Author: Tom Kincaid
Diff between spsurvey versions 2.0 dated 2008-06-20 and 2.1 dated 2009-11-03
Title: Spatial Survey Design and Analysis
Description: This group of functions implements algorithms required for
design and analysis of probability surveys such as those
utilized by the U.S. Environmental Protection Agency's
Environmental Monitoring and Assessment Program (EMAP).
spsurvey-2.0/spsurvey/inst/doc/00Index.html |only
spsurvey-2.0/spsurvey/spsurvey_2.0.zip |only
spsurvey-2.1/spsurvey/DESCRIPTION | 40 ++---
spsurvey-2.1/spsurvey/INDEX | 9 -
spsurvey-2.1/spsurvey/R/albersgeod.r | 79 +++++-----
spsurvey-2.1/spsurvey/R/cat.analysis.s | 5
spsurvey-2.1/spsurvey/R/category.est.s | 3
spsurvey-2.1/spsurvey/R/cdf.test.s | 8 -
spsurvey-2.1/spsurvey/R/cont.analysis.s | 5
spsurvey-2.1/spsurvey/R/cont.cdfplot.s | 7
spsurvey-2.1/spsurvey/R/cont.cdftest.s | 9 -
spsurvey-2.1/spsurvey/R/dframe.check.s | 186 +++++++++++++------------
spsurvey-2.1/spsurvey/R/dsgnsum.r | 117 ++++++++++++---
spsurvey-2.1/spsurvey/R/framesum.r | 3
spsurvey-2.1/spsurvey/R/geodalbers.r |only
spsurvey-2.1/spsurvey/R/grts.r | 13 -
spsurvey-2.1/spsurvey/R/input.check.s | 70 +++------
spsurvey-2.1/spsurvey/R/onLoad.r | 2
spsurvey-2.1/spsurvey/R/read.dbf.r | 11 +
spsurvey-2.1/spsurvey/R/read.shape.r | 11 +
spsurvey-2.1/spsurvey/R/relrisk.analysis.s | 15 +-
spsurvey-2.1/spsurvey/R/spsurvey.analysis.s | 66 ++++----
spsurvey-2.1/spsurvey/R/total.est.s | 1
spsurvey-2.1/spsurvey/R/total.var.s | 3
spsurvey-2.1/spsurvey/R/write.dbf.r |only
spsurvey-2.1/spsurvey/data/eco_l3_ut.s | 10 -
spsurvey-2.1/spsurvey/data/luck-ash.s | 12 -
spsurvey-2.1/spsurvey/data/reg1_lakes.s | 14 -
spsurvey-2.1/spsurvey/demo/Area.R | 2
spsurvey-2.1/spsurvey/demo/Finite.R | 2
spsurvey-2.1/spsurvey/demo/Linear.R | 2
spsurvey-2.1/spsurvey/inst/doc/Area.Rnw |only
spsurvey-2.1/spsurvey/inst/doc/Area.pdf |only
spsurvey-2.1/spsurvey/inst/doc/CHANGES.pdf |binary
spsurvey-2.1/spsurvey/inst/doc/Finite.Rnw |only
spsurvey-2.1/spsurvey/inst/doc/Finite.pdf |only
spsurvey-2.1/spsurvey/inst/doc/Linear.Rnw |only
spsurvey-2.1/spsurvey/inst/doc/Linear.pdf |only
spsurvey-2.1/spsurvey/inst/doc/README.pdf |binary
spsurvey-2.1/spsurvey/inst/doc/Rplots.pdf |only
spsurvey-2.1/spsurvey/inst/doc/UserGuide.pdf |binary
spsurvey-2.1/spsurvey/inst/doc/eco_l3_ut.dbf |only
spsurvey-2.1/spsurvey/inst/doc/eco_l3_ut.shp |only
spsurvey-2.1/spsurvey/inst/doc/eco_l3_ut.shx |only
spsurvey-2.1/spsurvey/inst/doc/luck_ash.dbf |only
spsurvey-2.1/spsurvey/inst/doc/luck_ash.shp |only
spsurvey-2.1/spsurvey/inst/doc/luck_ash.shx |only
spsurvey-2.1/spsurvey/inst/doc/reg1_lakes.dbf |only
spsurvey-2.1/spsurvey/inst/doc/reg1_lakes.shp |only
spsurvey-2.1/spsurvey/inst/doc/reg1_lakes.shx |only
spsurvey-2.1/spsurvey/man/albersgeod.Rd | 12 -
spsurvey-2.1/spsurvey/man/cdf.decon.Rd | 2
spsurvey-2.1/spsurvey/man/cdf.est.Rd | 2
spsurvey-2.1/spsurvey/man/cdf.test.Rd | 3
spsurvey-2.1/spsurvey/man/cont.analysis.Rd | 2
spsurvey-2.1/spsurvey/man/framesum.Rd | 3
spsurvey-2.1/spsurvey/man/geodalbers.Rd |only
spsurvey-2.1/spsurvey/man/grts.Rd | 9 -
spsurvey-2.1/spsurvey/man/luck.ash.Rd | 2
spsurvey-2.1/spsurvey/man/spsurvey-internal.Rd | 3
spsurvey-2.1/spsurvey/man/spsurvey.analysis.Rd | 4
spsurvey-2.1/spsurvey/man/write.dbf.Rd |only
spsurvey-2.1/spsurvey/src/init.c | 3
spsurvey-2.1/spsurvey/src/spsurvey.h | 1
64 files changed, 429 insertions(+), 322 deletions(-)
Author: Daniel Adler
Diff between ff versions 2.0.1 dated 2009-04-16 and 2.1-0 dated 2009-11-03
Title: memory-efficient storage of large data on disk and fast access
functions
Description: The ff package provides data structures that are stored on
disk but behave (almost) as if they were in RAM by
transparently mapping only a section (pagesize) in main memory
- the effective virtual memory consumption per ff object. ff
supports R's standard atomic data types 'double', 'logical',
'raw' and 'integer' and non-standard atomic types boolean (1
bit), quad (2 bit unsigned), nibble (4 bit unsigned), byte (1
byte signed with NAs), ubyte (1 byte unsigned), short (2 byte
signed with NAs), ushort (2 byte unsigned), single (4 byte
float with NAs). For example 'quad' allows efficient storage of
genomic data as an 'A','T','G','C' factor. The unsigned types
support 'circular' arithmetic. There is also support for
close-to-atomic types 'factor', 'ordered', 'POSIXct', 'Date'
and custom close-to-atomic types. ff not only has native
C-support for vectors, matrices and arrays with flexible
dimorder (major column-order, major row-order and
generalizations for arrays). There is also a ffdf class not
unlike data.frames and import/export filters for csv files. ff
objects store raw data in binary flat files in native encoding,
and complement this with metadata stored in R as physical and
virtual attributes. ff objects have well-defined hybrid copying
semantics, which gives rise to certain performance improvements
through virtualization. ff objects can be stored and reopened
across R sessions. ff files can be shared by multiple ff R
objects (using different data en/de-coding schemes) in the same
process or from multiple R processes to exploit parallelism. A
wide choice of finalizer options allows to work with
'permanent' files as well as creating/removing 'temporary' ff
files completely transparent to the user. On certain
OS/Filesystem combinations, creating the ff files works without
notable delay thanks to using sparse file allocation. Several
access optimization techniques such as Hybrid Index
Preprocessing and Virtualization are implemented to achieve
good performance even with large datasets, for example virtual
matrix transpose without touching a single byte on disk.
Further, to reduce disk I/O, 'logicals' and non-standard data
types get stored native and compact on binary flat files i.e.
logicals take up exactly 2 bits to represent TRUE, FALSE and
NA. Beyond basic access functions, the ff package also provides
compatibility functions that facilitate writing code for ff and
ram objects and support for batch processing on ff objects
(e.g. as.ram, as.ff, ffapply). ff interfaces closely with
functionality from package 'bit': chunked looping, fast bit
operations and coercions between different objects that can
store subscript information ('bit', 'bitwhich', ff 'boolean',
ri range index, hi hybrid index). This allows to work
interactively with selections of large datasets and quickly
modify selection criteria. Further high-performance
enhancements can be made available upon request.
ff-2.0.1/ff/ANNOUNCEMENT.txt |only
ff-2.0.1/ff/man/bbatch.rd |only
ff-2.0.1/ff/man/intrle.rd |only
ff-2.0.1/ff/man/physical.rd |only
ff-2.0.1/ff/man/repfromto.rd |only
ff-2.0.1/ff/man/rlepack.rd |only
ff-2.1-0/ff/ANNOUNCEMENT-2.0.txt |only
ff-2.1-0/ff/ANNOUNCEMENT-2.1.txt |only
ff-2.1-0/ff/DESCRIPTION | 108 +-
ff-2.1-0/ff/LICENSE | 3
ff-2.1-0/ff/NAMESPACE | 260 ++++-
ff-2.1-0/ff/NEWS |only
ff-2.1-0/ff/R/array.R | 70 -
ff-2.1-0/ff/R/as.ff.R | 6
ff-2.1-0/ff/R/ff.R | 1283 ++++++++++++++++++--------
ff-2.1-0/ff/R/ffapply.R | 143 --
ff-2.1-0/ff/R/ffbit.R |only
ff-2.1-0/ff/R/ffcsv.R |only
ff-2.1-0/ff/R/ffdf.R |only
ff-2.1-0/ff/R/fffactor.R |only
ff-2.1-0/ff/R/ffreturn.R | 4
ff-2.1-0/ff/R/fileresize.R |only
ff-2.1-0/ff/R/fileutil.R |only
ff-2.1-0/ff/R/generics.R | 112 ++
ff-2.1-0/ff/R/hi.R | 570 +++++------
ff-2.1-0/ff/R/util.R | 66 +
ff-2.1-0/ff/R/vmode.R | 51 -
ff-2.1-0/ff/R/vt.R | 8
ff-2.1-0/ff/R/zzz.R | 34
ff-2.1-0/ff/man/Extract.ff.rd | 11
ff-2.1-0/ff/man/Extract.ffdf.rd |only
ff-2.1-0/ff/man/Forbidden_ffdf.rd |only
ff-2.1-0/ff/man/Internal_ffdf.rd |only
ff-2.1-0/ff/man/LimWarn.rd | 4
ff-2.1-0/ff/man/add.rd | 2
ff-2.1-0/ff/man/as.ff.bit.rd |only
ff-2.1-0/ff/man/as.ff.rd | 6
ff-2.1-0/ff/man/as.ffdf.rd |only
ff-2.1-0/ff/man/as.hi.rd | 26
ff-2.1-0/ff/man/as.integer.hi.rd | 6
ff-2.1-0/ff/man/chunk.ffdf.rd |only
ff-2.1-0/ff/man/clone.ffdf.rd |only
ff-2.1-0/ff/man/clone.rd | 48
ff-2.1-0/ff/man/close.ff.rd | 6
ff-2.1-0/ff/man/delete.rd | 14
ff-2.1-0/ff/man/dim.ff.rd | 42
ff-2.1-0/ff/man/dimnames.ff_array.rd | 5
ff-2.1-0/ff/man/dimnames.ffdf.rd |only
ff-2.1-0/ff/man/ff.rd | 62 -
ff-2.1-0/ff/man/ffapply.rd | 16
ff-2.1-0/ff/man/ffconform.rd | 2
ff-2.1-0/ff/man/ffdf.rd |only
ff-2.1-0/ff/man/ffxtensions.rd | 5
ff-2.1-0/ff/man/file.resize.rd |only
ff-2.1-0/ff/man/filename.rd | 59 +
ff-2.1-0/ff/man/finalize.rd |only
ff-2.1-0/ff/man/finalizer.rd |only
ff-2.1-0/ff/man/geterror.ff.rd | 3
ff-2.1-0/ff/man/getset.ff.rd | 3
ff-2.1-0/ff/man/hi.rd | 14
ff-2.1-0/ff/man/hiparse.rd | 6
ff-2.1-0/ff/man/is.ff.rd | 2
ff-2.1-0/ff/man/is.ffdf.rd |only
ff-2.1-0/ff/man/is.open.rd | 15
ff-2.1-0/ff/man/is.readonly.rd | 5
ff-2.1-0/ff/man/is.sorted.rd | 8
ff-2.1-0/ff/man/length.ff.rd | 21
ff-2.1-0/ff/man/length.ffdf.rd |only
ff-2.1-0/ff/man/length.hi.rd | 18
ff-2.1-0/ff/man/levels.ff.rd | 10
ff-2.1-0/ff/man/maxlength.rd | 3
ff-2.1-0/ff/man/na.count.rd | 5
ff-2.1-0/ff/man/names.ff.rd | 5
ff-2.1-0/ff/man/nrowAssign.rd |only
ff-2.1-0/ff/man/open.ff.rd | 14
ff-2.1-0/ff/man/physical.ff.rd |only
ff-2.1-0/ff/man/physical.ffdf.rd |only
ff-2.1-0/ff/man/print.ff.rd | 15
ff-2.1-0/ff/man/ramattribs.rd | 5
ff-2.1-0/ff/man/read.table.ffdf.rd |only
ff-2.1-0/ff/man/readwrite.ff.rd | 3
ff-2.1-0/ff/man/repnam.rd |only
ff-2.1-0/ff/man/sortLevels.rd |only
ff-2.1-0/ff/man/splitPathFile.rd |only
ff-2.1-0/ff/man/swap.rd | 5
ff-2.1-0/ff/man/update.ff.rd | 37
ff-2.1-0/ff/man/vecprint.rd | 2
ff-2.1-0/ff/man/vmode.ffdf.rd |only
ff-2.1-0/ff/man/vmode.rd | 3
ff-2.1-0/ff/man/vt.rd | 8
ff-2.1-0/ff/man/vw.rd | 18
ff-2.1-0/ff/man/write.table.ffdf.rd |only
ff-2.1-0/ff/prebuild.sh | 2
ff-2.1-0/ff/src/Array.hpp | 88 -
ff-2.1-0/ff/src/FSInfo.hpp | 2
ff-2.1-0/ff/src/FSInfo_win32.cpp | 4
ff-2.1-0/ff/src/MMapFileMapping.cpp | 28
ff-2.1-0/ff/src/MMapFileMapping.hpp | 12
ff-2.1-0/ff/src/Win32FileMapping.cpp | 46
ff-2.1-0/ff/src/Win32FileMapping.hpp | 38
ff-2.1-0/ff/src/config.h | 7
ff-2.1-0/ff/src/r_ff.c | 149 ---
ff-2.1-0/ff/src/r_ff.h | 3
ff-2.1-0/ff/src/r_ff_makevmodes.h | 26
ff-2.1-0/ff/src/r_file_resize.cpp |only
ff-2.1-0/ff/src/r_file_resize.h |only
ff-2.1-0/ff/src/utk_file_allocate_fseek.cpp | 8
ff-2.1-0/ff/src/utk_file_allocate_fseek.hpp | 2
ff-2.1-0/ff/src/utk_file_resize.cpp |only
ff-2.1-0/ff/src/utk_file_resize.hpp |only
ff-2.1-0/ff/src/utk_file_resize_ftruncate.hpp |only
ff-2.1-0/ff/src/utk_file_resize_win32.hpp |only
112 files changed, 2293 insertions(+), 1382 deletions(-)
Author: Henrik Bengtsson
Diff between aroma.core versions 1.2.0 dated 2009-09-10 and 1.3.1 dated 2009-11-03
Title: Support package for aroma.affymetrix et al.
