Author: Roger Bivand
Diff between spdep versions 0.4-50 dated 2009-10-19 and 0.4-52 dated 2009-11-05
Title: Spatial dependence: weighting schemes, statistics and models
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by
distance and tesselations, for summarising these objects, and
for permitting their use in spatial data analysis, including
regional aggregation by minimum spanning tree; a collection of
tests for spatial autocorrelation, including global Moran's I,
APLE, Geary's C, Hubert/Mantel general cross product statistic,
Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G
and multicoloured join count statistics, local Moran's I and
Getis/Ord G, saddlepoint approximations and exact tests for
global and local Moran's I; and functions for estimating
spatial simultaneous autoregressive (SAR) lag and error models,
impact measures for lag models, weighted and unweighted SAR and
CAR spatial regression models, semi-parametric and Moran
eigenvector spatial filtering, GM SAR error models, and
generalized spatial two stage least squares models.
ChangeLog | 1287 ++++++++-------------------------
DESCRIPTION | 10
R/error.spsarlm.R | 6
R/impacts.R | 129 +++
R/nblag.R | 2
R/read.gwt2nb.R | 22
R/tri2nb.R | 17
inst/ChangeLog | 1287 ++++++++-------------------------
inst/doc/CO69.pdf |binary
inst/doc/sids.pdf |binary
inst/etc/shapes/columbusRegression.txt |only
man/impacts.sarlm.Rd | 25
man/invIrM.Rd | 2
man/joincount.multi.Rd | 4
man/nb2blocknb.Rd | 2
man/read.gwt2nb.Rd | 8
man/tri2nb.Rd | 3
17 files changed, 841 insertions(+), 1963 deletions(-)
Author: Carsten F. Dormann and Bernd Gruber, with additional code from
Mariano Devoto, Jochen Fruend, Jose Iriondo and Diego Vazquez,
also based on C-code developed by Nils Bluethgen and by Miguel
Rodriguez-Girones.
Title: Visualising bipartite networks and calculating some ecological
indices.
Description: Bipartite provides functions to viualise webs and
calculate a series of indices commonly used to describe pattern
in ecological webs. It focusses on webs consisting of only two
trophic levels, e.g. pollination webs or predator-prey-webs.
Visualisation is important to get an idea of what we are
actually looking at, while the indices summarise different
aspects of the webs topology.
Diff between bipartite versions 1.02 dated 2009-09-12 and 1.03 dated 2009-11-05
bipartite-1.02/bipartite/Wishlist.txt |only bipartite-1.03/bipartite/.hg/branch.cache | 4 +- bipartite-1.03/bipartite/.hg/dirstate |binary bipartite-1.03/bipartite/.hg/store/00changelog.i |binary bipartite-1.03/bipartite/.hg/store/00manifest.i |binary bipartite-1.03/bipartite/.hg/store/data/_d_e_s_c_r_i_p_t_i_o_n.i |binary bipartite-1.03/bipartite/.hg/store/data/_r/_c.score._r.i |binary bipartite-1.03/bipartite/.hg/store/data/_r/_h2fun._r.i |binary bipartite-1.03/bipartite/.hg/store/data/_r/_p_a_c.r.i |only bipartite-1.03/bipartite/.hg/store/data/_r/bipartite-package._rd.i |binary bipartite-1.03/bipartite/.hg/store/data/_r/degreedistr._r.i |binary bipartite-1.03/bipartite/.hg/store/data/_r/dfun._r.i |binary bipartite-1.03/bipartite/.hg/store/data/_r/discrepancy.r.i |binary bipartite-1.03/bipartite/.hg/store/data/_r/nested.r.i |only bipartite-1.03/bipartite/.hg/store/data/_r/networklevel._r.i |binary bipartite-1.03/bipartite/.hg/store/data/_r/nullmodel.r.i |only bipartite-1.03/bipartite/.hg/store/data/_r/plotweb._r.i |binary bipartite-1.03/bipartite/.hg/store/data/_r/robustness.r.i |binary bipartite-1.03/bipartite/.hg/store/data/_r/slope.bipartite._r.i |binary bipartite-1.03/bipartite/.hg/store/data/_r/specieslevel._r.i |binary bipartite-1.03/bipartite/.hg/store/data/_wishlist.txt.i |binary bipartite-1.03/bipartite/.hg/store/data/man/_p_a_c.rd.i |only bipartite-1.03/bipartite/.hg/store/data/man/bipartite-package._rd.i |binary bipartite-1.03/bipartite/.hg/store/data/man/compart._rd.i |binary bipartite-1.03/bipartite/.hg/store/data/man/degreedistr._rd.i |binary bipartite-1.03/bipartite/.hg/store/data/man/dfun._rd.i |binary bipartite-1.03/bipartite/.hg/store/data/man/nested._rd.i |only bipartite-1.03/bipartite/.hg/store/data/man/networklevel._rd.i |binary bipartite-1.03/bipartite/.hg/store/data/man/nullmodel.rd.i |only bipartite-1.03/bipartite/.hg/store/data/man/plotweb._rd.i |binary bipartite-1.03/bipartite/.hg/store/data/man/specieslevel._rd.i |binary bipartite-1.03/bipartite/.hg/store/data/matrix.cpp.i |only bipartite-1.03/bipartite/.hg/store/data/src/bipartite.dll.d |binary bipartite-1.03/bipartite/.hg/store/data/src/bipartite.dll.i |binary bipartite-1.03/bipartite/.hg/store/data/src/bipartite__res.o.i |binary bipartite-1.03/bipartite/.hg/store/data/src/bmn5.o.i |binary bipartite-1.03/bipartite/.hg/store/undo |binary bipartite-1.03/bipartite/.hg/undo.dirstate |binary bipartite-1.03/bipartite/DESCRIPTION | 8 ++--- bipartite-1.03/bipartite/R/V.ratio.R | 11 ++++-- bipartite-1.03/bipartite/R/networklevel.R | 5 +-- bipartite-1.03/bipartite/man/bipartite-package.Rd | 12 +++++-- bipartite-1.03/bipartite/man/networklevel.Rd | 16 +++++++--- 43 files changed, 37 insertions(+), 19 deletions(-)
Author: Mario Hasler
Title: Simultaneous Comparisons for Multiple Endpoints
Description: Simultaneous tests and confidence intervals for one-way
experimental designs with one or many normally distributed,
primary response variables (endpoints). The procedure of Hasler
(2009) is applied for differences or ratios of means. Various
contrasts can be chosen, unbalanced sample sizes are allowed as
well as heterogeneous covariance matrices.
Diff between SimComp versions 1.4.2 dated 2009-10-22 and 1.4.3 dated 2009-11-05
DESCRIPTION | 9 +++++---- data |only man/SimCiDiff.Rd | 41 ++++++++++++++++++++++++++++------------- man/SimCiRat.Rd | 23 ++++++++++++++++++++--- man/SimComp-package.Rd | 44 ++++++++++++++++++++++++++++---------------- man/SimTestDiff.Rd | 22 +++++++++++++++++++--- man/SimTestRat.Rd | 22 +++++++++++++++++++--- man/coagulation.Rd |only 8 files changed, 119 insertions(+), 42 deletions(-)
Author: originally written by Andrew Gelman
Diff between R2WinBUGS versions 2.1-14 dated 2009-04-14 and 2.1-15 dated 2009-11-05
Title: Running WinBUGS and OpenBUGS from R / S-PLUS
Description: Using this package, it is possible to call a BUGS model,
summarize inferences and convergence in a table and graph, and
save the simulations in arrays for easy access in R / S-PLUS.
In S-PLUS, the openbugs functionality and the windows emulation
functionality is not yet available.
DESCRIPTION | 8 ++---
R/bugs.R | 3 +-
R/bugs.script.R | 2 -
R/bugs.update.settings.R | 64 ++++++++++++++++++++++++-----------------------
R/openbugs.R | 3 +-
R/write.model.R | 7 +++--
inst/NEWS | 7 +++++
inst/doc/R2WinBUGS.pdf | 6 ++--
man/openbugs.Rd | 3 +-
9 files changed, 59 insertions(+), 44 deletions(-)
Author: Yves Aragon, Thibault Laurent, Lauriane Robidou, Anne
Ruiz-Gazen, Christine Thomas-Agnan
Title: Interactive exploratory spatial data analysis
Description: GeoXp is a tool for researchers in spatial statistics,
spatial econometrics, geography, ecology etc allowing to link
dynamically statistical plots with elementary maps. This
coupling consists in the fact that the selection of a zone on
the map results in the automatic highlighting of the
corresponding points on the statistical graph or reversely the
selection of a portion of the graph results in the automatic
highlighting of the corresponding points on the map. GeoXp
includes tools from different areas of spatial statistics
including geostatistics as well as spatial econometrics and
point processes. Besides elementary plots like boxplots,
histograms or simple scatterplos, GeoXp also couples with maps
Moran scatterplots, variogram cloud, Lorentz Curves,...In order
to make the most of the multidimensionality of the data, GeoXp
includes some dimension reduction techniques such as PCA.
