Author: Dominik Reusser, Till Francke
Title: Visualisation and analysis of output files of the hydrological
model WASIM
Description: Helpful tools for data processing and visualisation of
results of the hydrological model WASIM-ETH.
Diff between wasim versions 1.0 dated 2008-12-17 and 1.1 dated 2009-10-28
wasim-1.0/wasim/R/count.diff.direction.error.R |only wasim-1.0/wasim/R/diagnostic.R |only wasim-1.0/wasim/R/diagnostic_dawson.R |only wasim-1.0/wasim/R/diagnostic_series.R |only wasim-1.0/wasim/R/diagnostic_window.R |only wasim-1.0/wasim/R/k_rel.R |only wasim-1.0/wasim/R/lagtime.R |only wasim-1.0/wasim/R/nashS.R |only wasim-1.0/wasim/R/nashS_HF.R |only wasim-1.0/wasim/man/count.diff.direction.error.Rd |only wasim-1.0/wasim/man/diagnostic.Rd |only wasim-1.0/wasim/man/k_rel.Rd |only wasim-1.0/wasim/man/lagtime.Rd |only wasim-1.0/wasim/man/mean_error.Rd |only wasim-1.0/wasim/man/nashS.Rd |only wasim-1.0/wasim/man/rmse.Rd |only wasim-1.1/wasim/DESCRIPTION | 18 wasim-1.1/wasim/R/p.flow_comp.R | 2 wasim-1.1/wasim/R/read.results.R | 2 wasim-1.1/wasim/R/rmse.R | 2 wasim-1.1/wasim/inst/weisseritz/sd__ww100.asc | 352 wasim-1.1/wasim/inst/weisseritz/suz_ww100.asc | 352 wasim-1.1/wasim/inst/weisseritz/ww100-rh.txt |238892 +++++++++++----------- wasim-1.1/wasim/man/assemble.date.Rd | 45 wasim-1.1/wasim/man/bias.Rd | 55 wasim-1.1/wasim/man/color.factor.Rd | 3 wasim-1.1/wasim/man/convert_q_units.Rd | 4 wasim-1.1/wasim/man/data.types.Rd | 3 wasim-1.1/wasim/man/diff_diff.Rd | 4 wasim-1.1/wasim/man/example.peaks.Rd | 9 wasim-1.1/wasim/man/extract_wasim_params.Rd | 4 wasim-1.1/wasim/man/f.score.Rd | 66 wasim-1.1/wasim/man/highlight.Rd | 14 wasim-1.1/wasim/man/k_hyd.Rd | 4 wasim-1.1/wasim/man/line_sumrain.Rd | 5 wasim-1.1/wasim/man/max_rel_diff.Rd | 4 wasim-1.1/wasim/man/models_dawson.Rd | 2 wasim-1.1/wasim/man/myRead.table.Rd | 9 wasim-1.1/wasim/man/p.storage.Rd | 7 wasim-1.1/wasim/man/read.results.Rd | 8 wasim-1.1/wasim/man/rerange.Rd | 7 wasim-1.1/wasim/man/span.Rd | 6 wasim-1.1/wasim/man/wasim-package.Rd | 17 43 files changed, 119850 insertions(+), 120046 deletions(-)
Author: Steve Juggins
Title: An R package for the analysis of Quaternary science data
Description: Functions for the analysis of Quaternary science data,
including constrained clustering, WA, WAPLS, IKFA, MLRC and MAT
transfer functions, and stratigraphic diagrams.
Diff between rioja versions 0.5-4 dated 2009-10-27 and 0.5-5 dated 2009-10-28
DESCRIPTION | 8 ++++---- inst/ChangeLog | 12 +++++++++--- man/read.CEP.Rd | 4 +++- man/rioja.package.Rd | 4 ++-- 4 files changed, 18 insertions(+), 10 deletions(-)
Author: Simon Urbanek
Diff between rJava versions 0.7-0 dated 2009-08-23 and 0.8-0 dated 2009-10-28
Title: Low-level R to Java interface
Description: Low-level interface to Java VM very much like .C/.Call and
friends. Allows creation of objects, calling methods and
accessing fields.
