Author: Matthew Denwood
Diff between runjags versions 0.9.5-1 dated 2009-10-15 and 0.9.5-2 dated 2009-11-01
Title: Run Bayesian MCMC Models in the BUGS syntax from Within R
Description: A set of functions to allow any user specified model to be
run in JAGS from within R, returning the MCMC chains as R
objects. Includes functions to read external WinBUGS type
textfiles, and allows several ways of automatically specifying
model data from existing R objects or R functions. Also
includes functions to automatically calculate model run length,
autocorrealtion and Gelman Rubin statistic diagnostics for all
models to simplify the process of achieving chain convergence.
Designed for maximum compatibility with WinBUGS syntax,
although minor modification to existing .bug files will be
required. Requires Just Another Gibbs Sampler (JAGS) for most
functions, see: http://www-fis.iarc.fr/~martyn/software/jags/
DESCRIPTION | 8 ++++----
R/read.winbugs.R | 4 ++--
2 files changed, 6 insertions(+), 6 deletions(-)
Author: Alex Couture-Beil
Diff between rjson versions 0.1.7 dated 2009-08-28 and 0.1.8 dated 2009-11-01
Title: JSON for R
Description: Converts R object into JSON objects and vice-versa
DESCRIPTION | 6 +++---
R/json.R | 8 ++++----
inst/doc/json_rpc_server.pdf |binary
3 files changed, 7 insertions(+), 7 deletions(-)
Author: Jeffrey A. Ryan
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial
trading strategies
Diff between quantmod versions 0.3-12 dated 2009-10-03 and 0.3-13 dated 2009-11-01
DESCRIPTION | 8 ++++---- R/OHLC.transformations.R | 8 ++++---- R/addCLV.R | 2 +- R/addChaikin.R | 8 ++++---- R/addEMV.R | 4 ++-- R/addOBV.R | 4 ++-- R/axTicksByTime2.R |only R/newTA.R | 3 ++- man/OHLC.Transformations.Rd | 4 ++++ man/periodReturn.Rd | 2 -- 10 files changed, 23 insertions(+), 20 deletions(-)
Author: Rajarshi Guha
Diff between fingerprint versions 3.1.2 dated 2009-02-23 and 3.2 dated 2009-11-01
Title: Functions to operate on binary fingerprint data
Description: This package contains functions to manipulate binary
fingerprints of arbitrary length. A fingerprint is represented
by an object of S4 class 'fingerprint' which is internally
represented a vector of integers, such that each element
represents the position in the fingerprint that is set to 1.
The bitwise logical functions in R are overridden so that they
can be used directly with 'fingerprint' objects. A number of
distance metrics are also available (many contributed by
Michael Fadock). Fingerprints can be converted to Euclidean
vectors (i.e., points on the unit hypersphere) and can also be
folded using OR. Arbitrary fingerprint formats can be handled
via line handlers. Currently handlers are provided for CDK, MOE
and BCI fingerprint data.
DESCRIPTION | 31 ++++++++++++++++++-------------
inst |only
man/fingerprint.Rd | 3 +--
tests |only
4 files changed, 19 insertions(+), 15 deletions(-)
Author: A.I. McLeod and Changjiang Xu
Title: Best Subset GLM
Description: Best subset glm using AIC, BIC, EBIC, BICq or
Cross-Validation. For the normal case, the 'leaps' is used.
Otherwise, a slower exhaustive search. The 'xtable' package is
needed for vignette 'SimExperimentBICq.Rnw' accompanying this
package.