Diff between GeoXp versions 1.3 dated 2008-10-12 and 1.4 dated 2009-11-05
GeoXp-1.3/GeoXp/inst/doc/howusegeoxp.pdf |only GeoXp-1.3/GeoXp/inst/vectors |only GeoXp-1.3/GeoXp/man/choix.bubble.rd |only GeoXp-1.3/GeoXp/man/choix.couleur.rd |only GeoXp-1.3/GeoXp/man/choixvarfunc.rd |only GeoXp-1.4/GeoXp/DESCRIPTION | 44 ++++++++++---- GeoXp-1.4/GeoXp/R/angleplotmap.R | 6 +- GeoXp-1.4/GeoXp/R/barmap.R | 4 - GeoXp-1.4/GeoXp/R/barnbmap.r | 4 - GeoXp-1.4/GeoXp/R/boxplotmap.R | 4 - GeoXp-1.4/GeoXp/R/carte.R | 72 +++++++++++++++++++----- GeoXp-1.4/GeoXp/R/choix.bubble.r | 26 +++++++- GeoXp-1.4/GeoXp/R/clustermap.R | 4 - GeoXp-1.4/GeoXp/R/dbledensitymap.R | 6 +- GeoXp-1.4/GeoXp/R/dblehistomap.R | 4 - GeoXp-1.4/GeoXp/R/densitymap.R | 4 - GeoXp-1.4/GeoXp/R/driftmap.R | 2 GeoXp-1.4/GeoXp/R/ginimap.R | 4 - GeoXp-1.4/GeoXp/R/graphique.R | 58 ++++++++++++++++--- GeoXp-1.4/GeoXp/R/histnbmap.r | 4 - GeoXp-1.4/GeoXp/R/histobarmap.R | 4 - GeoXp-1.4/GeoXp/R/histomap.R | 4 - GeoXp-1.4/GeoXp/R/misolationmap.r |only GeoXp-1.4/GeoXp/R/moranplotmap.R | 6 +- GeoXp-1.4/GeoXp/R/mvariocloudmap.r |only GeoXp-1.4/GeoXp/R/neighbourmap.R | 4 - GeoXp-1.4/GeoXp/R/pcamap.R | 4 - GeoXp-1.4/GeoXp/R/plot3dmap.r | 4 - GeoXp-1.4/GeoXp/R/polyboxplotmap.R | 4 - GeoXp-1.4/GeoXp/R/scattermap.R | 4 - GeoXp-1.4/GeoXp/R/slider1.R | 5 + GeoXp-1.4/GeoXp/R/variocloudmap.R | 6 +- GeoXp-1.4/GeoXp/inst/doc/Fig1.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig10.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig11.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig12.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig13.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig14.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig15.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig16.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig17.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig18.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig19.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig2.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig20.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig21.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig22.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig3.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig4.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig5.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig6.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig7.