rJava-0.7-0/rJava/R/classes.R |only
rJava-0.8-0/rJava/DESCRIPTION | 5
rJava-0.8-0/rJava/NAMESPACE | 42
rJava-0.8-0/rJava/NEWS | 105 +
rJava-0.8-0/rJava/R/0classes.R |only
rJava-0.8-0/rJava/R/J.R |only
rJava-0.8-0/rJava/R/arrays.R |only
rJava-0.8-0/rJava/R/call.R | 208 +-
rJava-0.8-0/rJava/R/comparison.R |only
rJava-0.8-0/rJava/R/completion.R |only
rJava-0.8-0/rJava/R/exceptions.R | 22
rJava-0.8-0/rJava/R/import.R |only
rJava-0.8-0/rJava/R/instanceof.R |only
rJava-0.8-0/rJava/R/jinit.R | 17
rJava-0.8-0/rJava/R/methods.R | 4
rJava-0.8-0/rJava/R/reflection.R | 282 ++-
rJava-0.8-0/rJava/R/rep.R |only
rJava-0.8-0/rJava/R/serialize.R | 2
rJava-0.8-0/rJava/R/tools.R |only
rJava-0.8-0/rJava/R/windows/FirstLib.R | 2
rJava-0.8-0/rJava/R/with.R | 151 +
rJava-0.8-0/rJava/configure | 220 ++
rJava-0.8-0/rJava/configure.ac | 24
rJava-0.8-0/rJava/inst/java/ArrayDimensionException.class |only
rJava-0.8-0/rJava/inst/java/ArrayDimensionException.java |only
rJava-0.8-0/rJava/inst/java/ArrayWrapper.class |only
rJava-0.8-0/rJava/inst/java/ArrayWrapper.java |only
rJava-0.8-0/rJava/inst/java/ArrayWrapper_Test.class |only
rJava-0.8-0/rJava/inst/java/ArrayWrapper_Test.java |only
rJava-0.8-0/rJava/inst/java/FlatException.class |only
rJava-0.8-0/rJava/inst/java/FlatException.java |only
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rJava-0.8-0/rJava/inst/java/NotComparableException.java |only
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rJava-0.8-0/rJava/inst/java/RJavaTools.class |binary
rJava-0.8-0/rJava/inst/java/RJavaTools.java | 635 ++++++-
rJava-0.8-0/rJava/inst/java/RJavaTools_Test$DummyNonStaticClass.class |only
rJava-0.8-0/rJava/inst/java/RJavaTools_Test$TestException.class |only
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rJava-0.8-0/rJava/inst/java/boot/RJavaClassLoader$UnixFile.class |binary
rJava-0.8-0/rJava/inst/java/boot/RJavaClassLoader.class |binary
rJava-0.8-0/rJava/inst/java/boot/RJavaClassLoader.java | 887 ++++++----
rJava-0.8-0/rJava/inst/javadoc |only
rJava-0.8-0/rJava/jri/NEWS | 2
rJava-0.8-0/rJava/jri/Rengine.java | 248 +-
rJava-0.8-0/rJava/jri/package-info.java |only
rJava-0.8-0/rJava/jri/src/Rengine.c | 58
rJava-0.8-0/rJava/jri/src/jri.h | 7
rJava-0.8-0/rJava/man/Exceptions.Rd |only
rJava-0.8-0/rJava/man/J.Rd |only
rJava-0.8-0/rJava/man/accessOp.Rd | 51
rJava-0.8-0/rJava/man/aslist.Rd |only
rJava-0.8-0/rJava/man/clone.Rd |only
rJava-0.8-0/rJava/man/instanceof.Rd |only
rJava-0.8-0/rJava/man/jarray.Rd | 10
rJava-0.8-0/rJava/man/jarrayRef-class.Rd | 62
rJava-0.8-0/rJava/man/java-tools.Rd |only
rJava-0.8-0/rJava/man/javaImport.Rd |only
rJava-0.8-0/rJava/man/jcall.Rd | 9
rJava-0.8-0/rJava/man/jcast.Rd | 19
rJava-0.8-0/rJava/man/jclassName.Rd |only
rJava-0.8-0/rJava/man/jequals.Rd | 80
rJava-0.8-0/rJava/man/jfloat.Rd | 2
rJava-0.8-0/rJava/man/jnew.Rd | 4
rJava-0.8-0/rJava/man/jobjRef-class.Rd | 8
rJava-0.8-0/rJava/man/jrectRef-class.Rd |only
rJava-0.8-0/rJava/man/jreflection.Rd | 23
rJava-0.8-0/rJava/man/new.Rd |only
rJava-0.8-0/rJava/man/rep.Rd |only
rJava-0.8-0/rJava/man/show.Rd | 4
rJava-0.8-0/rJava/man/with.Rd | 90 -
rJava-0.8-0/rJava/src/Rglue.c | 101 +
rJava-0.8-0/rJava/src/arrayc.c | 163 +
rJava-0.8-0/rJava/src/callJNI.c | 38
rJava-0.8-0/rJava/src/config.h.in | 11
rJava-0.8-0/rJava/src/fields.c | 7
rJava-0.8-0/rJava/src/init.c | 85
rJava-0.8-0/rJava/src/java/ArrayDimensionException.class |only
rJava-0.8-0/rJava/src/java/ArrayDimensionException.java |only
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rJava-0.8-0/rJava/src/java/Makefile |only
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rJava-0.8-0/rJava/src/java/NotAnArrayException.java |only
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rJava-0.8-0/rJava/src/java/RJavaClassLoader$RJavaObjectInputStream.class |binary
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rJava-0.8-0/rJava/src/java/RJavaClassLoader.class |binary
rJava-0.8-0/rJava/src/java/RJavaClassLoader.java | 887 ++++++----
rJava-0.8-0/rJava/src/java/RJavaComparator.class |only