Description: This package is a private support package for
aroma.affymetrix et al. The methods and classes of this
package are independent of platform. Its API is in alpha and
beta stage.
aroma.core-1.2.0/aroma.core/R/Interface.R |only
aroma.core-1.2.0/aroma.core/man/Interface.Rd |only
aroma.core-1.3.1/aroma.core/DESCRIPTION | 24 ++++-----
aroma.core-1.3.1/aroma.core/R/AromaCellPositionFile.R | 5 +
aroma.core-1.3.1/aroma.core/R/AromaCellSequenceFile.R | 4 +
aroma.core-1.3.1/aroma.core/R/AromaTransform.R | 4 -
aroma.core-1.3.1/aroma.core/R/AromaUgpFile.R | 4 +
aroma.core-1.3.1/aroma.core/R/AromaUnitCallSet.R | 4 -
aroma.core-1.3.1/aroma.core/R/AromaUnitFracBCnBinarySet.R | 2
aroma.core-1.3.1/aroma.core/R/AromaUnitFracBCnBinarySet.exportFracBDiffSet.R | 2
aroma.core-1.3.1/aroma.core/R/AromaUnitGenotypeCallSet.R | 6 +-
aroma.core-1.3.1/aroma.core/R/AromaUnitSignalBinaryFile.R | 5 +
aroma.core-1.3.1/aroma.core/R/AromaUnitSignalBinarySet.R | 2
aroma.core-1.3.1/aroma.core/R/AromaUnitTotalCnBinarySet.R | 3 -
aroma.core-1.3.1/aroma.core/R/AromaUnitTotalCnBinarySet.exportTotalCnRatioSet.R | 8 ++-
aroma.core-1.3.1/aroma.core/R/RawGenomicSignals.R | 11 ++++
aroma.core-1.3.1/aroma.core/R/RawGenomicSignals.segmentByHaarSeg.R | 3 -
aroma.core-1.3.1/aroma.core/R/SampleAnnotationFile.R | 7 ++
aroma.core-1.3.1/aroma.core/R/TextUnitNamesFile.R | 6 ++
aroma.core-1.3.1/aroma.core/R/UnitAnnotationDataFile.R | 2
aroma.core-1.3.1/aroma.core/R/fitGenotypeCone.matrix.R | 7 +-
aroma.core-1.3.1/aroma.core/R/fitMultiDimensionalCone.matrix.R | 5 +
aroma.core-1.3.1/aroma.core/incl/999.missingdocs.txt | 18 +++++-
aroma.core-1.3.1/aroma.core/incl/RawGenomicSignals.SEG.Rex | 24 +++++----
aroma.core-1.3.1/aroma.core/inst/NEWS | 26 ++++++++++
aroma.core-1.3.1/aroma.core/man/AromaCellTabularBinaryFile.Rd | 19 ++++---
aroma.core-1.3.1/aroma.core/man/AromaMicroarrayDataFile.Rd | 13 +++--
aroma.core-1.3.1/aroma.core/man/AromaMicroarrayDataSet.Rd | 11 +++-
aroma.core-1.3.1/aroma.core/man/AromaMicroarrayTabularBinaryFile.Rd | 17 ++++--
aroma.core-1.3.1/aroma.core/man/AromaTabularBinaryFile.Rd | 15 +++--
aroma.core-1.3.1/aroma.core/man/AromaTabularBinarySet.Rd | 13 +++--
aroma.core-1.3.1/aroma.core/man/AromaUnitCallFile.Rd | 21 +++++---
aroma.core-1.3.1/aroma.core/man/AromaUnitCallSet.Rd | 19 ++++---
aroma.core-1.3.1/aroma.core/man/AromaUnitFracBCnBinaryFile.Rd | 21 +++++---
aroma.core-1.3.1/aroma.core/man/AromaUnitFracBCnBinarySet.Rd | 17 ++++--
aroma.core-1.3.1/aroma.core/man/AromaUnitGenotypeCallFile.Rd | 23 +++++---
aroma.core-1.3.1/aroma.core/man/AromaUnitGenotypeCallSet.Rd | 23 +++++---
aroma.core-1.3.1/aroma.core/man/AromaUnitSignalBinaryFile.Rd | 17 ++++--
aroma.core-1.3.1/aroma.core/man/AromaUnitSignalBinarySet.Rd | 15 +++--
aroma.core-1.3.1/aroma.core/man/AromaUnitTabularBinaryFile.Rd | 19 ++++---
aroma.core-1.3.1/aroma.core/man/AromaUnitTotalCnBinaryFile.Rd | 21 +++++---
aroma.core-1.3.1/aroma.core/man/AromaUnitTotalCnBinarySet.Rd | 17 ++++--
aroma.core-1.3.1/aroma.core/man/AromaUnitTypesFile.Rd | 25 +++++----
aroma.core-1.3.1/aroma.core/man/Non-documented_objects.Rd | 14 +++--
aroma.core-1.3.1/aroma.core/man/RawAlleleBFractions.Rd | 2
aroma.core-1.3.1/aroma.core/man/RawCopyNumbers.Rd | 2
aroma.core-1.3.1/aroma.core/man/RawGenomicSignals.Rd | 1
aroma.core-1.3.1/aroma.core/man/RawMirroredAlleleBFractions.Rd | 2
aroma.core-1.3.1/aroma.core/man/RawSequenceReads.Rd | 2
aroma.core-1.3.1/aroma.core/man/SegmentedAlleleBFractions.Rd | 2
aroma.core-1.3.1/aroma.core/man/SegmentedCopyNumbers.Rd | 2
aroma.core-1.3.1/aroma.core/man/SegmentedGenomicSignalsInterface.Rd | 6 +-
aroma.core-1.3.1/aroma.core/man/UnitAnnotationDataFile.Rd | 8 +--
aroma.core-1.3.1/aroma.core/man/UnitNamesFile.Rd | 4 -
aroma.core-1.3.1/aroma.core/man/UnitTypesFile.Rd | 4 -
aroma.core-1.3.1/aroma.core/man/fitGenotypeCone.matrix.Rd | 2
aroma.core-1.3.1/aroma.core/man/fitGenotypeConeBySfit.matrix.Rd | 5 +
aroma.core-1.3.1/aroma.core/man/fitMultiDimensionalCone.matrix.Rd | 5 +
aroma.core-1.3.1/aroma.core/man/getOutputDataSet.AromaTransform.Rd | 2
aroma.core-1.3.1/aroma.core/man/segmentByCBS.RawGenomicSignals.Rd | 26 +++++-----
aroma.core-1.3.1/aroma.core/man/segmentByHaarSeg.RawGenomicSignals.Rd | 3 -
61 files changed, 394 insertions(+), 206 deletions(-)
Author: Ulrike Groemping
Title: Full factorials, orthogonal arrays and base utilities for DoE
packages
Description: This package creates full factorial experimental designs
and designs based on orthogonal arrays for (industrial)
experiments. Additionally, it provides some utility functions
used also by other DoE packages.
Diff between DoE.base versions 0.9-4 dated 2009-09-25 and 0.9-5 dated 2009-11-03
DESCRIPTION | 8 ++++---- NAMESPACE | 2 +- inst/NEWS | 8 +++++++- man/formula.design.Rd | 4 ++-- 4 files changed, 14 insertions(+), 8 deletions(-)
Author: Kellie J. Archer
Title: Ordinal classification tree functions
Description: This package contains functions that can be called in
conjunction with rpart for deriving a classification tree when
the response to be predicted is ordinal.
Diff between rpartOrdinal versions 1.0 dated 2009-07-18 and 1.1 dated 2009-11-03
DESCRIPTION | 8 ++++---- data/lowbwt.rda |binary man/loss.matrix.Rd | 11 +++++++---- man/lowbwt.Rd | 5 ++--- man/ordinal.Rd | 12 +++++------- man/rpartOrdinal-package.Rd | 2 +- man/twoing.Rd | 12 ++++-------- 7 files changed, 23 insertions(+), 27 deletions(-)
Author: G Grothendieck
Title: R interface to SymPy computer algebra system
Description: Access SymPy computer algebra system from R via Jython
Diff between rSymPy versions 0.1-2 dated 2009-01-11 and 0.1-4 dated 2009-11-03
rSymPy-0.1-2/rSymPy/inst/jython |only rSymPy-0.1-4/rSymPy/DESCRIPTION | 25 ++++++------- rSymPy-0.1-4/rSymPy/NEWS | 19 +++++++-- rSymPy-0.1-4/rSymPy/R/Sym.R |only rSymPy-0.1-4/rSymPy/R/sympy.R | 69 +++++++++++++++++++++++------------- rSymPy-0.1-4/rSymPy/inst/Lib |only rSymPy-0.1-4/rSymPy/inst/jython.jar |only rSymPy-0.1-4/rSymPy/inst/kopy.bat |only rSymPy-0.1-4/rSymPy/man/Sym.Rd |only rSymPy-0.1-4/rSymPy/man/sympy.Rd | 27 +++++++------- 10 files changed, 88 insertions(+), 52 deletions(-)
Author: Douglas Bates
Diff between MEMSS versions 0.3-5 dated 2009-02-11 and 0.3-6 dated 2009-11-03
Title: Data sets from Mixed-effects Models in S
Description: Data sets and sample analyses from Pinheiro and Bates,
"Mixed-effects Models in S and S-PLUS" (Springer, 2000).
