1.0-8/DPpackage/R/FPTraschpoisson.R | 822 ++++++-----
DPpackage-1.0-8/DPpackage/R/HDPMcdensity.R |only
DPpackage-1.0-8/DPpackage/R/HDPMdensity.R |only
DPpackage-1.0-8/DPpackage/R/LDDPdensity.R | 64
DPpackage-1.0-8/DPpackage/R/LDDPrasch.R |only
DPpackage-1.0-8/DPpackage/R/LDDPraschpoisson.R |only
DPpackage-1.0-8/DPpackage/R/LDDPsurvival.R | 142 --
DPpackage-1.0-8/DPpackage/R/PSgam.R | 6
DPpackage-1.0-8/DPpackage/R/PTdensity.R | 98 -
DPpackage-1.0-8/DPpackage/R/PTglmm.R | 1251 ++++++++----------
DPpackage-1.0-8/DPpackage/R/PTlm.R | 92 -
DPpackage-1.0-8/DPpackage/R/PTlmm.R | 631 ++++-----
DPpackage-1.0-8/DPpackage/R/PTmeta.R | 22
DPpackage-1.0-8/DPpackage/R/PTolmm.R | 96 -
DPpackage-1.0-8/DPpackage/R/PTrandom.R | 32
DPpackage-1.0-8/DPpackage/R/Pbinary.R | 6
DPpackage-1.0-8/DPpackage/R/Plm.R | 36
DPpackage-1.0-8/DPpackage/R/TDPdensity.R | 6
DPpackage-1.0-8/DPpackage/R/ps.R | 18
DPpackage-1.0-8/DPpackage/inst |only
DPpackage-1.0-8/DPpackage/man/DPMglmm.Rd | 2
DPpackage-1.0-8/DPpackage/man/DPMlmm.Rd | 2
DPpackage-1.0-8/DPpackage/man/DPMmeta.Rd | 14
DPpackage-1.0-8/DPpackage/man/DPMolmm.Rd | 6
DPpackage-1.0-8/DPpackage/man/DPMrasch.Rd |only
DPpackage-1.0-8/DPpackage/man/DPMraschpoisson.Rd |only
DPpackage-1.0-8/DPpackage/man/DPdensity.Rd | 64
DPpackage-1.0-8/DPpackage/man/DPglmm.Rd | 36
DPpackage-1.0-8/DPpackage/man/DPlmm.Rd | 2
DPpackage-1.0-8/DPpackage/man/DPmeta.Rd | 10
DPpackage-1.0-8/DPpackage/man/DPolmm.Rd | 2
DPpackage-1.0-8/DPpackage/man/DPrasch.Rd | 132 +
DPpackage-1.0-8/DPpackage/man/DPraschpoisson.Rd | 90 -
DPpackage-1.0-8/DPpackage/man/DProc.Rd | 2
DPpackage-1.0-8/DPpackage/man/DPsurvint.Rd | 3
DPpackage-1.0-8/DPpackage/man/FPTrasch.Rd | 94 -
DPpackage-1.0-8/DPpackage/man/FPTraschpoisson.Rd | 84 -
DPpackage-1.0-8/DPpackage/man/HDPMcdensity.Rd |only
DPpackage-1.0-8/DPpackage/man/HDPMdensity.Rd |only
DPpackage-1.0-8/DPpackage/man/LDDPdensity.Rd | 5
DPpackage-1.0-8/DPpackage/man/LDDPrasch.Rd |only
DPpackage-1.0-8/DPpackage/man/LDDPraschpoisson.Rd |only
DPpackage-1.0-8/DPpackage/man/LDDPsurvival.Rd | 7
DPpackage-1.0-8/DPpackage/man/PSgam.Rd | 4
DPpackage-1.0-8/DPpackage/man/PTdensity.Rd | 8
DPpackage-1.0-8/DPpackage/man/PTglmm.Rd | 4
DPpackage-1.0-8/DPpackage/man/PTlm.Rd | 4
DPpackage-1.0-8/DPpackage/man/PTlmm.Rd | 4
DPpackage-1.0-8/DPpackage/man/PTmeta.Rd | 30