rJava-0.8-0/rJava/src/java/RJavaComparator.java |only
rJava-0.8-0/rJava/src/java/RJavaImport.class |only
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rJava-0.8-0/rJava/src/java/RJavaTools.class |binary
rJava-0.8-0/rJava/src/java/RJavaTools.java | 635 ++++++-
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rJava-0.8-0/rJava/src/java/TestException.java |only
rJava-0.8-0/rJava/src/otables.c |only
rJava-0.8-0/rJava/src/rJava.c | 165 +
rJava-0.8-0/rJava/src/rJava.h | 52
156 files changed, 4216 insertions(+), 1211 deletions(-)
Author: William H. Asquith
Title: L-moments, Trimmed L-moments, L-comoments, and Many
Distributions
Description: The package implements the statistical theory of L-moments
including L-moment estimation, probability-weighted moment
estimation, parameter estimation for numerous familiar and
not-so-familiar distributions, and L-moment estimation for the
same distributions from the parameters. L-moments are derived
from the expectations of order statistics and are linear with
respect to the probability- weighted moments. L-moments are
directly analogous to the well-known product moments; however,
L-moments have many advantages including unbiasedness,
robustness, and consistency with respect to the product
moments. This package is oriented around the FORTRAN algorithms
of J.R.M. Hosking, and the nomenclature for many of the
functions parallels that of the Hosking library. However,
numerous extensions are made to aid in expand of the breadth
and ease of L-moment application. Much theoretical extension of
L-moment theory has occurred in recent years. E.A.H. Elamir and
A.H. Seheult have developed the trimmed L-moments, which are
implemented in this package. Further, recent developments by
Robert Serfling and Peng Xiao have extended L-moments into
multivariate space; the so-called sample L-comoments are
implemented here. The supported distributions with moment type
shown as L (L-moments) or TL (trimmed L-moments) and additional
support for right-tail censoring ([RC]) include: Cauchy(TL),
Exponential(L), Gamma(L), Generalized Extreme Value(L),
Generalized Lambda(L & TL), Generalized Logistic (L),
Generalized Normal(L), Generalized Pareto(L[RC] & TL),
Gumbel(L), Normal(L), Kappa(L), Pearson Type III(L), Reverse
Gumbel(L[RC]), Wakeby(L), and Weibull(L).
Diff between lmomco versions 0.97.1 dated 2009-07-18 and 0.97.4 dated 2009-10-28
ChangeLog | 11 +++++++++++ DESCRIPTION | 10 +++++----- man/lmomgld.Rd | 4 ++-- man/pdfkap.Rd | 2 +- man/prob2T.Rd | 2 +- man/z.par2cdf.Rd | 8 ++++---- man/z.par2qua.Rd | 8 ++++---- 7 files changed, 28 insertions(+), 17 deletions(-)
Author: Pavel N. Krivitsky
Diff between latentnet versions 2.2 dated 2009-07-18 and 2.2-2 dated 2009-10-28
Title: Latent position and cluster models for statistical networks
Description: A package to fit and simulate latent position and cluster
models for statistical networks.
ChangeLog | 4 ++++
DESCRIPTION | 8 ++++----
man/gof.ergmm.Rd | 2 +-
man/plot.ergmm.Rd | 6 +++---
man/simulate.ergmm.Rd | 2 +-
5 files changed, 13 insertions(+), 9 deletions(-)
Author: Diethelm Wuertz and many others, see the SOURCE file
Title: Rmetrics - Dependence Structures with Copulas
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Diff between fCopulae versions 2100.77 dated 2009-09-28 and 2110.78 dated 2009-10-28
ChangeLog | 1558 ++++++++++++++++++++++++++++++++++++++++++++++++++- DESCRIPTION | 14 NAMESPACE | 9 R/builtin-adapt.R |only man/builtin-adapt.Rd |only src |only 6 files changed, 1570 insertions(+), 11 deletions(-)
Author: Sebastien Beland (UQAM), David Magis (KU Leuven) and Gilles
Raiche (UQAM)
Title: Some traditional methods to detect dichotomous differential item
functioning (DIF) in psychometrics
Description: The difR package contains several traditional methods to
detect DIF in dichotomously scored items. Both uniform and
non-uniform DIF effects can be detected, with methods relying
upon item response models or not. Some methods deal with more
than one focal group.