DESCRIPTION | 16 ++++++++++------
man/CO2.Rd | 13 ++++++++-----
2 files changed, 18 insertions(+), 11 deletions(-)
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Documentation for packages distr, distrEx, distrSim, distrTEst
Description: provides documentation in form of a common vignette to
packages distr, distrEx, distrMod, distrSim, distrTEst
Diff between distrDoc versions 2.1.1 dated 2009-07-03 and 2.2 dated 2009-11-03
distrDoc-2.1.1/distrDoc/inst/doc/Rplots.pdf |only distrDoc-2.1.1/distrDoc/inst/doc/distr.R |only distrDoc-2.2/distrDoc/DESCRIPTION | 21 distrDoc-2.2/distrDoc/R/distrDoc.R | 6 distrDoc-2.2/distrDoc/inst/NEWS | 19 distrDoc-2.2/distrDoc/inst/TOBEDONE |only distrDoc-2.2/distrDoc/inst/doc/distr.Rnw | 30 distrDoc-2.2/distrDoc/inst/doc/distr.pdf |33614 ++++++++++++------------- distrDoc-2.2/distrDoc/man/0distrDoc-package.Rd | 19 9 files changed, 16963 insertions(+), 16746 deletions(-)
Author: Matthias Kohl, Peter Ruckdeschel
Title: Implementation of random variables
Description: Implementation of random variables by means of S4 classes
and methods
Diff between RandVar versions 0.6.9 dated 2009-07-31 and 0.7 dated 2009-11-03
DESCRIPTION | 15 +++--- R/Expectation.R | 102 +++++++++++++++++++++--------------------- R/Matrixmult.R | 12 ++-- inst/NEWS | 56 +++++++++++++++++++++++ inst/TOBEDONE |only inst/doc/RandVar.Rnw | 4 - inst/doc/RandVar.pdf |binary man/0RandVar-package.Rd | 17 ++++--- man/EuclRandMatrix-class.Rd | 8 +-- man/EuclRandVarList-class.Rd | 6 +- man/EuclRandVariable-class.Rd | 8 +-- man/RandVariable-class.Rd | 6 +- man/RealRandVariable-class.Rd | 6 +- tests/Examples |only tests/tests.R | 1 tests/tests.Rout.save |only 16 files changed, 153 insertions(+), 88 deletions(-)
Author: Jeffrey A. Ryan, Josh M. Ulrich
Title: Extensible Time Series
Description: Provide for uniform handling of R's different time-based
data classes by extending zoo, maximizing native format
information preservation and allowing for user level
customization and extension, while simplifying cross-class
interoperability.
Diff between xts versions 0.6-8 dated 2009-10-14 and 0.6-9 dated 2009-11-03
DESCRIPTION | 8 NAMESPACE | 4 R/parse8601.R | 4 R/plot.R | 2 inst/doc/xts.pdf | 3023 +++++++++++++++++++++++++--------------------------- man/coredata.xts.Rd | 2 man/plot.xts.Rd | 7 man/xts-package.Rd | 1 src/coredata.c | 8 9 files changed, 1513 insertions(+), 1546 deletions(-)
Author: Spencer Graves, Sundar Dorai-Raj, and Romain Francois
Title: sos
Description: R related Search Engines
Diff between sos versions 1.1-5 dated 2009-10-01 and 1.1-7 dated 2009-11-03
DESCRIPTION | 8 ++++---- R/grepFn.R | 4 ++-- inst/doc/sos.pdf | 6 +++--- man/grepFn.Rd | 4 ++-- 4 files changed, 11 insertions(+), 11 deletions(-)
Author: Peter Ruckdeschel
Title: Utilities for start-up messages
Description: Utilities for start-up messages
Diff between startupmsg versions 0.6 dated 2009-04-15 and 0.7 dated 2009-11-03
DESCRIPTION | 15 ++++++++------- NAMESPACE | 2 +- R/startUpMessage.R | 6 ++++++ inst/NEWS | 16 ++++++++++++++++ inst/TOBEDONE |only man/StartupUtilities.Rd | 6 +++++- tests |only 7 files changed, 36 insertions(+), 9 deletions(-)
Author: Edzer J. Pebesma
Diff between gstat versions 0.9-63 dated 2009-10-05 and 0.9-64 dated 2009-11-03
Title: geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator
(co)simulation; variogram and variogram map plotting utility
functions.
DESCRIPTION | 8
R/fit.lmc.R | 2
R/fit.variogram.reml.R | 3
R/gstat.R | 5
R/gstat.cv.R | 11
R/krige.cv.R | 8
R/predict.gstat.R | 3
R/variogram.default.R | 4
inst/doc/gstat.pdf |29116 +++++++++++++++++++++++++------------------------
man/gstat.Rd | 3
man/krige.cv.Rd | 12
man/variogram.Rd | 4
src/data.c | 6
src/data.h | 9
src/gls.c | 4
src/glvars.c | 10
src/lex.l | 3
src/lm.c | 2
src/nsearch.c | 19
src/s.c | 5
src/utils.c | 4
src/vario.c | 25
src/vario.h | 5
23 files changed, 14994 insertions(+), 14277 deletions(-)
Author: Ronja Foraita, Fabian Sobotka
Title: Validation of graphical models
Description: Simulate data sets given a dependence model, validate
graphical models using the bootstrap, find the best prediction
model using cross validation.
Diff between gmvalid versions 1.2 dated 2008-12-21 and 1.21 dated 2009-11-03
ChangeLog | 8 ++++++++ DESCRIPTION | 31 +++++++++++++++++-------------- inst |only man/unix/gmvalid-package.Rd | 7 ++++--- man/windows/gm.boot.mim.Rd | 2 +- man/windows/gm.cv.Rd | 2 +- man/windows/gm.mim.Rd | 2 +- man/windows/gmvalid-package.Rd | 11 ++++++----- 8 files changed, 38 insertions(+), 25 deletions(-)
Author: Han Lin Shang and Rob J Hyndman
Title: Functional data sets
Description: Functional data sets
Diff between fds versions 1.1 dated 2009-10-08 and 1.2 dated 2009-11-03
CHANGELOG | 8 +++++++- DESCRIPTION | 8 ++++---- R/hmdcountry.R |only R/hmdstatistic.R |only R/read.hmd.R | 52 +++++++++++++++++++++++++++++++++------------------- man/hmdcountry.Rd |only man/hmdstatistic.Rd |only man/read.hmd.Rd | 12 ++++++++---- 8 files changed, 52 insertions(+), 28 deletions(-)
Author: Diethelm Wuertz and many others, see the SOURCE file
Title: Exotic Option Valuation
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Diff between fExoticOptions versions 2100.76 dated 2009-09-29 and 2110.77 dated 2009-11-03
ChangeLog | 379 +++++++++++++++++ DESCRIPTION | 10 R/AsianOptions.R | 480 +++++++++++----------- R/BarrierOptions.R | 726 ++++++++++++++++------------------ R/BinaryOptions.R | 76 +-- R/CurrencyTranslatedOptions.R | 561 +++++++++++++------------- R/LookbackOptions.R | 893 +++++++++++++++++++++--------------------- R/MultipleAssetsOptions.R | 138 +++--- R/MultipleExercisesOptions.R | 420 +++++++++---------- R/zzz.R | 26 - 10 files changed, 2036 insertions(+), 1673 deletions(-)
More information about fExoticOptions at CRAN
Permanent link
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.9.2.8 dated 2009-10-16 and 2.10.0.0 dated 2009-11-03
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 8 ++++----
R/epicalc.R | 27 +++++++++++++++++----------
man/addMissingRecords.rd | 13 +++++++------
3 files changed, 28 insertions(+), 20 deletions(-)
Author: Peter Ruckdeschel, Matthias Kohl, Anja Hueller, Eleonara Feist
Title: Extensions of package distr for teaching Stochastics/Statistics
in secondary school
Description: Extensions of package distr and some additional
functionality
Diff between distrTeach versions 2.1 dated 2009-04-15 and 2.2 dated 2009-11-03
DESCRIPTION | 17 +++++++++-------- demo/illustCLT.R | 1 + demo/illustLLN.R | 1 + inst/NEWS | 24 +++++++++++++++++++++++- inst/TOBEDONE |only man/0distrTeach-package.Rd | 42 ++++++++++++++++++++++++------------------ man/IllustLLN.Rd | 6 +++--- tests |only 8 files changed, 61 insertions(+), 30 deletions(-)
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Estimation and Testing classes based on package distr
Description: Evaluation (S4-)classes based on package distr for
evaluating procedures (estimators/tests) at data/simulation in
a unified way.
Diff between distrTEst versions 2.1.1 dated 2009-07-31 and 2.2 dated 2009-11-03
distrTEst-2.1.1/distrTEst/man/distrTEstOptions.Rd |only distrTEst-2.2/distrTEst/DESCRIPTION | 19 +++++++++-------- distrTEst-2.2/distrTEst/inst/NEWS | 12 +++++++++++ distrTEst-2.2/distrTEst/inst/TOBEDONE |only distrTEst-2.2/distrTEst/man/0distrTEst-package.Rd | 24 ++++++++++++++-------- distrTEst-2.2/distrTEst/man/Evaluation-class.Rd | 12 +++++------ distrTEst-2.2/distrTEst/man/distrTEstoptions.Rd |only distrTEst-2.2/distrTEst/tests |only 8 files changed, 44 insertions(+), 23 deletions(-)
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Simulation classes based on package distr
Description: Simulation (S4-)classes based on package distr
Diff between distrSim versions 2.1.1 dated 2009-07-31 and 2.2 dated 2009-11-03
distrSim-2.1.1/distrSim/man/distrSimOptions.Rd |only distrSim-2.2/distrSim/DESCRIPTION | 19 +++++++++-------- distrSim-2.2/distrSim/inst/NEWS | 17 +++++++++++++++ distrSim-2.2/distrSim/inst/TOBEDONE |only distrSim-2.2/distrSim/man/0distrSim-package.Rd | 26 +++++++++++++++--------- distrSim-2.2/distrSim/man/distrSimoptions.Rd |only distrSim-2.2/distrSim/man/print-methods.Rd | 2 - distrSim-2.2/distrSim/man/subsetting-methods.Rd | 2 - distrSim-2.2/distrSim/man/summary-methods.Rd | 14 ++++++------ distrSim-2.2/distrSim/man/versionmanagement.Rd | 2 - distrSim-2.2/distrSim/tests |only 11 files changed, 54 insertions(+), 28 deletions(-)
Author: Matthias Kohl, Peter Ruckdeschel
Title: Object orientated implementation of probability models
Description: Object orientated implementation of probability models
based on packages 'distr' and 'distrEx'
Diff between distrMod versions 2.1.1 dated 2009-07-31 and 2.2 dated 2009-11-03