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig8.ps |only GeoXp-1.4/GeoXp/inst/doc/Fig9.ps |only GeoXp-1.4/GeoXp/inst/doc/Sweave.sty |only GeoXp-1.4/GeoXp/inst/doc/presentation_geoxp.dvi |only GeoXp-1.4/GeoXp/inst/doc/presentation_geoxp.pdf |only GeoXp-1.4/GeoXp/inst/doc/presentation_geoxp.rnw |only GeoXp-1.4/GeoXp/inst/shapes |only GeoXp-1.4/GeoXp/man/GeoXp-package.Rd | 50 +++++++--------- GeoXp-1.4/GeoXp/man/angleplotmap.Rd | 46 +++++++-------- GeoXp-1.4/GeoXp/man/barmap.Rd | 23 +++---- GeoXp-1.4/GeoXp/man/barnbmap.rd | 19 +++--- GeoXp-1.4/GeoXp/man/boxplotmap.Rd | 23 +++---- GeoXp-1.4/GeoXp/man/carte.Rd | 20 +++--- GeoXp-1.4/GeoXp/man/choix.bubble.Rd |only GeoXp-1.4/GeoXp/man/choix.couleur.Rd |only GeoXp-1.4/GeoXp/man/choixvarfunc.Rd |only GeoXp-1.4/GeoXp/man/clustermap.Rd | 23 +++---- GeoXp-1.4/GeoXp/man/dbledensitymap.Rd | 29 +++++---- GeoXp-1.4/GeoXp/man/dblehistomap.Rd | 27 ++++----- GeoXp-1.4/GeoXp/man/densitymap.Rd | 31 +++++----- GeoXp-1.4/GeoXp/man/distchi2.Rd | 18 +++--- GeoXp-1.4/GeoXp/man/driftmap.Rd | 29 ++++----- GeoXp-1.4/GeoXp/man/genpca.Rd | 56 +++++++++--------- GeoXp-1.4/GeoXp/man/gini.Rd | 14 ++-- GeoXp-1.4/GeoXp/man/ginimap.Rd | 23 +++---- GeoXp-1.4/GeoXp/man/graphique.Rd | 14 ++-- GeoXp-1.4/GeoXp/man/histnbmap.rd | 21 +++---- GeoXp-1.4/GeoXp/man/histobarmap.Rd | 27 ++++----- GeoXp-1.4/GeoXp/man/histomap.Rd | 29 +++++---- GeoXp-1.4/GeoXp/man/immob.Rd | 4 - GeoXp-1.4/GeoXp/man/makeneighborsw.Rd | 32 +++++----- GeoXp-1.4/GeoXp/man/misolationmap.rd |only GeoXp-1.4/GeoXp/man/moranplotmap.Rd | 41 ++++++------- GeoXp-1.4/GeoXp/man/mvariocloudmap.rd |only GeoXp-1.4/GeoXp/man/neighbourmap.Rd | 28 +++++---- GeoXp-1.4/GeoXp/man/nonormmoran.Rd | 30 +++++----- GeoXp-1.4/GeoXp/man/normw.Rd | 10 +-- GeoXp-1.4/GeoXp/man/pcamap.Rd | 48 ++++++++-------- GeoXp-1.4/GeoXp/man/plot3dmap.rd | 30 +++++----- GeoXp-1.4/GeoXp/man/polyboxplotmap.Rd | 24 ++++---- GeoXp-1.4/GeoXp/man/polylist2list.Rd | 14 ++-- GeoXp-1.4/GeoXp/man/rotation.Rd | 16 ++--- GeoXp-1.4/GeoXp/man/scattermap.Rd | 34 +++++------ GeoXp-1.4/GeoXp/man/selectgraph.Rd | 4 - GeoXp-1.4/GeoXp/man/selectmap.Rd | 12 ++-- GeoXp-1.4/GeoXp/man/selectstat.Rd | 18 +++--- GeoXp-1.4/GeoXp/man/slider1.Rd | 2 GeoXp-1.4/GeoXp/man/slider2.Rd | 2 GeoXp-1.4/GeoXp/man/spdf2list.Rd | 18 ++---- GeoXp-1.4/GeoXp/man/variocloudmap.Rd | 54 +++++++++--------- 102 files changed, 671 insertions(+), 563 deletions(-)
Author: Ulrike Groemping
Title: Full factorials, orthogonal arrays and base utilities for DoE
packages
Description: This package creates full factorial experimental designs
and designs based on orthogonal arrays for (industrial)
experiments. Additionally, it provides some utility functions
used also by other DoE packages.