Diff between difR versions 1.0 dated 2009-09-23 and 1.1 dated 2009-10-28
DESCRIPTION | 10 ++++---- NEWS |only R/itemPar2PL.r | 4 +-- man/LRT.Rd | 2 - man/Logistik.rd | 2 - man/LordChi2.rd | 2 - man/RajuZ.rd | 2 - man/breslowDay.rd | 4 +-- man/contrastMatrix.rd | 2 - man/dichoDif.rd | 16 ++++++------- man/difBD.rd | 9 ++++--- man/difGMH.rd | 9 ++++--- man/difGenLord.rd | 21 ++++++++++------- man/difLRT.rd | 2 - man/difLogistic.rd | 2 - man/difLord.rd | 50 +++++++++++++++++++++++------------------- man/difMH.rd | 2 - man/difRaju.rd | 55 ++++++++++++++++++++++++----------------------- man/difStd.rd | 2 - man/genLordChi2.rd | 2 - man/genMantelHaenszel.rd | 2 - man/itemPar1PL.rd | 6 ++--- man/itemPar2PL.rd | 2 - man/itemPar3PL.rd | 2 - man/itemPar3PLconst.rd | 2 - man/itemParEst.rd | 5 ++-- man/itemRescale.rd | 2 - man/mantelHaenszel.rd | 2 - man/selectDif.rd | 2 - man/stdPDIF.rd | 2 - 30 files changed, 119 insertions(+), 106 deletions(-)
Author: David M. Schruth
Diff between caroline versions 0.1-1 dated 2009-09-07 and 0.1-3 dated 2009-10-28
Title: Generic Functions for R
Description: The caroline package is a collection of functions useful
for various general situations.
caroline-0.1-1/caroline/R/caroline.R |only
caroline-0.1-1/caroline/man/createVariablesFromCommandArgs.Rd |only
caroline-0.1-3/caroline/DESCRIPTION | 8 ++++----
caroline-0.1-3/caroline/R/plots.R |only
caroline-0.1-3/caroline/R/string.R |only
caroline-0.1-3/caroline/R/system.R |only
caroline-0.1-3/caroline/man/cmdArgsToVariables.Rd |only
caroline-0.1-3/caroline/man/m.Rd | 6 +++---
caroline-0.1-3/caroline/man/makeElipseCoords.Rd | 4 ++--
caroline-0.1-3/caroline/man/pies.Rd |only
caroline-0.1-3/caroline/man/plotRA.Rd |only
caroline-0.1-3/caroline/man/tab2df.Rd |only
caroline-0.1-3/caroline/man/trunc.path.Rd | 4 ++--
caroline-0.1-3/caroline/man/violins.Rd |only
14 files changed, 11 insertions(+), 11 deletions(-)
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.25 dated 2009-10-06 and 4.26 dated 2009-10-28
DESCRIPTION | 10 +++++----- R/lmVarImp.R | 3 ++- R/rfe.R | 23 ++++++++++++++--------- R/varImp.R | 4 ---- inst/CHANGES | 8 ++++++++ man/train.Rd | 8 ++++---- 6 files changed, 33 insertions(+), 23 deletions(-)
Author: David Hajage
Title: Export R objects to several markup languages
Description: Coerce R object to asciidoc, txt2tags, sphinx or org
syntax. Package comes with a set of drivers for Sweave.