Diff between bestglm versions 0.14 dated 2009-10-19 and 0.20 dated 2009-11-01
bestglm-0.14/bestglm/R/oneSdRule.R |only bestglm-0.20/bestglm/DESCRIPTION | 8 bestglm-0.20/bestglm/R/CVHTF.R | 15 bestglm-0.20/bestglm/R/bestglm.R | 4 bestglm-0.20/bestglm/R/oneSd.R |only bestglm-0.20/bestglm/inst/doc/Rplots.pdf | 146 bestglm-0.20/bestglm/inst/doc/SimExperimentBICq.pdf | 252 - bestglm-0.20/bestglm/inst/doc/bestglm.Rnw | 210 - bestglm-0.20/bestglm/inst/doc/bestglm.pdf | 4111 +++++++++----------- bestglm-0.20/bestglm/man/CVDH.Rd | 7 bestglm-0.20/bestglm/man/CVHTF.Rd | 185 bestglm-0.20/bestglm/man/CVd.Rd | 150 bestglm-0.20/bestglm/man/Fires.Rd | 4 bestglm-0.20/bestglm/man/bestglm-package.Rd | 15 bestglm-0.20/bestglm/man/bestglm.Rd | 22 bestglm-0.20/bestglm/man/oneSdRule.Rd | 3 16 files changed, 2475 insertions(+), 2657 deletions(-)
Author: R by Martin Schlather
Diff between SoPhy versions 1.0.36 dated 2009-01-14 and 1.0.39 dated 2009-11-01
Title: Soil Physics Tools
Description: SWMS_2D interface
DESCRIPTION | 16 +++++++++++-----
man/create.stones.Rd | 2 +-
man/plotRGB.Rd | 2 +-
man/plotWater.Rd | 2 +-
man/quader.Rd | 3 ++-
man/xswms2d.Rd | 4 ++--
src/Makevars | 2 +-
7 files changed, 19 insertions(+), 12 deletions(-)
Author: Erin Hodgess
Diff between RcmdrPlugin.qual versions 0.1.0 dated 2009-08-21 and 0.3.0 dated 2009-11-01
More information about RcmdrPlugin.qual at CRAN
Title: Rcmdr plugin for quality control course
Description: This package provides an Rcmdr "plug-in" based on the
Quality control class Stat 4300
DESCRIPTION | 8 +--
R/RcmdrPlugin.qual.R | 87 ++++++++++++++++++++++++++++++++++++++-
inst/etc/menus.txt | 35 ++++++++-------
man/RcmdrPlugin.qual-internal.Rd | 7 ++-
4 files changed, 114 insertions(+), 23 deletions(-)
Permanent link
Author: Martin Schlather
Diff between RandomFields versions 1.3.40 dated 2009-07-01 and 1.3.41 dated 2009-11-01
Title: Simulation and Analysis of Random Fields
Description: Simulation of Gaussian and extreme value random fields;
conditional simulation; kriging
DESCRIPTION | 6 +++---
man/RFparameters.Rd | 3 ++-
2 files changed, 5 insertions(+), 4 deletions(-)
Author: Martin Schlather
Diff between MarkedPointProcess versions 0.2.11 dated 2009-06-29 and 0.2.13 dated 2009-11-01
More information about MarkedPointProcess at CRAN
Title: Analysis of Marks of Marked Point Processes
Description: Non-parametric Analysis of the Marks of Marked Point
Processes
DESCRIPTION | 8 ++++----
NAMESPACE | 1 -
R/srd.R | 12 ++++++++----
man/rfm.test.Rd | 2 +-
4 files changed, 13 insertions(+), 10 deletions(-)
Permanent link
Author: Steve Su
Title: Fitting Single and Mixture of Generalised Lambda Distributions
(RS and FMKL) using Discretised and Maximum Likelihood Methods
Description: The fitting algorithms considered in this package have two
major objectives. One is to provide a smoothing device to fit
distributions to data using the weight and unweighted
discretised approach based on the bin width of the histogram.
The other is to provide a definitive fit to the data set using
the maximum likelihood estimation. Diagnostics on goodness of
fit can be done via qqplots, KS-resample tests and comparing
mean, variance, skewness and kurtosis of the data with the
fitted distribution.
Diff between GLDEX versions 1.0.3.2 dated 2009-10-11 and 1.0.3.3 dated 2009-11-01
DESCRIPTION | 8 ++++---- R/fun.fmkl0.R | 5 +++-- man/GLDEX.package.Rd | 4 ++-- 3 files changed, 9 insertions(+), 8 deletions(-)
Author: Sundar Dorai-Raj and Spencer Graves
Title: R companion to "Curve and Surface Fitting with Splines"
Description: This package provides a wrapper to the FITPACK routines
written by Paul Dierckx. The original Fortran is available from
http://www.netlib.org/dierckx
Diff between DierckxSpline versions 1.1-3 dated 2009-04-16 and 1.1-4 dated 2009-11-01
DESCRIPTION | 9 ++++----- man/panel.dierckx.Rd | 6 +++--- 2 files changed, 7 insertions(+), 8 deletions(-)
More information about stockPortfolio at CRAN
Permanent link
Author: Holger Schwender, Arno Fritsch
Title: Analysis of High-Dimensional Categorical Data such as SNP Data
Description: Tools for the analysis of high-dimensional data
developed/implemented at the group "Statistical Complexity
Reduction In Molecular Epidemiology" (SCRIME). Main focus is on
SNP data. But most of the functions can also be applied to
other types of categorical data.