Diff between DoE.base versions 0.9-6 dated 2009-11-05 and 0.9-7 dated 2009-11-05
DESCRIPTION | 8 +++---- NAMESPACE | 2 - R/lm.design.R | 26 ++++------------------- inst/NEWS | 3 ++ man/lm.design.Rd | 17 +++++++++++++-- tests/test_qua.design.Rout.save | 45 ++++++++++++++++++---------------------- 6 files changed, 49 insertions(+), 52 deletions(-)
Author: Carla Moreira, Jacobo de U\eqn{\mbox{\textasciitilde}}{~}na-
\eqn{\mbox{\textasciitilde}}{'}Alvarez and Rosa Crujeiras
Title: Doubly truncated data analysis
Description: This package implements different algorithms for analyzing
randomly truncated data, one-sided and two-sided (i.e. doubly)
truncated data.
Diff between DTDA versions 1.1 dated 2009-09-21 and 1.2-0 dated 2009-11-05
DESCRIPTION | 9 R/efron.petrosian.R | 634 ++++++++++++++++- R/lynden.R | 764 ++++++++++++++++++++- R/shen.R | 1731 +++++++++++++++++++++++++++++++++++++++++-------- man/DTDA-package.Rd | 14 man/efron.petrosian.Rd | 14 man/lynden.Rd | 15 man/shen.Rd | 10 8 files changed, 2770 insertions(+), 421 deletions(-)
Author: Roger Koenker
Diff between quantreg versions 4.43 dated 2009-10-19 and 4.44 dated 2009-11-05
Title: Quantile Regression
Description: Quantile regression and related methods.
DESCRIPTION | 6 +++---
R/boot.R | 2 +-
R/table.R | 2 +-
inst/ChangeLog | 8 ++++++++
inst/doc/Rplots.pdf | 4 ++--
inst/doc/rq.pdf |binary
6 files changed, 15 insertions(+), 7 deletions(-)
Author: David Meyer and Christian Buchta
Title: Distance and Similarity Measures
Description: Provides an extensible framework for the effcient
calculation of auto- and cross-proximities, along with
implementations of the most popular ones.
Diff between proxy versions 0.4-4 dated 2009-10-13 and 0.4-5 dated 2009-11-05
DESCRIPTION | 8 ++++---- R/dissimilarities.R | 6 +++--- R/similarities.R | 10 +++++----- inst/doc/overview.pdf |binary 4 files changed, 12 insertions(+), 12 deletions(-)
Author: Dan Kelley
Diff between oce versions 0.1-79 dated 2009-10-26 and 0.1-80 dated 2009-11-05
Title: Analysis of Oceanographic data
Description: Supports the analysis of Oceanographic data, including ADP
measurements, CTD measurements, sectional data, sea-level
timeseries, coastline files, etc. Provides functions for
calculating seawater properties such as potential temperature
and density, as well as derived properties such as buoyancy
frequency and dynamic height.
DESCRIPTION | 8
NAMESPACE | 1
NEWS | 7
R/oce.R | 22 +
R/section.R | 78 ++--
R/sun.R |only
demo/TS.R | 5
inst/doc/oce.pdf | 789 +++++++++++++++++++++++--------------------------
man/adp.enu2other.Rd | 2
man/adv.enu2other.Rd | 7
man/oce.plot.sticks.Rd | 24 +
man/plot.section.Rd | 2
man/sun.angle.Rd |only
src/sunae.f |only
14 files changed, 486 insertions(+), 459 deletions(-)
Author: Seung W. Choi, with contributions from Laura E. Gibbons and
Paul K. Crane
Title: Logistic Regression Differential Item Functioning using IRT
Description: Analysis of Differential Item Functioning (DIF) for
dichotomous and polytomous items using an iterative hybrid of
(ordinal) logistic regression and item response theory (IRT).
Diff between lordif versions 0.1-2 dated 2009-10-14 and 0.1-3 dated 2009-11-05
DESCRIPTION | 8 ++++---- INDEX | 29 +++++++++++++++++++++++------ R/montecarlo.R | 26 +++++++++++++------------- R/plotDIF.R | 2 +- R/rundif.R | 8 ++++---- R/separate.R | 6 ++++-- data/Anxiety.rda |binary man/lordif-package.Rd | 4 ++-- 8 files changed, 51 insertions(+), 32 deletions(-)
Author: Christopher Brown
Title: Implements hash/associated arrays/dictionaries
Description: This package implements a data structure similar to hashes
in Perl and dictionaries in Python but with a purposefully R
flavor.