Diff between ascii versions 0.3.1 dated 2009-10-26 and 0.3.2 dated 2009-10-28
DESCRIPTION | 6 +++--- NAMESPACE | 3 +++ NEWS | 9 +++++++++ R/RweaveOrg.r | 4 ++-- R/RweaveSphinx.r | 4 ++-- R/asciiList.r | 30 ++++++++++++++++++++++++++++++ R/asciiTable.r | 4 ++++ R/show.r | 4 ++-- man/ascii.Rd | 11 +++++++++-- 9 files changed, 64 insertions(+), 11 deletions(-)
Author: Romain Francois
Title: Version of ant specific to R
Description: Version of the ant apache build tool, with a few R
specific tasks to ease use of ant within an R package
Diff between ant versions 0.0-8 dated 2009-09-18 and 0.0-10 dated 2009-10-28
DESCRIPTION | 10 inst/java_src/lib/JRIEngine.jar |binary inst/java_src/lib/REngine.jar |binary inst/java_src/src/org/rproject/ant/AntRMainLoopCallbacks.java | 107 +++------- inst/java_src/src/org/rproject/ant/RTask.java | 5 man/ant-package.Rd | 4 man/ant.Rd | 18 - 7 files changed, 53 insertions(+), 91 deletions(-)
Author: David Scott
Diff between VarianceGamma versions 0.1-2 dated 2009-04-22 and 0.2-1 dated 2009-10-28
Title: The Variance Gamma Distribution
Description: This package provides functions for the variance gamma
distributions. Density, distribution and quantile functions.
Functions for random number generation and fitting of the
variance gamma to data. Also, functions for computing moments
of the variance gamma distribution of any order about any
location. In addition, there are functions for checking the
validity of parameters and to interchange different sets of
parameterizatons for the variance gamma distribution.
VarianceGamma-0.1-2/VarianceGamma/R/vgMomentsAndMode.R |only
VarianceGamma-0.1-2/VarianceGamma/man/vgMomentsAndMode.Rd |only
VarianceGamma-0.2-1/VarianceGamma/ChangeLog | 74 ++++
VarianceGamma-0.2-1/VarianceGamma/DESCRIPTION | 22 -
VarianceGamma-0.2-1/VarianceGamma/NAMESPACE | 10
VarianceGamma-0.2-1/VarianceGamma/R/dvg.R | 211 ++++++--------
VarianceGamma-0.2-1/VarianceGamma/R/vgCalcRange.R | 41 +-
VarianceGamma-0.2-1/VarianceGamma/R/vgChangePars.R | 115 ++++++-
VarianceGamma-0.2-1/VarianceGamma/R/vgCheckPars.R |only
VarianceGamma-0.2-1/VarianceGamma/R/vgFit.R | 9
VarianceGamma-0.2-1/VarianceGamma/R/vgFitStart.R | 3
VarianceGamma-0.2-1/VarianceGamma/R/vgMeanVarMode.R |only
VarianceGamma-0.2-1/VarianceGamma/R/vgMom.R |only
VarianceGamma-0.2-1/VarianceGamma/R/vgPlots.R | 41 +-
VarianceGamma-0.2-1/VarianceGamma/data/vgParam.R | 14
VarianceGamma-0.2-1/VarianceGamma/man/VarianceGamma.Rd | 19 -
VarianceGamma-0.2-1/VarianceGamma/man/summary.vgFit.Rd | 21 -
VarianceGamma-0.2-1/VarianceGamma/man/vgCalcRange.Rd | 4
VarianceGamma-0.2-1/VarianceGamma/man/vgChangePars.Rd | 34 +-
VarianceGamma-0.2-1/VarianceGamma/man/vgCheckPars.Rd |only
VarianceGamma-0.2-1/VarianceGamma/man/vgFit.Rd | 12
VarianceGamma-0.2-1/VarianceGamma/man/vgFitStart.Rd | 6
VarianceGamma-0.2-1/VarianceGamma/man/vgMeanVarMode.Rd |only
VarianceGamma-0.2-1/VarianceGamma/man/vgMom.Rd |only
VarianceGamma-0.2-1/VarianceGamma/man/vgParam.Rd | 70 ++--
VarianceGamma-0.2-1/VarianceGamma/man/vgPlots.Rd | 10
26 files changed, 434 insertions(+), 282 deletions(-)
More information about SkewHyperbolic at CRAN
Permanent link
Author: Simon Urbanek
Diff between Rserve versions 0.5-3 dated 2009-01-26 and 0.6-0 dated 2009-10-28
Title: Binary R server
Description: Rserve acts as a socket server (TCP/IP or local sockets)
which allows binary requests to be sent to R. Every connection
has a separate workspace and working directory. Client-side
implementations are available for popular languages such as
C/C++ and Java, allowing any application to use facilities of R
without the need of linking to R code. Rserve supports remote
connection, user authentication and file transfer. A simple R
client is included in this package as well.