DPpackage-1.0-8/DPpackage/man/PTolmm.Rd | 4
DPpackage-1.0-8/DPpackage/man/predict.HDPMcdensity.Rd |only
DPpackage-1.0-8/DPpackage/man/predict.HDPMdensity.Rd |only
DPpackage-1.0-8/DPpackage/man/ps.Rd | 4
DPpackage-1.0-8/DPpackage/src/BDPdensity.f | 6
DPpackage-1.0-8/DPpackage/src/CSDPbinaryl.f | 6
DPpackage-1.0-8/DPpackage/src/DPMglmmgam.f | 6
DPpackage-1.0-8/DPpackage/src/DPMglmmlogit.f | 112 -
DPpackage-1.0-8/DPpackage/src/DPMglmmpois.f | 6
DPpackage-1.0-8/DPpackage/src/DPMglmmprob.f | 6
DPpackage-1.0-8/DPpackage/src/DPMlm.f | 6
DPpackage-1.0-8/DPpackage/src/DPMlmm.f | 6
DPpackage-1.0-8/DPpackage/src/DPMmeta.f | 6
DPpackage-1.0-8/DPpackage/src/DPMolmmp.f | 6
DPpackage-1.0-8/DPpackage/src/DPMrasch.f |only
DPpackage-1.0-8/DPpackage/src/DPMraschpoisson.f |only
DPpackage-1.0-8/DPpackage/src/DPMraschpoissonh.f |only
DPpackage-1.0-8/DPpackage/src/DPbetabinom.f | 6
DPpackage-1.0-8/DPpackage/src/DPbinaryc.f | 6
DPpackage-1.0-8/DPpackage/src/DPbinaryl.f | 6
DPpackage-1.0-8/DPpackage/src/DPbinaryp.f | 6
DPpackage-1.0-8/DPpackage/src/DPbivdensityg.f | 107 +
DPpackage-1.0-8/DPpackage/src/DPbivdensityn.f | 103 +
DPpackage-1.0-8/DPpackage/src/DPdensityg.f | 163 +-
DPpackage-1.0-8/DPpackage/src/DPdensityn.f | 105 +
DPpackage-1.0-8/DPpackage/src/DPdensityreg.f | 6
DPpackage-1.0-8/DPpackage/src/DPglmmgam.f | 6
DPpackage-1.0-8/DPpackage/src/DPglmmlogit.f | 6
DPpackage-1.0-8/DPpackage/src/DPglmmlogita.f | 22
DPpackage-1.0-8/DPpackage/src/DPglmmpois.f | 6
DPpackage-1.0-8/DPpackage/src/DPglmmprob.f | 6
DPpackage-1.0-8/DPpackage/src/DPlmm.f | 6
DPpackage-1.0-8/DPpackage/src/DPmeta.f | 6
DPpackage-1.0-8/DPpackage/src/DPmultmeta.f | 6
DPpackage-1.0-8/DPpackage/src/DPolmmp.f | 21
DPpackage-1.0-8/DPpackage/src/DPrasch.f | 789 ++++++-----
DPpackage-1.0-8/DPpackage/src/DPraschpoisson.f | 599 ++++----
DPpackage-1.0-8/DPpackage/src/DPsurvint.f | 6
DPpackage-1.0-8/DPpackage/src/FPTbinaryl.f | 6
DPpackage-1.0-8/DPpackage/src/HDPMcdensity.f |only
DPpackage-1.0-8/DPpackage/src/HDPMdensity.f |only
DPpackage-1.0-8/DPpackage/src/LDDPdensity.f | 60
DPpackage-1.0-8/DPpackage/src/LDDPrasch.f |only
DPpackage-1.0-8/DPpackage/src/LDDPraschpoisson.f |only
DPpackage-1.0-8/DPpackage/src/LDDPsurvival.f | 70 -
DPpackage-1.0-8/DPpackage/src/PSgamgam.f | 6
DPpackage-1.0-8/DPpackage/src/PSgamgauss.f | 6
DPpackage-1.0-8/DPpackage/src/PSgamlogit.f | 22