distrMod-2.1.1/distrMod/R/DistrSymmList.R |only distrMod-2.1.1/distrMod/R/PosDefSymmMatrix.R |only distrMod-2.1.1/distrMod/R/solve.R |only distrMod-2.1.1/distrMod/R/sqrt.R |only distrMod-2.1.1/distrMod/man/DistrSymmList-class.Rd |only distrMod-2.1.1/distrMod/man/DistrSymmList.Rd |only distrMod-2.1.1/distrMod/man/DistributionSymmetry-class.Rd |only distrMod-2.1.1/distrMod/man/EllipticalSymmetry-class.Rd |only distrMod-2.1.1/distrMod/man/EllipticalSymmetry.Rd |only distrMod-2.1.1/distrMod/man/NoSymmetry-class.Rd |only distrMod-2.1.1/distrMod/man/NoSymmetry.Rd |only distrMod-2.1.1/distrMod/man/PosDefSymmMatrix-class.Rd |only distrMod-2.1.1/distrMod/man/PosDefSymmMatrix.Rd |only distrMod-2.1.1/distrMod/man/SphericalSymmetry-class.Rd |only distrMod-2.1.1/distrMod/man/SphericalSymmetry.Rd |only distrMod-2.1.1/distrMod/man/Symmetry-class.Rd |only distrMod-2.1.1/distrMod/man/solve-methods.Rd |only distrMod-2.1.1/distrMod/man/sqrt-methods.Rd |only distrMod-2.2/distrMod/DESCRIPTION | 19 - distrMod-2.2/distrMod/NAMESPACE | 22 - distrMod-2.2/distrMod/R/0distrModOptions.R | 3 distrMod-2.2/distrMod/R/0distrModUtils.R | 43 ++- distrMod-2.2/distrMod/R/AllClass.R | 104 ++----- distrMod-2.2/distrMod/R/AllGeneric.R | 21 - distrMod-2.2/distrMod/R/AllPlot.R | 11 distrMod-2.2/distrMod/R/AllShow.R | 56 ++-- distrMod-2.2/distrMod/R/Confint-class.R | 8 distrMod-2.2/distrMod/R/Estimate.R | 43 ++- distrMod-2.2/distrMod/R/Estimator.R | 6 distrMod-2.2/distrMod/R/Expectation.R | 12 distrMod-2.2/distrMod/R/L2ParamFamily.R | 25 - distrMod-2.2/distrMod/R/MCEstimate.R |only distrMod-2.2/distrMod/R/MCEstimator.R | 9 distrMod-2.2/distrMod/R/MDEstimator.R | 18 - distrMod-2.2/distrMod/R/MLEstimator.R | 5 distrMod-2.2/distrMod/R/ParamFamParameter.R | 49 ++- distrMod-2.2/distrMod/R/ParamFamily.R | 32 ++ distrMod-2.2/distrMod/R/ProbFamily.R | 2 distrMod-2.2/distrMod/R/SimpleL2ParamFamilies.R | 4 distrMod-2.2/distrMod/R/Symmetry.R | 16 - distrMod-2.2/distrMod/R/confint.R | 2 distrMod-2.2/distrMod/R/internalMleCalc.R | 21 + distrMod-2.2/distrMod/R/mleCalc-methods.R | 92 +++++- distrMod-2.2/distrMod/R/modifyModel.R | 2 distrMod-2.2/distrMod/R/qqplot.R |only distrMod-2.2/distrMod/R/setAs.R | 11 distrMod-2.2/distrMod/demo/modelExp3.R | 2 distrMod-2.2/distrMod/inst/MASKING | 10 distrMod-2.2/distrMod/inst/NEWS | 118 ++++++++ distrMod-2.2/distrMod/inst/TOBEDONE |only distrMod-2.2/distrMod/inst/scripts/BetaFam.R | 84 ++++++ distrMod-2.2/distrMod/inst/scripts/PoisFam.R | 75 +++++ distrMod-2.2/distrMod/inst/scripts/censoredPois.R | 135 +++++++++- distrMod-2.2/distrMod/inst/scripts/distrModExample.R |only distrMod-2.2/distrMod/inst/scripts/distrModExample1.R |only distrMod-2.2/distrMod/inst/scripts/example_CvMMDE.R | 104 +++++++ distrMod-2.2/distrMod/inst/scripts/examples2.R | 189 +++++++++++++- distrMod-2.2/distrMod/inst/scripts/modelExp3.R | 48 +++ distrMod-2.2/distrMod/man/0distrMod-package.Rd | 32 +- distrMod-2.2/distrMod/man/BiasType-class.Rd | 2 distrMod-2.2/distrMod/man/Confint-class.Rd | 33 +- distrMod-2.2/distrMod/man/Estimate-class.Rd | 149 +++++++---- distrMod-2.2/distrMod/man/Estimator.Rd | 3 distrMod-2.2/distrMod/man/EvenSymmetric-class.Rd | 4 distrMod-2.2/distrMod/man/EvenSymmetric.Rd | 2 distrMod-2.2/distrMod/man/FunSymmList-class.Rd | 2 distrMod-2.2/distrMod/man/FunctionSymmetry-class.Rd | 6 distrMod-2.2/distrMod/man/GammaFamily.Rd | 2 distrMod-2.2/distrMod/man/GumbelLocationFamily.Rd | 2 distrMod-2.2/distrMod/man/L2GroupFamily-class.Rd | 34 +- distrMod-2.2/distrMod/man/L2LocationFamily-class.Rd | 36 +- distrMod-2.2/distrMod/man/L2LocationScaleFamily-class.Rd | 36 +- distrMod-2.2/distrMod/man/L2ParamFamily-class.Rd | 44 +-- distrMod-2.2/distrMod/man/L2ScaleFamily-class.Rd | 36 +- distrMod-2.2/distrMod/man/MCEstimate-class.Rd | 52 ++- distrMod-2.2/distrMod/man/MCEstimator.Rd | 10 distrMod-2.2/distrMod/man/MDEstimator.Rd | 20 + distrMod-2.2/distrMod/man/MLEstimator.Rd | 5 distrMod-2.2/distrMod/man/NonSymmetric-class.Rd | 4 distrMod-2.2/distrMod/man/NormType-class.Rd | 4 distrMod-2.2/distrMod/man/OddSymmetric-class.Rd | 4 distrMod-2.2/distrMod/man/OddSymmetric.Rd | 2 distrMod-2.2/distrMod/man/ParamFamParameter-class.Rd | 10 distrMod-2.2/distrMod/man/ParamFamily-class.Rd | 18 - distrMod-2.2/distrMod/man/ProbFamily-class.Rd | 8 distrMod-2.2/distrMod/man/QFnorm-class.Rd | 6 distrMod-2.2/distrMod/man/RiskType-class.Rd | 2 distrMod-2.2/distrMod/man/asBias-class.Rd | 6 distrMod-2.2/distrMod/man/asCov-class.Rd | 2 distrMod-2.2/distrMod/man/asGRisk-class.Rd | 6 distrMod-2.2/distrMod/man/asHampel-class.Rd | 6 distrMod-2.2/distrMod/man/asMSE-class.Rd | 6 distrMod-2.2/distrMod/man/asRisk-class.Rd | 2 distrMod-2.2/distrMod/man/asRiskwithBias-class.Rd | 6 distrMod-2.2/distrMod/man/asSemivar-class.Rd | 13 distrMod-2.2/distrMod/man/asUnOvShoot-class.Rd | 8 distrMod-2.2/distrMod/man/asymmetricBias-class.Rd | 4 distrMod-2.2/distrMod/man/confint-methods.Rd | 2 distrMod-2.2/distrMod/man/distrModOptions.Rd | 13 distrMod-2.2/distrMod/man/fiBias-class.Rd | 2 distrMod-2.2/distrMod/man/fiCov-class.Rd | 2 distrMod-2.2/distrMod/man/fiHampel-class.Rd | 4 distrMod-2.2/distrMod/man/fiMSE-class.Rd | 2 distrMod-2.2/distrMod/man/fiRisk-class.Rd | 2 distrMod-2.2/distrMod/man/fiUnOvShoot-class.Rd | 6 distrMod-2.2/distrMod/man/internalClassUnions-class.Rd | 9 distrMod-2.2/distrMod/man/internals-qqplot.Rd |only distrMod-2.2/distrMod/man/internals.Rd | 12 distrMod-2.2/distrMod/man/meRes.Rd | 10 distrMod-2.2/distrMod/man/mleCalc-methods.Rd | 7 distrMod-2.2/distrMod/man/onesidedBias-class.Rd | 6 distrMod-2.2/distrMod/man/qqplot.Rd |only distrMod-2.2/distrMod/man/symmetricBias-class.Rd | 2 distrMod-2.2/distrMod/man/trAsCov-class.Rd | 2 distrMod-2.2/distrMod/man/trFiCov-class.Rd | 2 distrMod-2.2/distrMod/man/trafo-methods.Rd | 4 distrMod-2.2/distrMod/man/trafoEst.Rd | 4 distrMod-2.2/distrMod/tests |only 118 files changed, 1544 insertions(+), 575 deletions(-)
Author: Matthias Kohl, Peter Ruckdeschel
Title: Extensions of package distr
Description: Extensions of package distr and some additional
functionality
Diff between distrEx versions 2.1 dated 2009-04-15 and 2.2 dated 2009-11-03
DESCRIPTION | 17 +- NAMESPACE | 5 R/AllClass.R | 54 ++++++ R/AllInitialize.R | 70 ++++++++ R/ClippedMoments.R | 11 - R/ConvexContamination.R | 27 +++ R/DiscreteMVDistribution.R | 3 R/Expectation.R | 249 +++++++++++++++++++++++++++++--- R/Functionals.R | 75 ++++++++- R/GPareto.R |only R/KolmogorovDist.R | 34 +--- R/Kurtosis.R | 54 ++++++ R/Skewness.R | 42 +++++ demo/Prognose.R | 2 inst/NEWS | 87 +++++++++++ inst/TOBEDONE |only man/0distrEx-package.Rd | 22 +- man/AbscontCondDistribution-class.Rd | 32 ++-- man/Condition-class.Rd | 2 man/DiscreteCondDistribution-class.Rd | 34 ++-- man/DiscreteMVDistribution-class.Rd | 22 +- man/DiscreteMVDistribution.Rd | 12 + man/E.Rd | 66 ++++++++ man/EuclCondition-class.Rd | 4 man/GPareto-class.Rd |only man/GPareto.Rd |only man/GParetoParameter-class.Rd |only man/Gumbel-class.Rd | 32 ++-- man/GumbelParameter-class.Rd | 6 man/LMParameter-class.Rd | 8 - man/MultivariateDistribution-class.Rd | 24 ++- man/Pareto-class.Rd | 36 +++- man/Pareto.Rd | 2 man/ParetoParameter-class.Rd | 6 man/PrognCondition-class.Rd | 4 man/UnivariateCondDistribution-class.Rd | 26 ++- man/Var.Rd | 30 +++ man/distrExConstants.Rd | 4 man/distrExOptions.Rd | 2 tests |only 40 files changed, 915 insertions(+), 189 deletions(-)
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Object orientated implementation of distributions
Description: Object orientated implementation of distributions
Diff between distr versions 2.1.3 dated 2009-07-03 and 2.2 dated 2009-11-03
distr-2.1.3/distr/inst/doc/Rplots.pdf |only distr-2.1.3/distr/man/ContDistribution-class.Rd |only distr-2.1.3/distr/man/ContDistribution.Rd |only distr-2.2/distr/DESCRIPTION | 16 + distr-2.2/distr/NAMESPACE | 13 + distr-2.2/distr/R/0distrOptions.R | 5 distr-2.2/distr/R/AllClasses.R | 135 ++++++++++++++- distr-2.2/distr/R/AllGenerics.R | 27 ++- distr-2.2/distr/R/AllInitialize.R | 34 ++- distr-2.2/distr/R/CompoundDistribution.R | 17 + distr-2.2/distr/R/ContDistribution.R | 158 ++++++++++++++---- distr-2.2/distr/R/Convpow.r | 15 + distr-2.2/distr/R/DiscreteDistribution.R | 154 ++++++++++++++--- distr-2.2/distr/R/DistrList.R | 31 +++ distr-2.2/distr/R/DistrSymmList.R |only distr-2.2/distr/R/Distribution.R | 12 + distr-2.2/distr/R/ExtraConvolutionMethods.R | 5 distr-2.2/distr/R/Huberize.R | 8 distr-2.2/distr/R/LaplaceDistribution.R | 6 distr-2.2/distr/R/LatticeDistribution.R | 65 +++++-- distr-2.2/distr/R/NormalDistribution.R | 17 + distr-2.2/distr/R/PosDefSymmMatrix.R |only distr-2.2/distr/R/Symmetry.R |only distr-2.2/distr/R/Truncate.R | 25 ++ distr-2.2/distr/R/UnivarLebDecDistribution.R | 11 + distr-2.2/distr/R/UnivarMixingDistribution.R | 54 ++++++ distr-2.2/distr/R/bAcDcLcDistribution.R | 29 ++- distr-2.2/distr/R/bAffLinUnivarLebDecDistribution.R | 15 + distr-2.2/distr/R/internalUtils.R | 4 distr-2.2/distr/R/internalUtils_LCD.R | 17 + distr-2.2/distr/R/internalUtils_trunc.R | 4 distr-2.2/distr/R/internals-qqplot.R |only distr-2.2/distr/R/print-show-methods.R | 8 distr-2.2/distr/R/qqbounds.R |only distr-2.2/distr/R/qqplot.R |only distr-2.2/distr/R/setIsRelations.R | 15 - distr-2.2/distr/R/solve.R |only distr-2.2/distr/R/sqrt.R |only distr-2.2/distr/inst/MASKING | 29 ++- distr-2.2/distr/inst/NEWS | 62 +++++++ distr-2.2/distr/inst/TOBEDONE |only distr-2.2/distr/inst/doc/newDistributions.Rnw | 14 - distr-2.2/distr/inst/doc/newDistributions.pdf |binary distr-2.2/distr/man/0distr-package.Rd | 134 ++++++++++----- distr-2.2/distr/man/AbscontDistribution-class.Rd |only distr-2.2/distr/man/AbscontDistribution.Rd |only distr-2.2/distr/man/Arcsine-class.Rd | 28 +-- distr-2.2/distr/man/Beta-class.Rd | 30 ++- distr-2.2/distr/man/BetaParameter-class.Rd | 8 distr-2.2/distr/man/Binom-class.Rd | 32 ++- distr-2.2/distr/man/BinomParameter-class.Rd | 6 distr-2.2/distr/man/Cauchy-class.Rd | 30 ++- distr-2.2/distr/man/CauchyParameter-class.Rd | 7 distr-2.2/distr/man/Chisq-class.Rd | 30 ++- distr-2.2/distr/man/ChisqParameter-class.Rd | 6 distr-2.2/distr/man/CompoundDistribution-class.Rd | 36 ++-- distr-2.2/distr/man/DExp-class.Rd | 30 ++- distr-2.2/distr/man/Dirac-class.Rd | 34 ++- distr-2.2/distr/man/DiracParameter-class.Rd | 4 distr-2.2/distr/man/DiscreteDistribution-class.Rd | 56 +++--- distr-2.2/distr/man/DiscreteDistribution.Rd | 22 +- distr-2.2/distr/man/DistrList-class.Rd | 2 distr-2.2/distr/man/DistrList.Rd | 11 - distr-2.2/distr/man/DistrSymmList-class.Rd |only distr-2.2/distr/man/DistrSymmList.Rd |only distr-2.2/distr/man/Distribution-class.Rd | 29 ++- distr-2.2/distr/man/DistributionSymmetry-class.Rd |only distr-2.2/distr/man/EllipticalSymmetry-class.Rd |only distr-2.2/distr/man/EllipticalSymmetry.Rd |only distr-2.2/distr/man/EuclideanSpace-class.Rd | 4 distr-2.2/distr/man/Exp-class.Rd | 24 ++ distr-2.2/distr/man/ExpOrGammaOrChisq-class.Rd | 3 distr-2.2/distr/man/ExpParameter-class.Rd | 4 distr-2.2/distr/man/FParameter-class.Rd | 9 - distr-2.2/distr/man/Fd-class.Rd | 32 ++- distr-2.2/distr/man/GammaParameter-class.Rd | 6 distr-2.2/distr/man/Gammad-class.Rd | 31 ++- distr-2.2/distr/man/Geom-class.Rd | 32 ++- distr-2.2/distr/man/GeomParameter-class.Rd | 4 distr-2.2/distr/man/Hyper-class.Rd | 34 ++- distr-2.2/distr/man/HyperParameter-class.Rd | 8 distr-2.2/distr/man/Integer-class.Rd | 4 distr-2.2/distr/man/Lattice-class.Rd | 8 distr-2.2/distr/man/LatticeDistribution-class.Rd | 40 ++-- distr-2.2/distr/man/LatticeDistribution.Rd | 25 +- distr-2.2/distr/man/Lnorm-class.Rd | 30 ++- distr-2.2/distr/man/LnormParameter-class.Rd | 6 distr-2.2/distr/man/Logis-class.Rd | 30 ++- distr-2.2/distr/man/LogisParameter-class.Rd | 6 distr-2.2/distr/man/Math-methods.Rd | 8 distr-2.2/distr/man/Naturals-class.Rd | 4 distr-2.2/distr/man/Nbinom-class.Rd | 32 ++- distr-2.2/distr/man/NbinomParameter-class.Rd | 6 distr-2.2/distr/man/NoSymmetry-class.Rd |only distr-2.2/distr/man/NoSymmetry.Rd |only distr-2.2/distr/man/Norm-class.Rd | 30 ++- distr-2.2/distr/man/NormParameter-class.Rd | 6 distr-2.2/distr/man/Parameter-class.Rd | 2 distr-2.2/distr/man/Pois-class.Rd | 32 ++- distr-2.2/distr/man/PoisParameter-class.Rd | 4 distr-2.2/distr/man/PosDefSymmMatrix-class.Rd |only distr-2.2/distr/man/PosDefSymmMatrix.Rd |only distr-2.2/distr/man/Reals-class.Rd | 4 distr-2.2/distr/man/SphericalSymmetry-class.Rd |only distr-2.2/distr/man/SphericalSymmetry.Rd |only distr-2.2/distr/man/Symmetry-class.Rd |only distr-2.2/distr/man/TParameter-class.Rd | 6 distr-2.2/distr/man/Td-class.Rd | 30 ++- distr-2.2/distr/man/UniNormParameter-class.Rd | 6 distr-2.2/distr/man/Unif-class.Rd | 26 +- distr-2.2/distr/man/UnifParameter-class.Rd | 6 distr-2.2/distr/man/UnivarDistrList-class.Rd | 2 distr-2.2/distr/man/UnivarDistrList.Rd | 10 - distr-2.2/distr/man/UnivarLebDecDistribution-class.Rd | 66 ++++--- distr-2.2/distr/man/UnivarMixingDistribution-class.Rd | 45 +++-- distr-2.2/distr/man/UnivarMixingDistribution.Rd | 2 distr-2.2/distr/man/UnivariateDistribution-class.Rd | 30 ++- distr-2.2/distr/man/Weibull-class.Rd | 30 ++- distr-2.2/distr/man/WeibullParameter-class.Rd | 6 distr-2.2/distr/man/distroptions.Rd | 12 + distr-2.2/distr/man/internalClassUnions-class.Rd |only distr-2.2/distr/man/internals-qqplot.Rd |only distr-2.2/distr/man/internals.Rd | 2 distr-2.2/distr/man/operators-methods.Rd | 2 distr-2.2/distr/man/options.Rd | 6 distr-2.2/distr/man/plot-methods.Rd | 20 +- distr-2.2/distr/man/qqbounds.Rd |only distr-2.2/distr/man/qqplot.Rd |only distr-2.2/distr/man/rSpace-class.Rd | 2 distr-2.2/distr/man/solve-methods.Rd |only distr-2.2/distr/man/sqrt-methods.Rd |only distr-2.2/distr/tests |only 132 files changed, 1630 insertions(+), 687 deletions(-)
Author: Pin T. Ng
Diff between cobs99 versions 0.9-7 dated 2007-10-09 and 0.9-8 dated 2009-11-03
Title: Constrained B-splines -- outdated 1999 version
Description: Qualitatively Constrained (Regression) Smoothing via
Linear Programming. OUTDATED version based on He & Ng (1999),
the modified "non-simplex" algorithm of Bartels and Conn
(1980).
ChangeLog | 8 ++++++++
DESCRIPTION | 22 ++++++++++++----------
man/cobs.Rd | 6 +++---
man/cobsOld.Rd | 7 +++----
man/predict.cobs.Rd | 3 ---
man/qbsks.Rd | 2 --
tests/small-ex.Rout.save | 4 ++--
tests/spline-ex.Rout.save | 24 ++++++++++++------------
8 files changed, 40 insertions(+), 36 deletions(-)
Author: Henrik Bengtsson
Diff between aroma.affymetrix versions 1.2.0 dated 2009-09-10 and 1.3.0 dated 2009-11-03
More information about aroma.affymetrix at CRAN
Title: Analysis of large Affymetrix microarray data sets
Description: This package implements classes for files and sets of
files for various Affymetrix file formats, e.g.
AffymetrixCdfFile, AffymetrixCelFile, and AffymetrixCelSet.
These are designed to be memory efficient but still being fast.
The idea is to keep all data on file and only read data into
memory when needed. Clever caching mechanisms are used to
minimize the overhead of data IO. All of the above is hidden
in the package API and for the developer (and the end user),
the data is queried as if it lives in memory. With this design
it is only the diskspace that limits what number of arrays can
be analyzed.
aroma.affymetrix-1.2.0/aroma.affymetrix/man/fromFiles.AffymetrixFileSet.Rd |only
aroma.affymetrix-1.3.0/aroma.affymetrix/DESCRIPTION | 26 -
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AffymetrixCdfFile.R | 6
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AffymetrixCelFile.R | 7
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AffymetrixCelSet.R | 27 -
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AffymetrixCelSet.extractSnpFeatureSet.R |only
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AffymetrixCelSet.importFromDChip.R | 6
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AffymetrixCelSet.xtras.R | 2
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AffymetrixCelSetTuple.R | 2
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AffymetrixCnChpFile.R | 6
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AffymetrixCnChpSet.R | 11
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AffymetrixCnChpSet.extras.R | 2
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AffymetrixCsvFile.R | 6
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AffymetrixFileSet.R | 12
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AffymetrixProbeTabFile.R | 9
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AffymetrixTsvFile.R | 5
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AromaCellMatchScoreFile.R | 5
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AromaCellSequenceFile.AFFX.R | 56 +++
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AromaUfcFile.R | 7
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AromaUflFile.R | 5
aroma.affymetrix-1.3.0/aroma.affymetrix/R/AromaUnitGcContentFile.R | 5
aroma.affymetrix-1.3.0/aroma.affymetrix/R/ChipEffectGroupMerge.R | 2
aroma.affymetrix-1.3.0/aroma.affymetrix/R/ChipEffectSet.R | 4
aroma.affymetrix-1.3.0/aroma.affymetrix/R/CnChipEffectSet.R | 4
aroma.affymetrix-1.3.0/aroma.affymetrix/R/CnChipEffectSet.importFromApt.R | 2
aroma.affymetrix-1.3.0/aroma.affymetrix/R/CnChipEffectSet.importFromDChip.R | 2
aroma.affymetrix-1.3.0/aroma.affymetrix/R/CnPlm.R | 4
aroma.affymetrix-1.3.0/aroma.affymetrix/R/CnagCfhFile.R | 7
aroma.affymetrix-1.3.0/aroma.affymetrix/R/CnagCfhSet.R | 24 -
aroma.affymetrix-1.3.0/aroma.affymetrix/R/CrlmmModel.R | 6
aroma.affymetrix-1.3.0/aroma.affymetrix/R/CrlmmParametersSet.R | 6
aroma.affymetrix-1.3.0/aroma.affymetrix/R/DChipCdfBinFile.R | 1
aroma.affymetrix-1.3.0/aroma.affymetrix/R/DChipDcpFile.R | 6
aroma.affymetrix-1.3.0/aroma.affymetrix/R/DChipDcpSet.R | 11
aroma.affymetrix-1.3.0/aroma.affymetrix/R/DChipDcpSet.extras.R | 2
aroma.affymetrix-1.3.0/aroma.affymetrix/R/ExonChipEffectSet.R | 4
aroma.affymetrix-1.3.0/aroma.affymetrix/R/ExonRmaPlm.R | 12
aroma.affymetrix-1.3.0/aroma.affymetrix/R/FirmaSet.R | 4
aroma.affymetrix-1.3.0/aroma.affymetrix/R/PdInfo2Cdf.R | 162 ++++++----
aroma.affymetrix-1.3.0/aroma.affymetrix/R/ProbeLevelModel.calculateResiduals.R | 2
aroma.affymetrix-1.3.0/aroma.affymetrix/R/QualityAssessmentModel.R | 6
aroma.affymetrix-1.3.0/aroma.affymetrix/R/ResidualSet.R | 4
aroma.affymetrix-1.3.0/aroma.affymetrix/R/RmaPlm.R | 128 +++++--