Rserve-0.5-3/Rserve/src/Makefile.win |only
Rserve-0.6-0/Rserve/DESCRIPTION | 27
Rserve-0.6-0/Rserve/INDEX | 3
Rserve-0.6-0/Rserve/NEWS | 46 +
Rserve-0.6-0/Rserve/clients/cxx/Rconnection.cc | 49 +
Rserve-0.6-0/Rserve/clients/cxx/Rconnection.h | 9
Rserve-0.6-0/Rserve/clients/cxx/Rsrv.h | 21
Rserve-0.6-0/Rserve/clients/java-new/JRI |only
Rserve-0.6-0/Rserve/clients/java-new/Makefile | 4
Rserve-0.6-0/Rserve/clients/java-new/REXP.java | 62 +-
Rserve-0.6-0/Rserve/clients/java-new/REXPDouble.java | 5
Rserve-0.6-0/Rserve/clients/java-new/REXPEnvironment.java | 44 +
Rserve-0.6-0/Rserve/clients/java-new/REXPExpressionVector.java | 7
Rserve-0.6-0/Rserve/clients/java-new/REXPFactor.java | 20
Rserve-0.6-0/Rserve/clients/java-new/REXPGenericVector.java | 7
Rserve-0.6-0/Rserve/clients/java-new/REXPList.java | 1
Rserve-0.6-0/Rserve/clients/java-new/REXPLogical.java | 120 +++-
Rserve-0.6-0/Rserve/clients/java-new/REXPRaw.java | 6
Rserve-0.6-0/Rserve/clients/java-new/REXPReference.java | 27
Rserve-0.6-0/Rserve/clients/java-new/REXPString.java | 9
Rserve-0.6-0/Rserve/clients/java-new/REXPSymbol.java | 5
Rserve-0.6-0/Rserve/clients/java-new/REXPUnknown.java | 11
Rserve-0.6-0/Rserve/clients/java-new/REXPVector.java | 6
Rserve-0.6-0/Rserve/clients/java-new/REXPWrapper.java |only
Rserve-0.6-0/Rserve/clients/java-new/REngine.java | 141 ++++
Rserve-0.6-0/Rserve/clients/java-new/REngineCallbacks.java |only
Rserve-0.6-0/Rserve/clients/java-new/REngineConsoleHistoryInterface.java |only
Rserve-0.6-0/Rserve/clients/java-new/REngineEvalException.java |only
Rserve-0.6-0/Rserve/clients/java-new/REngineException.java | 11
Rserve-0.6-0/Rserve/clients/java-new/REngineInputInterface.java |only
Rserve-0.6-0/Rserve/clients/java-new/REngineOutputInterface.java |only
Rserve-0.6-0/Rserve/clients/java-new/REngineStdOutput.java |only
Rserve-0.6-0/Rserve/clients/java-new/REngineUIInterface.java |only
Rserve-0.6-0/Rserve/clients/java-new/RList.java | 26
Rserve-0.6-0/Rserve/clients/java-new/Rserve/RConnection.java | 53 +
Rserve-0.6-0/Rserve/clients/java-new/Rserve/RserveException.java | 11
Rserve-0.6-0/Rserve/clients/java-new/Rserve/package-info.java |only
Rserve-0.6-0/Rserve/clients/java-new/Rserve/protocol/REXPFactory.java | 19
Rserve-0.6-0/Rserve/clients/java-new/Rserve/protocol/RTalk.java | 8
Rserve-0.6-0/Rserve/clients/java-new/Rserve/test/Makefile | 7
Rserve-0.6-0/Rserve/clients/java-new/Rserve/test/test.java | 48 +
Rserve-0.6-0/Rserve/clients/java-new/package-info.java |only
Rserve-0.6-0/Rserve/clients/java-old |only
Rserve-0.6-0/Rserve/configure | 14
Rserve-0.6-0/Rserve/configure.ac | 7
Rserve-0.6-0/Rserve/configure.win |only
Rserve-0.6-0/Rserve/src/Makefile.in | 13
Rserve-0.6-0/Rserve/src/Makevars.win |only
Rserve-0.6-0/Rserve/src/Rserv.c | 285 +++++++++-
Rserve-0.6-0/Rserve/src/Rsrv.h | 21
Rserve-0.6-0/Rserve/src/client/cxx/Rconnection.cc | 49 +
Rserve-0.6-0/Rserve/src/client/cxx/Rconnection.h | 9
Rserve-0.6-0/Rserve/src/client/cxx/Rsrv.h | 21
Rserve-0.6-0/Rserve/src/client/java-new/JRI |only
Rserve-0.6-0/Rserve/src/client/java-new/Makefile | 4
Rserve-0.6-0/Rserve/src/client/java-new/REXP.java | 62 +-
Rserve-0.6-0/Rserve/src/client/java-new/REXPDouble.java | 5
Rserve-0.6-0/Rserve/src/client/java-new/REXPEnvironment.java | 44 +