DPpackage-1.0-8/DPpackage/src/PSgampois.f | 6
DPpackage-1.0-8/DPpackage/src/PSgamprob.f | 6
DPpackage-1.0-8/DPpackage/src/PTglmmgam.f | 6
DPpackage-1.0-8/DPpackage/src/PTglmmlogit.f | 6
DPpackage-1.0-8/DPpackage/src/PTglmmpois.f | 6
DPpackage-1.0-8/DPpackage/src/PTglmmprob.f | 6
DPpackage-1.0-8/DPpackage/src/PTlm.f | 6
DPpackage-1.0-8/DPpackage/src/PTlmm.f | 6
DPpackage-1.0-8/DPpackage/src/PTlmp.f | 6
DPpackage-1.0-8/DPpackage/src/PTmdensity.f | 9
DPpackage-1.0-8/DPpackage/src/PTmdensityp.f | 9
DPpackage-1.0-8/DPpackage/src/PTmeta.f | 6
DPpackage-1.0-8/DPpackage/src/PTolmmp.f | 20
DPpackage-1.0-8/DPpackage/src/PTrasch.f |only
DPpackage-1.0-8/DPpackage/src/PTraschpoisson.f |only
DPpackage-1.0-8/DPpackage/src/PTsurv.f | 7
DPpackage-1.0-8/DPpackage/src/PTudensity.f | 6
DPpackage-1.0-8/DPpackage/src/PTudensityp.f | 6
DPpackage-1.0-8/DPpackage/src/Pbinary.f | 6
DPpackage-1.0-8/DPpackage/src/Plm.f | 20
DPpackage-1.0-8/DPpackage/src/TDPdensity.f | 6
DPpackage-1.0-8/DPpackage/src/TDPdensitypl.f | 6
DPpackage-1.0-8/DPpackage/src/ToolsARS.f | 6
DPpackage-1.0-8/DPpackage/src/ToolsBDP.f | 6
DPpackage-1.0-8/DPpackage/src/ToolsDP.f | 6
DPpackage-1.0-8/DPpackage/src/ToolsDistributions.f | 6
DPpackage-1.0-8/DPpackage/src/ToolsHMM.f | 6
DPpackage-1.0-8/DPpackage/src/ToolsMatrix.f | 6
DPpackage-1.0-8/DPpackage/src/ToolsPT.f | 6
DPpackage-1.0-8/DPpackage/src/ToolsPolynomials.f | 6
DPpackage-1.0-8/DPpackage/src/ToolsRfun.c | 4
DPpackage-1.0-8/DPpackage/src/ToolsRnumbers.f | 6
DPpackage-1.0-8/DPpackage/src/ToolsSB.f | 76 +
DPpackage-1.0-8/DPpackage/src/ToolsSlice.f | 6
DPpackage-1.0-8/DPpackage/src/ToolsSparseMatrix.f | 6
DPpackage-1.0-8/DPpackage/src/ToolsSplines.f | 6
DPpackage-1.0-8/DPpackage/src/ToolsSweep.f | 7
DPpackage-1.0-8/DPpackage/src/ToolsTDP.f | 7
167 files changed, 7053 insertions(+), 6354 deletions(-)
Author: Compiled by Kjetil Halvorsen
Title: Functions and Datasets for the book "Bayesian Data Analysis"
Description: Functions for Bayesian Data Analysis, with datasets from
the book "Bayesian data Analysis (second edition)" by Gelman,
Carlin, Stern and Rubin. Not all datasets yet, hopefully
completed soon.
Diff between BayesDA versions 1.0-0 dated 2009-01-30 and 1.0-1 dated 2009-10-20
DESCRIPTION | 30 ++++++++++++++++-------------- 1 file changed, 16 insertions(+), 14 deletions(-)