aroma.affymetrix-1.3.0/aroma.affymetrix/R/SnpChipEffectSet.R | 4
aroma.affymetrix-1.3.0/aroma.affymetrix/R/SnpPlm.R | 6
aroma.affymetrix-1.3.0/aroma.affymetrix/R/Transform.R | 4
aroma.affymetrix-1.3.0/aroma.affymetrix/R/WeightsSet.R | 4
aroma.affymetrix-1.3.0/aroma.affymetrix/incl/999.missingdocs.txt | 18 +
aroma.affymetrix-1.3.0/aroma.affymetrix/inst/CITATION | 2
aroma.affymetrix-1.3.0/aroma.affymetrix/inst/NEWS | 36 ++
aroma.affymetrix-1.3.0/aroma.affymetrix/inst/testScripts/replication/chipTypes/HG-U133_Plus_2/extractAffyBatch.R |only
aroma.affymetrix-1.3.0/aroma.affymetrix/inst/testScripts/replication/chipTypes/Mapping50K_Hind240,Xba240/20091016,extractSnpFeatureSet.R |only
aroma.affymetrix-1.3.0/aroma.affymetrix/inst/testScripts/system/chipTypes/GenomeWideSNP_6/test20090901,6.0,CRMAv2,ASCN,TumorBoost.R | 15
aroma.affymetrix-1.3.0/aroma.affymetrix/inst/testScripts/system/chipTypes/HuEx-1_0-st-v2/test20090927,gcrmabg.R |only
aroma.affymetrix-1.3.0/aroma.affymetrix/inst/testScripts/system/chipTypes/HuGene-1_0-st-v1 |only
aroma.affymetrix-1.3.0/aroma.affymetrix/man/AffymetrixCdfFile.Rd | 27 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/AffymetrixCelFile.Rd | 21 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/AffymetrixCelSet.Rd | 21 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/AffymetrixCnChpSet.Rd | 22 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/AffymetrixFile.Rd | 17 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/AffymetrixFileSet.Rd | 18 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/AffymetrixProbeTabFile.Rd | 19 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/AromaChipTypeAnnotationFile.Rd | 19 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/ChipEffectFile.Rd | 29 +
aroma.affymetrix-1.3.0/aroma.affymetrix/man/ChipEffectSet.Rd | 25 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/CnChipEffectFile.Rd | 31 +
aroma.affymetrix-1.3.0/aroma.affymetrix/man/CnChipEffectSet.Rd | 33 +-
aroma.affymetrix-1.3.0/aroma.affymetrix/man/CnPlm.Rd | 8
aroma.affymetrix-1.3.0/aroma.affymetrix/man/CnProbeAffinityFile.Rd | 31 +
aroma.affymetrix-1.3.0/aroma.affymetrix/man/CnagCfhFile.Rd | 17 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/CnagCfhSet.Rd | 15
aroma.affymetrix-1.3.0/aroma.affymetrix/man/CrlmmParametersFile.Rd | 21 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/CrlmmParametersSet.Rd | 19 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/DChipCdfBinFile.Rd | 23 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/DChipDcpFile.Rd | 17 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/DChipDcpSet.Rd | 22 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/DChipGenomeInformation.Rd | 15
aroma.affymetrix-1.3.0/aroma.affymetrix/man/DChipSnpInformation.Rd | 15
aroma.affymetrix-1.3.0/aroma.affymetrix/man/ExonChipEffectFile.Rd | 29 +
aroma.affymetrix-1.3.0/aroma.affymetrix/man/ExonChipEffectSet.Rd | 29 +
aroma.affymetrix-1.3.0/aroma.affymetrix/man/ExonProbeAffinityFile.Rd | 29 +
aroma.affymetrix-1.3.0/aroma.affymetrix/man/ExonRmaPlm.Rd | 14
aroma.affymetrix-1.3.0/aroma.affymetrix/man/FirmaFile.Rd | 27 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/FirmaSet.Rd | 25 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/GenomeInformation.Rd | 15
aroma.affymetrix-1.3.0/aroma.affymetrix/man/HetLogAddCnPlm.Rd | 4
aroma.affymetrix-1.3.0/aroma.affymetrix/man/HetLogAddPlm.Rd | 6
aroma.affymetrix-1.3.0/aroma.affymetrix/man/HetLogAddSnpPlm.Rd | 4
aroma.affymetrix-1.3.0/aroma.affymetrix/man/Model.Rd | 2
aroma.affymetrix-1.3.0/aroma.affymetrix/man/MultiArrayUnitModel.Rd | 2
aroma.affymetrix-1.3.0/aroma.affymetrix/man/Non-documented_objects.Rd | 29 +
aroma.affymetrix-1.3.0/aroma.affymetrix/man/ParameterCelFile.Rd | 27 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/ParameterCelSet.Rd | 23 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/ProbeAffinityFile.Rd | 29 +
aroma.affymetrix-1.3.0/aroma.affymetrix/man/ProbeLevelModel.Rd | 2
aroma.affymetrix-1.3.0/aroma.affymetrix/man/QualityAssessmentFile.Rd | 25 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/QualityAssessmentSet.Rd | 23 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/ResidualFile.Rd | 27 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/ResidualSet.Rd | 23 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/RmaCnPlm.Rd | 4
aroma.affymetrix-1.3.0/aroma.affymetrix/man/RmaPlm.Rd | 5
aroma.affymetrix-1.3.0/aroma.affymetrix/man/RmaSnpPlm.Rd | 4
aroma.affymetrix-1.3.0/aroma.affymetrix/man/SnpChipEffectFile.Rd | 31 +
aroma.affymetrix-1.3.0/aroma.affymetrix/man/SnpChipEffectSet.Rd | 29 +
aroma.affymetrix-1.3.0/aroma.affymetrix/man/SnpInformation.Rd | 15
aroma.affymetrix-1.3.0/aroma.affymetrix/man/SnpPlm.Rd | 12
aroma.affymetrix-1.3.0/aroma.affymetrix/man/SnpProbeAffinityFile.Rd | 31 +
aroma.affymetrix-1.3.0/aroma.affymetrix/man/UgpGenomeInformation.Rd | 15
aroma.affymetrix-1.3.0/aroma.affymetrix/man/UnitModel.Rd | 2
aroma.affymetrix-1.3.0/aroma.affymetrix/man/WeightsFile.Rd | 27 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/WeightsSet.Rd | 23 -
aroma.affymetrix-1.3.0/aroma.affymetrix/man/byPath.AffymetrixFileSet.Rd |only
aroma.affymetrix-1.3.0/aroma.affymetrix/man/getResiduals.QualityAssessmentModel.Rd | 2
aroma.affymetrix-1.3.0/aroma.affymetrix/man/importFromDChip.AffymetrixCelSet.Rd | 2
aroma.affymetrix-1.3.0/aroma.affymetrix/man/isDuplicated.AffymetrixCelSet.Rd | 14
aroma.affymetrix-1.3.0/aroma.affymetrix/man/isDuplicated.CnagCfhSet.Rd | 14
116 files changed, 1144 insertions(+), 662 deletions(-)
Permanent link
Author: Gavin L. Simpson, Jari Oksanen
Title: Analogue and weighted averaging methods for palaeoecology
Description: Fits Modern Analogue Technique and Weighted Averaging
transfer function models for prediction of environmental data
from species data, and related methods used in palaeoecology.
Diff between analogue versions 0.6-8 dated 2009-05-07 and 0.6-21 dated 2009-11-03
DESCRIPTION | 10 +- R/Stratiplot.R | 41 +++++++- R/Stratiplot.formula.R | 14 +- R/deshrink.R |only R/deshrinkPred.R |only R/fixUpTol.R |only R/internal.R | 66 +++++++------ R/join.R | 119 ++++++++++++++++------- R/predict.wa.R | 235 ++++++++++++++++++++++++++++++----------------- R/roc.R | 28 ++++- R/tran.R | 42 ++++++-- R/wa.R | 63 ++++-------- R/wa.formula.R | 6 + R/zzz.R | 2 inst/ChangeLog | 121 +++++++++++++++++++++++- man/Stratiplot.Rd | 44 +++++--- man/analogue-internal.Rd | 11 +- man/deshrink.Rd |only man/join.Rd | 43 ++++++++ man/panel.Stratiplot.Rd | 2 man/roc.Rd | 18 +++ man/stdError.Rd | 2 man/tran.Rd | 60 ++++++++++-- man/wa.Rd | 19 ++- src |only 25 files changed, 679 insertions(+), 267 deletions(-)
Author: Daniel Chessel, Anne-Beatrice Dufour
Diff between ade4 versions 1.4-11 dated 2009-04-04 and 1.4-13 dated 2009-11-03
Title: Analysis of Ecological Data : Exploratory and Euclidean methods
in Environmental sciences
Description: Multivariate data analysis and graphical display.
ChangeLog | 97 ++++++++++++++++++++++++++++++++
DESCRIPTION | 11 +--
R/apqe.R |only
R/area.plot.R | 2
R/dist.binary.R | 12 +++-
R/dist.ktab.R |only
R/dudi.R | 4 -
R/kdisteuclid.R | 12 +---
R/mdpcoa.R |only
R/newick2phylog.R | 41 ++++++-------
R/originality.R | 135 ++++++++++++++++++++++++++++-----------------
R/phylog.R | 18 +++---
R/plot.phylog.R | 8 +-
R/pta.R | 6 +-
data/macroloire.rda |only
data/meaudret.rda |binary
data/rhizobium.rda |only
data/toxicity.rda |binary
data/woangers.rda |only
man/apqe.Rd |only
man/dist.binary.Rd | 2
man/dist.ktab.Rd |only
man/macroloire.Rd |only
man/mdpcoa.Rd |only
man/meau.Rd | 18 ++++--
man/meaudret.Rd | 17 ++++-
man/multispati.Rd | 2
man/multispati.randtest.Rd | 2
man/multispati.rtest.Rd | 2
man/originality.Rd | 19 ++++--
man/rhizobium.Rd |only
man/s.value.Rd | 2
man/scatter.dudi.Rd | 3 +
man/toxicity.Rd | 6 +-
man/variance.phylog.Rd | 2
man/woangers.Rd |only
36 files changed, 290 insertions(+), 131 deletions(-)
Author: Alexis Gabadinho
Diff between TraMineR versions 1.4 dated 2009-08-06 and 1.4-1 dated 2009-11-03
Title: Sequences and trajectories mining for social scientists
Description: This package is a toolbox for sequence manipulation,
description, rendering and more generally sequence data mining
in the field of social sciences. Though it is primarily
intended for analyzing state or event sequences that describe
life courses such as family formation histories or professional
careers its features apply indeed also to many other kinds of
categorical sequence data. It accepts as input many different
sequence representations and provides tools for translating
sequences from one format to another. It offers several
statistical functions for describing and rendering sequences,
for computing distances between sequences with different
metrics among which optimal matching, the longest common prefix
and the longest common subsequence, and simple functions for
extracting the most frequent subsequences and identifying the
most discriminating ones among them. A user's guide can be
found on TraMineR's web page.