Rserve-0.6-0/Rserve/src/client/java-new/REXPExpressionVector.java | 7
Rserve-0.6-0/Rserve/src/client/java-new/REXPFactor.java | 20
Rserve-0.6-0/Rserve/src/client/java-new/REXPGenericVector.java | 7
Rserve-0.6-0/Rserve/src/client/java-new/REXPList.java | 1
Rserve-0.6-0/Rserve/src/client/java-new/REXPLogical.java | 120 +++-
Rserve-0.6-0/Rserve/src/client/java-new/REXPRaw.java | 6
Rserve-0.6-0/Rserve/src/client/java-new/REXPReference.java | 27
Rserve-0.6-0/Rserve/src/client/java-new/REXPString.java | 9
Rserve-0.6-0/Rserve/src/client/java-new/REXPSymbol.java | 5
Rserve-0.6-0/Rserve/src/client/java-new/REXPUnknown.java | 11
Rserve-0.6-0/Rserve/src/client/java-new/REXPVector.java | 6
Rserve-0.6-0/Rserve/src/client/java-new/REXPWrapper.java |only
Rserve-0.6-0/Rserve/src/client/java-new/REngine.java | 141 ++++
Rserve-0.6-0/Rserve/src/client/java-new/REngineCallbacks.java |only
Rserve-0.6-0/Rserve/src/client/java-new/REngineConsoleHistoryInterface.java |only
Rserve-0.6-0/Rserve/src/client/java-new/REngineEvalException.java |only
Rserve-0.6-0/Rserve/src/client/java-new/REngineException.java | 11
Rserve-0.6-0/Rserve/src/client/java-new/REngineInputInterface.java |only
Rserve-0.6-0/Rserve/src/client/java-new/REngineOutputInterface.java |only
Rserve-0.6-0/Rserve/src/client/java-new/REngineStdOutput.java |only
Rserve-0.6-0/Rserve/src/client/java-new/REngineUIInterface.java |only
Rserve-0.6-0/Rserve/src/client/java-new/RList.java | 26
Rserve-0.6-0/Rserve/src/client/java-new/Rserve/RConnection.java | 53 +
Rserve-0.6-0/Rserve/src/client/java-new/Rserve/RserveException.java | 11
Rserve-0.6-0/Rserve/src/client/java-new/Rserve/package-info.java |only
Rserve-0.6-0/Rserve/src/client/java-new/Rserve/protocol/REXPFactory.java | 19
Rserve-0.6-0/Rserve/src/client/java-new/Rserve/protocol/RTalk.java | 8
Rserve-0.6-0/Rserve/src/client/java-new/Rserve/test/Makefile | 7
Rserve-0.6-0/Rserve/src/client/java-new/Rserve/test/test.java | 48 +
Rserve-0.6-0/Rserve/src/client/java-new/package-info.java |only
Rserve-0.6-0/Rserve/src/client/java-old |only
Rserve-0.6-0/Rserve/src/winembed.c | 34 -
90 files changed, 1644 insertions(+), 280 deletions(-)
Author: Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer
Title: Visualizing the performance of scoring classifiers.
Description: ROC graphs, sensitivity/specificity curves, lift charts,
and precision/recall plots are popular examples of trade-off
visualizations for specific pairs of performance measures. ROCR
is a flexible tool for creating cutoff-parametrized 2D
performance curves by freely combining two from over 25
performance measures (new performance measures can be added
using a standard interface). Curves from different
cross-validation or bootstrapping runs can be averaged by
different methods, and standard deviations, standard errors or
box plots can be used to visualize the variability across the
runs. The parametrization can be visualized by printing cutoff
values at the corresponding curve positions, or by coloring the
curve according to cutoff. All components of a performance plot
can be quickly adjusted using a flexible parameter dispatching
mechanism. Despite its flexibility, ROCR is easy to use, with
only three commands and reasonable default values for all
optional parameters.