Diff between scrime versions 1.1.7 dated 2009-10-14 and 1.1.9 dated 2009-11-01
DESCRIPTION | 8 ++++---- R/recodeCount.R | 10 +++++----- inst/CHANGES | 12 ++++++++++++ man/rowHWEs.Rd | 5 ++--- 4 files changed, 23 insertions(+), 12 deletions(-)
Author: Rajarshi Guha
Diff between rcdklibs versions 1.2.2 dated 2009-10-29 and 1.2.3 dated 2009-11-01
Title: rcdklib - CDK libraries packaged for R
Description: This package provides the CDK libraries for use in the R
environment. Given the size of the library itself, this package
is not expected to change very frequently. To make use of the
CDK within R, it is suggested that you use the rcdk package.
Note that it is possible to directly interact with the CDK
using rJava. However rcdk exposes functionality in a more
idiomatic way
DESCRIPTION | 8 ++++----
inst/cont/cdk.jar |binary
2 files changed, 4 insertions(+), 4 deletions(-)
Author: Rajarshi Guha
Diff between rcdk versions 2.9.4 dated 2009-08-24 and 2.9.6 dated 2009-11-01
Title: rcdk - Interface to the CDK Libraries
Description: This package allows the user to access functionality in
the CDK, a Java framework for cheminformatics. This allows the
user to load molecules, evaluate fingerprints, calculate
molecular descriptors and so on. In addition the CDK API allows
the user to view structures in 2D.
DESCRIPTION | 8
R/atoms.R | 49 +-
R/bonds.R | 23 -
R/formula.R | 271 +++++++------
R/props.R | 45 +-
R/rcdk.R | 4
R/visual.R | 4
inst/cont/rcdk.jar |binary
inst/doc/rcdk.pdf | 928 +++++++++++++++++++++++------------------------
man/atomcontainer.Rd | 2
man/atoms.Rd | 2
man/evalatomicdesc.Rd | 2
man/evaldesc.Rd | 2
man/getatomdescnames.Rd | 2
man/getatoms.Rd | 2
man/getbonds.Rd | 2
man/getconatom.Rd | 2
man/getdesccat.Rd | 2
man/getdescnames.Rd | 2
man/getfp.Rd | 2
man/gethcount.Rd | 2
man/getisotopepattern.Rd | 2
man/getproperty.Rd | 2
man/getprops.Rd | 2
man/getsmiles.Rd | 2
man/getsmilesparser.Rd | 2
man/gettotalcharge.Rd | 2
man/props.Rd | 2
man/removehydrogens.Rd | 2
man/removeproperty.Rd | 2
man/setchargeformula.Rd | 2
man/setproperty.Rd | 2
man/viewmol2d.Rd | 2
man/viewtable.Rd | 2
man/writemols.Rd | 2
35 files changed, 731 insertions(+), 653 deletions(-)
Author: Simon Urbanek
Diff between rJava versions 0.8-0 dated 2009-10-28 and 0.8-1 dated 2009-11-01
Title: Low-level R to Java interface
Description: Low-level interface to Java VM very much like .C/.Call and
friends. Allows creation of objects, calling methods and
accessing fields.