TraMineR-1.4-1/TraMineR/DESCRIPTION | 8
TraMineR-1.4-1/TraMineR/NAMESPACE | 7
TraMineR-1.4-1/TraMineR/NEWS | 74 +++--
TraMineR-1.4-1/TraMineR/R/BIOSPELL_to_STS.R | 34 +-
TraMineR-1.4-1/TraMineR/R/Levenshtein.R | 8
TraMineR-1.4-1/TraMineR/R/diss.rep-methods.R |only
TraMineR-1.4-1/TraMineR/R/dissassoc.R | 12
TraMineR-1.4-1/TraMineR/R/dissmfac.R | 10
TraMineR-1.4-1/TraMineR/R/dissrep.R |only
TraMineR-1.4-1/TraMineR/R/normdist.R | 5
TraMineR-1.4-1/TraMineR/R/plot.stslist.R | 20 +
TraMineR-1.4-1/TraMineR/R/plot.stslist.rep.R | 12
TraMineR-1.4-1/TraMineR/R/seqdiff.R | 2
TraMineR-1.4-1/TraMineR/R/seqdist.R | 6
TraMineR-1.4-1/TraMineR/R/seqecmpgroup.R | 12
TraMineR-1.4-1/TraMineR/R/seqecreate.R | 225 +++++++++-------
TraMineR-1.4-1/TraMineR/R/seqerules.R | 174 +++++-------
TraMineR-1.4-1/TraMineR/R/seqplot.R | 8
TraMineR-1.4-1/TraMineR/R/seqrep.R | 259 ++-----------------
TraMineR-1.4-1/TraMineR/R/stslist.rep-methods.R | 19 -
TraMineR-1.4-1/TraMineR/R/subseqelist.R | 1
TraMineR-1.4-1/TraMineR/inst/doc |only
TraMineR-1.4-1/TraMineR/man/alphabet.Rd | 74 ++---
TraMineR-1.4-1/TraMineR/man/biofam.Rd | 16 -
TraMineR-1.4-1/TraMineR/man/cpal.Rd | 80 ++---
TraMineR-1.4-1/TraMineR/man/dissmfac.Rd | 7
TraMineR-1.4-1/TraMineR/man/dissrep.Rd |only
TraMineR-1.4-1/TraMineR/man/mvad.Rd | 6
TraMineR-1.4-1/TraMineR/man/plot.subseqelistchisq.Rd | 6
TraMineR-1.4-1/TraMineR/man/seqST.Rd | 106 +++----
TraMineR-1.4-1/TraMineR/man/seqcomp.Rd | 64 ++--
TraMineR-1.4-1/TraMineR/man/seqdiff.Rd | 28 +-
TraMineR-1.4-1/TraMineR/man/seqdistmc.Rd | 4
TraMineR-1.4-1/TraMineR/man/seqefsub.Rd | 2
TraMineR-1.4-1/TraMineR/man/seqgen.Rd | 50 +--
TraMineR-1.4-1/TraMineR/man/seqplot.Rd | 48 +--
TraMineR-1.4-1/TraMineR/man/seqrep.Rd | 106 +++++--
TraMineR-1.4-1/TraMineR/src/TraMineR.h | 7
TraMineR-1.4-1/TraMineR/src/distancefunctions.cpp | 9
TraMineR-1.4-1/TraMineR/src/eventseq.cpp | 11
TraMineR-1.4-1/TraMineR/src/eventseq.h | 22 +
TraMineR-1.4-1/TraMineR/src/saltt.cpp | 2
TraMineR-1.4-1/TraMineR/src/seqedist.cpp | 225 ++++++++++++----
TraMineR-1.4-1/TraMineR/src/tmrsequence.cpp | 58 ++++
TraMineR-1.4/TraMineR/R/TSE_to_STS.R |only
45 files changed, 985 insertions(+), 842 deletions(-)
Author: Sergej Potapov
Diff between TWIX versions 0.2.6 dated 2008-11-28 and 0.2.10 dated 2009-11-03
Title: Trees WIth eXtra splits
Description: Trees with extra splits
TWIX-0.2.10/TWIX/DESCRIPTION | 22 -
TWIX-0.2.10/TWIX/NAMESPACE | 9
TWIX-0.2.10/TWIX/R/bagg.boottwix.R | 6
TWIX-0.2.10/TWIX/R/boottwix.R | 119 ++++-
TWIX-0.2.10/TWIX/R/get.splitvar.R | 2
TWIX-0.2.10/TWIX/R/get.tree.R | 77 +--
TWIX-0.2.10/TWIX/R/impor.R | 19
TWIX-0.2.10/TWIX/R/plot.twix.R | 215 ++++-----
TWIX-0.2.10/TWIX/R/predict.bootwix.R | 66 ++-
TWIX-0.2.10/TWIX/R/predict.bundl.R |only
TWIX-0.2.10/TWIX/R/predict.twix.R | 14
TWIX-0.2.10/TWIX/R/print.padj.tree.R | 44 +-
TWIX-0.2.10/TWIX/R/print.single.tree.R | 48 +-
TWIX-0.2.10/TWIX/R/print.twix.R | 2
TWIX-0.2.10/TWIX/R/s_b.padj.R |only
TWIX-0.2.10/TWIX/R/sp.bagg.R | 605 ++++++----------------------
TWIX-0.2.10/TWIX/R/sp.slave.R | 237 ++---------
TWIX-0.2.10/TWIX/R/splitt.cross.R |only
TWIX-0.2.10/TWIX/R/splitt.deviance.R | 277 ++++++++----
TWIX-0.2.10/TWIX/R/splitt.padj.R | 16
TWIX-0.2.10/TWIX/R/trace.plot.R | 4
TWIX-0.2.10/TWIX/R/tuneTWIX.R | 321 ++++++++++++++
TWIX-0.2.10/TWIX/R/twix.R | 646 ++++++------------------------
TWIX-0.2.10/TWIX/R/utils.R |only
TWIX-0.2.10/TWIX/man/Devplot.Rd | 4
TWIX-0.2.10/TWIX/man/bagg.default.Rd | 11
TWIX-0.2.10/TWIX/man/bootwix.Rd | 106 +++-
TWIX-0.2.10/TWIX/man/deviance.twix.Rd | 2
TWIX-0.2.10/TWIX/man/export.Rd | 2
TWIX-0.2.10/TWIX/man/fullrks.Rd | 4
TWIX-0.2.10/TWIX/man/plot.twix.Rd | 9
TWIX-0.2.10/TWIX/man/predict.twix.Rd | 3
TWIX-0.2.10/TWIX/man/print.id.tree.Rd | 2
TWIX-0.2.10/TWIX/man/print.single.tree.Rd | 2
TWIX-0.2.10/TWIX/man/print.twix.Rd | 2
TWIX-0.2.10/TWIX/man/scree.plot.Rd | 2
TWIX-0.2.10/TWIX/man/splitt_dev.Rd |only
TWIX-0.2.10/TWIX/man/splitt_padj.Rd | 6
TWIX-0.2.10/TWIX/man/summary.twix.Rd | 2
TWIX-0.2.10/TWIX/man/trace.plot.Rd | 4
TWIX-0.2.10/TWIX/man/tuneTWIX.Rd | 57 ++
TWIX-0.2.10/TWIX/man/twix.Rd | 83 +--
TWIX-0.2.10/TWIX/src/Devleaf.c | 30 -
TWIX-0.2.10/TWIX/src/Devleaf.h | 2
TWIX-0.2.10/TWIX/src/important.c | 85 +--
TWIX-0.2.10/TWIX/src/maxstat.c | 134 +++---
TWIX-0.2.10/TWIX/src/maxstat.h |only
TWIX-0.2.10/TWIX/src/pLausen94.c | 25 -
TWIX-0.2.10/TWIX/src/pLausen94.h | 1
TWIX-0.2.10/TWIX/src/predict.c |only
TWIX-0.2.10/TWIX/src/split-sum.c | 141 ++----
TWIX-0.2.10/TWIX/src/split-sum_cr.c | 122 ++---
TWIX-0.2.10/TWIX/src/split_boot.c |only
TWIX-0.2.10/TWIX/src/split_boot.h |only
TWIX-0.2.10/TWIX/src/split_cat.c | 243 ++++++-----
TWIX-0.2.10/TWIX/src/split_cat.h |only
TWIX-0.2.10/TWIX/src/split_cross.c | 132 +++---
TWIX-0.2.10/TWIX/src/split_int.c |only
TWIX-0.2.10/TWIX/src/split_num.c |only
TWIX-0.2.10/TWIX/src/split_rule.c | 457 +++++++++++++++++----
TWIX-0.2.10/TWIX/src/tw_table.c | 84 +--
TWIX-0.2.10/TWIX/src/tw_table.h | 3
TWIX-0.2.10/TWIX/src/utils.c | 204 +++++++++
TWIX-0.2.10/TWIX/src/utils.h | 14
TWIX-0.2.6/TWIX/R/nlogn.R |only
TWIX-0.2.6/TWIX/R/predict.boot.R |only
TWIX-0.2.6/TWIX/R/sb.padj.R |only
TWIX-0.2.6/TWIX/clean.sh |only
TWIX-0.2.6/TWIX/man/splitt.Rd |only
TWIX-0.2.6/TWIX/src/pred.c |only
TWIX-0.2.6/TWIX/src/split_single.c |only
71 files changed, 2458 insertions(+), 2269 deletions(-)
Author: Peter Ruckdeschel
Title: Utilities for Sweave together with TeX listings package
Description: provides utilities for defining R / Rd as
Tex-package-listings "language" and including R / Rd source
file (sniplets) copied from R-forge in its most recent version
(or another url) thereby avoiding inconsistencies between
vignette and documented source code
Diff between SweaveListingUtils versions 0.3.3 dated 2009-07-31 and 0.4 dated 2009-11-03
SweaveListingUtils-0.3.3/SweaveListingUtils/inst/try/try.Rtex.rnw |only SweaveListingUtils-0.3.3/SweaveListingUtils/inst/try/try.aux |only SweaveListingUtils-0.3.3/SweaveListingUtils/inst/try/try.log |only SweaveListingUtils-0.3.3/SweaveListingUtils/inst/try/try.nav |only SweaveListingUtils-0.3.3/SweaveListingUtils/inst/try/try.out |only SweaveListingUtils-0.3.3/SweaveListingUtils/inst/try/try.pdf |only SweaveListingUtils-0.3.3/SweaveListingUtils/inst/try/try.snm |only SweaveListingUtils-0.3.3/SweaveListingUtils/inst/try/try.toc |only SweaveListingUtils-0.3.3/SweaveListingUtils/inst/try/try.vrb |only SweaveListingUtils-0.4/SweaveListingUtils/DESCRIPTION | 17 SweaveListingUtils-0.4/SweaveListingUtils/NAMESPACE | 1 SweaveListingUtils-0.4/SweaveListingUtils/R/SweaveListingOptions.R | 10 SweaveListingUtils-0.4/SweaveListingUtils/R/SweaveListingUtils.R | 506 +++------ SweaveListingUtils-0.4/SweaveListingUtils/R/keywordsStyle.R | 47 SweaveListingUtils-0.4/SweaveListingUtils/R/lstset.R |only SweaveListingUtils-0.4/SweaveListingUtils/R/taglist.R |only SweaveListingUtils-0.4/SweaveListingUtils/inst/NEWS | 74 + SweaveListingUtils-0.4/SweaveListingUtils/inst/TOBEDONE |only SweaveListingUtils-0.4/SweaveListingUtils/inst/doc/AllClass.tex | 2 SweaveListingUtils-0.4/SweaveListingUtils/inst/doc/BinomParam.tex | 2 SweaveListingUtils-0.4/SweaveListingUtils/inst/doc/ExampleSweaveListingUtils.Rnw | 33 SweaveListingUtils-0.4/SweaveListingUtils/inst/doc/ExampleSweaveListingUtils.pdf |binary SweaveListingUtils-0.4/SweaveListingUtils/inst/doc/altPrep.tex | 2 SweaveListingUtils-0.4/SweaveListingUtils/inst/doc/locChange.tex | 2 SweaveListingUtils-0.4/SweaveListingUtils/inst/doc/preamble.tex | 4 SweaveListingUtils-0.4/SweaveListingUtils/inst/doc/preamble2.tex | 14 SweaveListingUtils-0.4/SweaveListingUtils/inst/doc/reqdistr.tex | 2 SweaveListingUtils-0.4/SweaveListingUtils/inst/try/algorithm2e.sty |only SweaveListingUtils-0.4/SweaveListingUtils/inst/try/fancyhdr.sty |only SweaveListingUtils-0.4/SweaveListingUtils/inst/try/lastpage.sty |only SweaveListingUtils-0.4/SweaveListingUtils/inst/try/test.Rnw |only SweaveListingUtils-0.4/SweaveListingUtils/inst/try/try.Rtex | 6 SweaveListingUtils-0.4/SweaveListingUtils/inst/try/try.tex | 555 ++++++++++ SweaveListingUtils-0.4/SweaveListingUtils/inst/try/try2.Rnw |only SweaveListingUtils-0.4/SweaveListingUtils/inst/try/try2.tex |only SweaveListingUtils-0.4/SweaveListingUtils/inst/try/try_Hausman.tex |only SweaveListingUtils-0.4/SweaveListingUtils/inst/try/try_Hausmann.Rnw |only SweaveListingUtils-0.4/SweaveListingUtils/man/0SweaveListingUtils-package.Rd | 44 SweaveListingUtils-0.4/SweaveListingUtils/man/SweaveListingOptions.Rd | 24 SweaveListingUtils-0.4/SweaveListingUtils/man/SweaveListingPreparations.Rd | 13 SweaveListingUtils-0.4/SweaveListingUtils/man/copySourceFromRForge.Rd | 8 SweaveListingUtils-0.4/SweaveListingUtils/man/library.Rd | 9 SweaveListingUtils-0.4/SweaveListingUtils/man/lstset.Rd | 67 - SweaveListingUtils-0.4/SweaveListingUtils/man/setToBeDefinedPkgs.Rd | 2 SweaveListingUtils-0.4/SweaveListingUtils/tests |only 45 files changed, 1029 insertions(+), 415 deletions(-)
More information about SweaveListingUtils at CRAN
Permanent link
Author: Dominick Samperi
Diff between RcppTemplate versions 5.2 dated 2006-11-28 and 6.0 dated 2009-11-03
Title: Demo Package for Rcpp R/C++ Object Mapping and Library
Description: The Rcpp class library enables C++ to speak the language
of R. The library maps the most commonly used R data structures
to C++ classes. This includes vectors, matrices, factors,
dates, data frames, time series, and functions. R can call C++
functions, and C++ objects can call R functions, and the
parameters and return values can be of any of the types just
mentioned. This package serves two roles: 1. it serves as a
demo package for Rcpp, and 2. it serves as a template for the
creation of new packages that use the Rcpp library (and also
for packages that do not). An important goal of the library is
to support the creation of high-performance packages that do
heavy computations on large data sets where a hybrid R/C++
strategy is the best fit. See the document RcppDoc.pdf for more
information.