Diff between ROCR versions 1.0-2 dated 2007-01-30 and 1.0-3 dated 2009-10-28
ROCR-1.0-2/ROCR/unittests/runit.ROCR.R |only ROCR-1.0-2/ROCR/unittests/runit.ROCRaux.R |only ROCR-1.0-2/ROCR/unittests/testresults.html |only ROCR-1.0-3/ROCR/CITATION | 13 ++++-- ROCR-1.0-3/ROCR/DESCRIPTION | 43 ++++++++++++----------- ROCR-1.0-3/ROCR/R/performance_measures.R | 2 - ROCR-1.0-3/ROCR/R/zzz.R | 13 ++++++ ROCR-1.0-3/ROCR/demo/ROCR.R | 3 + ROCR-1.0-3/ROCR/man/performance.Rd | 5 +- ROCR-1.0-3/ROCR/unittests/XXXrunit.ROCR.aux.RXXX |only ROCR-1.0-3/ROCR/unittests/runit.consistency.r | 2 - ROCR-1.0-3/ROCR/unittests/testsuite.ROCR.R |only 12 files changed, 51 insertions(+), 30 deletions(-)
Author: Romain Francois, Philippe Grosjean
Title: R bindings for ImageJ
Description: Bindings between R and the ImageJ java based image
processing and Analysis platform
Diff between RImageJ versions 0.0-142 dated 2009-06-24 and 0.1-142 dated 2009-10-28
RImageJ-0.0-142/RImageJ/R/IJ.R |only RImageJ-0.1-142/RImageJ/DESCRIPTION | 18 +++++++++--------- RImageJ-0.1-142/RImageJ/R/ij.r |only RImageJ-0.1-142/RImageJ/R/onLoad.R | 3 +-- RImageJ-0.1-142/RImageJ/man/IJ.Rd | 3 ++- RImageJ-0.1-142/RImageJ/man/RImageJ-package.Rd | 8 ++++---- 6 files changed, 16 insertions(+), 16 deletions(-)
Author: Joern Schulz
Diff between PET versions 0.4.6 dated 2007-04-04 and 0.4.7 dated 2009-10-28
Title: Simulation and Reconstruction of PET Images
Description: This package implements different analytic/direct and
iterative reconstruction methods of Peter Toft. It also offer
the possibility to simulate PET data.
COPYRIGHT | 2 +-
DESCRIPTION | 32 +++++++++++++++++---------------
R/iniPetFifList.r | 6 +++---
R/readData.r | 10 ++--------
R/readIni.r | 14 +++++++-------
R/readSifData.r | 2 +-
R/writeData.r | 10 ++--------
man/PET-package.Rd |only
man/cutMatrix.Rd | 2 +-
man/hough.Rd | 12 +++++++-----
man/iradon.Rd | 8 +++++---
man/iradonIT.Rd | 8 +++++---
man/norm.Rd | 2 +-
man/radon.Rd | 5 +++--
man/readData.Rd | 4 +---
man/writeData.Rd | 4 +---
16 files changed, 57 insertions(+), 64 deletions(-)
Author: Markus Helbig
Diff between JGR versions 1.6-8 dated 2009-09-06 and 1.7-0 dated 2009-10-28
Title: JGR - Java Gui for R
Description: Java GUI for R - cross-platform, universal and unified
Graphical User Interface for R. For full functionality on
Windows and Mac OS X JGR requires a start application which
depends on your OS. This can be downloaded from JGR's website:
http://www.rosuda.org/JGR
DESCRIPTION | 7 +-
NEWS | 13 +++-
R/JGR.R | 61 ++++++++++++++--------
inst/java/JGR.jar |binary
launcher/macosx/JGR_App.xcodeproj/project.pbxproj | 8 +-
launcher/macosx/main.c | 4 -
man/supplements.Rd | 13 +++-
7 files changed, 70 insertions(+), 36 deletions(-)
Author: Matthew K. Lau
Title: Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted
for Unequal Variances and Unequal Sample Sizes
Description: Functions for conducting and plotting Dunnett's modified
Tukey-Kramer pairwise multiple comparison test accounting for
unequal variance and unequal sample sizes.
Diff between DTK versions 2.1 dated 2009-03-05 and 3.0 dated 2009-10-28
DESCRIPTION | 17 +++- R/DTK.plot.R | 24 +++--- R/DTK.test.R | 184 +++++++++++++++++++++++++---------------------------- man/DTK-package.Rd | 6 - man/DTK.test.Rd | 2 5 files changed, 118 insertions(+), 115 deletions(-)
Author: Brandon Whitcher
Diff between DICOM versions 0.12 dated 2005-08-23 and 0.13 dated 2009-10-28
Title: Import medical imaging data using the DICOM Standard
Description: This package provides functions to import and manipulate
medical imaging data via the Digital Imaging and Communications
in Medicine (DICOM) Standard.
DESCRIPTION | 22 ++++---
man/dicom.Rd | 46 ++++++++--------
man/dicom.info.Rd | 70 +++++++++++--------------
man/dicom.separate.Rd | 52 ++++++++----------
man/dicom2analyze.Rd | 61 ++++++++++-----------
man/str2time.Rd | 140 +++++++++++++++++++++++++-------------------------
6 files changed, 196 insertions(+), 195 deletions(-)