DESCRIPTION | 4 +-
NEWS | 11 +++++
R/arrays.R | 3 +
R/call.R | 4 +-
inst/javadoc/ArrayDimensionException.html | 2 -
inst/javadoc/ArrayWrapper.html | 2 -
inst/javadoc/ArrayWrapper_Test.html | 2 -
inst/javadoc/FlatException.html | 2 -
inst/javadoc/NotAnArrayException.html | 2 -
inst/javadoc/NotComparableException.html | 2 -
inst/javadoc/ObjectArrayException.html | 2 -
inst/javadoc/PrimitiveArrayException.html | 2 -
inst/javadoc/RJavaArrayIterator.html | 2 -
inst/javadoc/RJavaArrayTools.ArrayDimensionMismatchException.html | 2 -
inst/javadoc/RJavaArrayTools.html | 2 -
inst/javadoc/RJavaArrayTools_Test.html | 2 -
inst/javadoc/RJavaClassLoader.html | 2 -
inst/javadoc/RJavaComparator.html | 2 -
inst/javadoc/RJavaImport.html | 2 -
inst/javadoc/RJavaTools.html | 2 -
inst/javadoc/RJavaTools_Test.DummyNonStaticClass.html | 2 -
inst/javadoc/RJavaTools_Test.TestException.html | 2 -
inst/javadoc/RJavaTools_Test.html | 2 -
inst/javadoc/RectangularArrayBuilder.html | 2 -
inst/javadoc/RectangularArrayBuilder_Test.html | 2 -
inst/javadoc/RectangularArrayExamples.html | 2 -
inst/javadoc/RectangularArraySummary.html | 2 -
inst/javadoc/TestException.html | 2 -
inst/javadoc/allclasses-frame.html | 2 -
inst/javadoc/allclasses-noframe.html | 2 -
inst/javadoc/constant-values.html | 2 -
inst/javadoc/deprecated-list.html | 2 -
inst/javadoc/help-doc.html | 2 -
inst/javadoc/index-all.html | 2 -
inst/javadoc/index.html | 2 -
inst/javadoc/overview-tree.html | 2 -
inst/javadoc/package-frame.html | 2 -
inst/javadoc/package-summary.html | 2 -
inst/javadoc/package-tree.html | 2 -
inst/javadoc/serialized-form.html | 2 -
man/jcall.Rd | 2 -
man/jrectRef-class.Rd | 4 +-
src/otables.c | 2 +
src/rJava.c | 19 ++++++++++
src/rJava.h | 2 -
45 files changed, 78 insertions(+), 45 deletions(-)
Author: Nicolai Meinshausen
Title: Node Harvest for regression and classification
Description: Node harvest is a simple interpretable tree-like estimator
for high-dimensional regression and classification. A few nodes
are selected from an initially large ensemble of nodes, each
associated with a positive weight. New observations can fall
into one or several nodes and predictions are the weighted
average response across all these groups. The package offers
visualization of the estimator. Predictions can return the
nodes a new observation fell into, along with the mean response
of training observations in each node, offering a simple
explanation of the prediction.
Diff between nodeHarvest versions 0.1 dated 2009-10-12 and 0.2 dated 2009-11-01
DESCRIPTION | 10 +++++----- R/makeRules.R | 8 +++++--- R/nodeHarvest.R | 8 ++++---- man/nodeHarvest.Rd | 4 ++++ man/plot.nodeHarvest.Rd | 5 +++-- man/predict.nodeHarvest.Rd | 2 +- 6 files changed, 22 insertions(+), 15 deletions(-)
Author: John Verzani
Title: Toolkit implementation of the gWidgets API for use with web
pages
Description: Port of the gWidgets API to www using a local server or
RApache (http://biostat.mc.vanderbilt.edu/rapache/index.html)
to link R with a web page, The Ext JavaScript libararies are
used to create and manipulate widgets. (www.extjs.com)
Diff between gWidgetsWWW versions 0.0-11 dated 2009-08-23 and 0.0-12 dated 2009-11-01
gWidgetsWWW-0.0-11/gWidgetsWWW/inst/doc/gWidgetsWWW.pdf.mine |only gWidgetsWWW-0.0-11/gWidgetsWWW/inst/doc/gWidgetsWWW.pdf.r100 |only gWidgetsWWW-0.0-11/gWidgetsWWW/inst/doc/gWidgetsWWW.pdf.r101 |only gWidgetsWWW-0.0-11/gWidgetsWWW/inst/test-ghtml.R |only gWidgetsWWW-0.0-11/gWidgetsWWW/inst/test-ghtml.html |only gWidgetsWWW-0.0-12/gWidgetsWWW/ChangeLog |only gWidgetsWWW-0.0-12/gWidgetsWWW/DESCRIPTION | 16 gWidgetsWWW-0.0-12/gWidgetsWWW/NEWS | 9 gWidgetsWWW-0.0-12/gWidgetsWWW/R/LocalVersion.R | 4 gWidgetsWWW-0.0-12/gWidgetsWWW/R/gslider.R | 3 gWidgetsWWW-0.0-12/gWidgetsWWW/inst/doc/gWidgetsWWW.pdf | 260 +++++------ gWidgetsWWW-0.0-12/gWidgetsWWW/man/gWidgetsWWW-package.Rd | 4 12 files changed, 159 insertions(+), 137 deletions(-)