RcppTemplate-5.2/RcppTemplate/INDEX |only
RcppTemplate-5.2/RcppTemplate/R/RcppTemplateVersion.R |only
RcppTemplate-5.2/RcppTemplate/RcppSrc/LICENSE-Rcpp.txt |only
RcppTemplate-5.2/RcppTemplate/demo/ReadRcppAPI.R |only
RcppTemplate-5.2/RcppTemplate/demo/SineCurve.R |only
RcppTemplate-5.2/RcppTemplate/inst/doc/MakeWinBin.bat |only
RcppTemplate-5.2/RcppTemplate/inst/doc/RcppAPI.Rnw |only
RcppTemplate-5.2/RcppTemplate/inst/doc/RcppAPI.pdf |only
RcppTemplate-5.2/RcppTemplate/man/RcppTemplateDemo.Rd |only
RcppTemplate-5.2/RcppTemplate/man/RcppTemplateVersion.Rd |only
RcppTemplate-5.2/RcppTemplate/src/Makefile.win |only
RcppTemplate-6.0/RcppTemplate/.test |only
RcppTemplate-6.0/RcppTemplate/DESCRIPTION | 34
RcppTemplate-6.0/RcppTemplate/NAMESPACE | 13
RcppTemplate-6.0/RcppTemplate/NEWS |only
RcppTemplate-6.0/RcppTemplate/R/DateNum.R |only
RcppTemplate-6.0/RcppTemplate/R/RcppDocs.R |only
RcppTemplate-6.0/RcppTemplate/R/RcppExample.R | 9
RcppTemplate-6.0/RcppTemplate/R/zzz.R | 33
RcppTemplate-6.0/RcppTemplate/RcppSrc/Makefile | 9
RcppTemplate-6.0/RcppTemplate/RcppSrc/Makefile.win | 3
RcppTemplate-6.0/RcppTemplate/RcppSrc/Rcpp.cpp | 1637 +++-
RcppTemplate-6.0/RcppTemplate/RcppSrc/Rcpp.hpp | 1121 ++-
RcppTemplate-6.0/RcppTemplate/cleanup | 2
RcppTemplate-6.0/RcppTemplate/cleanup.win |only
RcppTemplate-6.0/RcppTemplate/configure | 5118 ++++++++++----
RcppTemplate-6.0/RcppTemplate/configure.in | 39
RcppTemplate-6.0/RcppTemplate/configure.win | 12
RcppTemplate-6.0/RcppTemplate/demo/00Index | 3
RcppTemplate-6.0/RcppTemplate/demo/Peacock.R |only
RcppTemplate-6.0/RcppTemplate/inst/LICENSE-Rcpp.txt | 27
RcppTemplate-6.0/RcppTemplate/inst/LICENSE.txt |only
RcppTemplate-6.0/RcppTemplate/inst/datasets |only
RcppTemplate-6.0/RcppTemplate/inst/doc/Makefile |only
RcppTemplate-6.0/RcppTemplate/inst/doc/QuantLib |only
RcppTemplate-6.0/RcppTemplate/inst/doc/QuickReference.txt |only
RcppTemplate-6.0/RcppTemplate/inst/doc/RcppDoc.Rnw |only
RcppTemplate-6.0/RcppTemplate/inst/doc/RcppDoc.pdf |only
RcppTemplate-6.0/RcppTemplate/inst/images |only
RcppTemplate-6.0/RcppTemplate/inst/libs |only
RcppTemplate-6.0/RcppTemplate/libs |only
RcppTemplate-6.0/RcppTemplate/man/DateNum.Rd |only
RcppTemplate-6.0/RcppTemplate/man/RcppDocs.Rd |only
RcppTemplate-6.0/RcppTemplate/man/RcppExample.Rd | 130
RcppTemplate-6.0/RcppTemplate/man/exam.Rd |only
RcppTemplate-6.0/RcppTemplate/src/Makevars |only
RcppTemplate-6.0/RcppTemplate/src/Makevars.in | 15
RcppTemplate-6.0/RcppTemplate/src/Makevars.win |only
RcppTemplate-6.0/RcppTemplate/src/RcppExample.cpp | 794 +-
RcppTemplate-6.0/RcppTemplate/src/config.hpp |only
RcppTemplate-6.0/RcppTemplate/src/config.hpp.in |only
51 files changed, 6727 insertions(+), 2272 deletions(-)
Author: Henrik Bengtsson
Diff between R.filesets versions 0.5.3 dated 2009-08-14 and 0.6.5 dated 2009-11-03
Title: Easy handling of and access to files organized in structured
directories
Description: A file set refers to a set of files located in one or more
directories on the file system. This package provides classes
and methods to locate, setup, subset, navigate and iterative
suchs sets. The API is designed such that these classes can be
subsetted to provide for instance a richer API for special file
formats. Moreover, a specific name format is defined such that
filenames and directories can be considered to have fullnames
which consists of a name followed by comma-separated tags.
This adds additional flexibility to identify file sets and
individual files. NOTE: This package's API should be
considered to be in an beta stage. Its main purpose is
currently to support the aroma.* packages, where it is one of
the main core components; if you decide to build on top of this
package, please contact the author first.
R.filesets-0.5.3/R.filesets/man/fromFiles.GenericDataFileSet.Rd |only
R.filesets-0.5.3/R.filesets/man/getFullName.GenericDataFile.Rd |only
R.filesets-0.5.3/R.filesets/man/getFullName.GenericDataFileSet.Rd |only
R.filesets-0.5.3/R.filesets/man/getName.GenericDataFile.Rd |only
R.filesets-0.5.3/R.filesets/man/getName.GenericDataFileSet.Rd |only
R.filesets-0.5.3/R.filesets/man/getTags.GenericDataFile.Rd |only
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R.filesets-0.5.3/R.filesets/man/setTags.GenericDataFileSet.Rd |only
R.filesets-0.6.5/R.filesets/DESCRIPTION | 16
R.filesets-0.6.5/R.filesets/R/999.NonDocumentedObjects.R | 2
R.filesets-0.6.5/R.filesets/R/FullNameInterface.R |only
R.filesets-0.6.5/R.filesets/R/GenericDataFile.R | 242 ----
R.filesets-0.6.5/R.filesets/R/GenericDataFileSet.R | 530 +++-------
R.filesets-0.6.5/R.filesets/R/GenericTabularFile.R | 16
R.filesets-0.6.5/R.filesets/R/TabularTextFile.R | 19
R.filesets-0.6.5/R.filesets/incl/999.missingdocs.txt |only
R.filesets-0.6.5/R.filesets/incl/FullNameInterface.Rex |only
R.filesets-0.6.5/R.filesets/inst/NEWS | 45
R.filesets-0.6.5/R.filesets/man/FullNameInterface.Rd |only
R.filesets-0.6.5/R.filesets/man/GenericDataFile.Rd | 23
R.filesets-0.6.5/R.filesets/man/GenericDataFileSet.Rd | 21
R.filesets-0.6.5/R.filesets/man/GenericTabularFileSet.Rd | 13
R.filesets-0.6.5/R.filesets/man/Non-documented_objects.Rd | 69 +
R.filesets-0.6.5/R.filesets/man/R.filesets-package.Rd | 2
R.filesets-0.6.5/R.filesets/man/TabularTextFileSet.Rd | 15
R.filesets-0.6.5/R.filesets/man/byPath.GenericDataFileSet.Rd |only
R.filesets-0.6.5/R.filesets/man/getAlias.GenericDataFileSet.Rd | 2
R.filesets-0.6.5/R.filesets/man/getDefaultFullName.FullNameInterface.Rd |only
R.filesets-0.6.5/R.filesets/man/getDefaultFullName.GenericDataFile.Rd |only
R.filesets-0.6.5/R.filesets/man/getDefaultFullName.GenericDataFileSet.Rd |only
R.filesets-0.6.5/R.filesets/man/getFullName.FullNameInterface.Rd |only
R.filesets-0.6.5/R.filesets/man/getName.FullNameInterface.Rd |only
R.filesets-0.6.5/R.filesets/man/getTags.FullNameInterface.Rd |only
R.filesets-0.6.5/R.filesets/man/setAlias.GenericDataFileSet.Rd | 2
R.filesets-0.6.5/R.filesets/man/setTags.FullNameInterface.Rd |only
35 files changed, 422 insertions(+), 595 deletions(-)
Author: Ben Goodrich
Title: Factor Analysis in R
Description: This package estimates factor analysis models using a
genetic algorithm, which permits a general mechanism for
restricted optimization with arbitrary restrictions that are
chosen at run time with the help of a GUI. Importantly,
inequality restrictions can be imposed on functions of multiple
parameters, which provides a new avenues for testing and
generating theories with factor analysis models. This package
also includes an entirely new estimator of the common factor
analysis model called semi-exploratory factor analysis, which
is a general alternative to exploratory and confirmatory factor
analysis. Finally, this package integrates a lot of other
packages that estimate sample covariance matrices and thus
provides a lot of alternatives to the traditional sample
covariance calculation. Note that you need to have the Gtk run
time library installed on your system to use this package; see
the URL below for detailed installation instructions. Most
users would only need to understand the first twenty-four pages
of the PDF manual.
Diff between FAiR versions 0.4-4 dated 2009-01-12 and 0.4-5 dated 2009-11-03
DESCRIPTION | 35 + R/FAiR.R | 31 - inst/doc/FAiR.pdf | 889 +++++++++++++++++++++++------------------------- man/summary.FA-class.Rd | 1 4 files changed, 486 insertions(+), 470 deletions(-)
Author: Doug McIlroy. Packaged for R by Ray Brownrigg and Thomas P
Minka, transition to Plan 9 codebase by Roger Bivand.
Title: Map Projections
Description: Converts latitude/longitude into projected coordinates.
Diff between mapproj versions 1.1-7.2 dated 2008-08-06 and 1.1-8.2 dated 2009-11-03
mapproj-1.1-7.2/mapproj/src/doug |only mapproj-1.1-8.2/mapproj/DESCRIPTION | 23 +++++++------ mapproj-1.1-8.2/mapproj/LICENSE |only mapproj-1.1-8.2/mapproj/inst |only mapproj-1.1-8.2/mapproj/man/mapproject.Rd | 31 +++++++++++++++-- mapproj-1.1-8.2/mapproj/src/aitoff.c | 12 ++---- mapproj-1.1-8.2/mapproj/src/albers.c | 14 ++----- mapproj-1.1-8.2/mapproj/src/azequalarea.c | 9 +---- mapproj-1.1-8.2/mapproj/src/azequidist.c | 9 +---- mapproj-1.1-8.2/mapproj/src/bicentric.c | 9 +---- mapproj-1.1-8.2/mapproj/src/bonne.c | 11 +----- mapproj-1.1-8.2/mapproj/src/ccubrt.c | 9 +---- mapproj-1.1-8.2/mapproj/src/complex.c | 14 ++----- mapproj-1.1-8.2/mapproj/src/conic.c | 9 +---- mapproj-1.1-8.2/mapproj/src/cubrt.c | 9 +---- mapproj-1.1-8.2/mapproj/src/cuts.c | 22 +++++++----- mapproj-1.1-8.2/mapproj/src/cylequalarea.c | 9 +---- mapproj-1.1-8.2/mapproj/src/cylindrical.c | 9 +---- mapproj-1.1-8.2/mapproj/src/elco2.c | 9 +---- mapproj-1.1-8.2/mapproj/src/elliptic.c | 21 +++-------- mapproj-1.1-8.2/mapproj/src/fisheye.c | 9 +---- mapproj-1.1-8.2/mapproj/src/gall.c | 9 +---- mapproj-1.1-8.2/mapproj/src/gilbert.c | 12 ++---- mapproj-1.1-8.2/mapproj/src/guyou.c | 9 +---- mapproj-1.1-8.2/mapproj/src/harrison.c | 9 +---- mapproj-1.1-8.2/mapproj/src/hex.c | 51 +++++++++++++---------------- mapproj-1.1-8.2/mapproj/src/homing.c | 21 ++++++----- mapproj-1.1-8.2/mapproj/src/lagrange.c | 11 +----- mapproj-1.1-8.2/mapproj/src/lambert.c | 26 +++----------- mapproj-1.1-8.2/mapproj/src/laue.c | 9 +---- mapproj-1.1-8.2/mapproj/src/lune.c | 9 +---- mapproj-1.1-8.2/mapproj/src/map.h | 27 +++++++-------- mapproj-1.1-8.2/mapproj/src/mercator.c | 9 +---- mapproj-1.1-8.2/mapproj/src/mollweide.c | 9 +---- mapproj-1.1-8.2/mapproj/src/newyorker.c | 9 +---- mapproj-1.1-8.2/mapproj/src/orthographic.c | 11 +----- mapproj-1.1-8.2/mapproj/src/perspective.c | 21 ++++------- mapproj-1.1-8.2/mapproj/src/polyconic.c | 9 +---- mapproj-1.1-8.2/mapproj/src/rectangular.c | 9 +---- mapproj-1.1-8.2/mapproj/src/simpleconic.c | 9 +---- mapproj-1.1-8.2/mapproj/src/sinusoidal.c | 9 +---- mapproj-1.1-8.2/mapproj/src/tetra.c | 30 ++++++----------- mapproj-1.1-8.2/mapproj/src/trapezoidal.c | 9 +---- mapproj-1.1-8.2/mapproj/src/twocirc.c | 9 +---- mapproj-1.1-8.2/mapproj/src/zcoord.c | 36 +++++++++----------- 45 files changed, 225 insertions(+), 385 deletions(-)