Diff between hash versions 1.0.2 dated 2009-10-12 and 1.0.3 dated 2009-11-05
ChangeLog | 6 ++++++ DESCRIPTION | 10 +++++----- R/format.R | 7 +++++-- R/values.R | 2 +- TODO | 5 +++-- man/hash-package.Rd | 6 +++--- 6 files changed, 23 insertions(+), 13 deletions(-)
Author: Daniel Adler
Diff between ff versions 2.1-0 dated 2009-11-03 and 2.1-1 dated 2009-11-05
Title: memory-efficient storage of large data on disk and fast access
functions
Description: The ff package provides data structures that are stored on
disk but behave (almost) as if they were in RAM by
transparently mapping only a section (pagesize) in main memory
- the effective virtual memory consumption per ff object. ff
supports R's standard atomic data types 'double', 'logical',
'raw' and 'integer' and non-standard atomic types boolean (1
bit), quad (2 bit unsigned), nibble (4 bit unsigned), byte (1
byte signed with NAs), ubyte (1 byte unsigned), short (2 byte
signed with NAs), ushort (2 byte unsigned), single (4 byte
float with NAs). For example 'quad' allows efficient storage of
genomic data as an 'A','T','G','C' factor. The unsigned types
support 'circular' arithmetic. There is also support for
close-to-atomic types 'factor', 'ordered', 'POSIXct', 'Date'
and custom close-to-atomic types. ff not only has native
C-support for vectors, matrices and arrays with flexible
dimorder (major column-order, major row-order and
generalizations for arrays). There is also a ffdf class not
unlike data.frames and import/export filters for csv files. ff
objects store raw data in binary flat files in native encoding,
and complement this with metadata stored in R as physical and
virtual attributes. ff objects have well-defined hybrid copying
semantics, which gives rise to certain performance improvements
through virtualization. ff objects can be stored and reopened
across R sessions. ff files can be shared by multiple ff R
objects (using different data en/de-coding schemes) in the same
process or from multiple R processes to exploit parallelism. A
wide choice of finalizer options allows to work with
'permanent' files as well as creating/removing 'temporary' ff
files completely transparent to the user. On certain
OS/Filesystem combinations, creating the ff files works without
notable delay thanks to using sparse file allocation. Several
access optimization techniques such as Hybrid Index
Preprocessing and Virtualization are implemented to achieve
good performance even with large datasets, for example virtual
matrix transpose without touching a single byte on disk.
Further, to reduce disk I/O, 'logicals' and non-standard data
types get stored native and compact on binary flat files i.e.
logicals take up exactly 2 bits to represent TRUE, FALSE and
NA. Beyond basic access functions, the ff package also provides
compatibility functions that facilitate writing code for ff and
ram objects and support for batch processing on ff objects
(e.g. as.ram, as.ff, ffapply). ff interfaces closely with
functionality from package 'bit': chunked looping, fast bit
operations and coercions between different objects that can
store subscript information ('bit', 'bitwhich', ff 'boolean',
ri range index, hi hybrid index). This allows to work
interactively with selections of large datasets and quickly
modify selection criteria. Further high-performance
enhancements can be made available upon request.
DESCRIPTION | 8 ++++----
R/ff.R | 5 +++++
man/filename.rd | 5 +++++
3 files changed, 14 insertions(+), 4 deletions(-)
Author: Anthony Albano
Diff between equate versions 0.1-0 dated 2009-11-01 and 0.1-1 dated 2009-11-05
Title: Traditional Methods for Test Score Equating
Description: The equate package contains functions for traditional
equating under both random groups and nonequivalent groups with
anchor test designs. Mean, linear, and equipercentile equating
are supported as are methods for univariate and bivariate
presmoothing of score distributions.
equate-0.1-0/equate/R/var.freqtab.R |only
equate-0.1-0/equate/man/print.equate.Rd |only
equate-0.1-0/equate/man/var.freqtab.Rd |only
equate-0.1-1/equate/COPYING |only
equate-0.1-1/equate/DESCRIPTION | 30 +++++-------
equate-0.1-1/equate/NAMESPACE | 4 -
equate-0.1-1/equate/NEWS |only
equate-0.1-1/equate/R/cov.freqtab.R |only
equate-0.1-1/equate/R/equate.R | 32 +++++++------
equate-0.1-1/equate/R/equate.eq.R | 59 ++++++++++++-------------
equate-0.1-1/equate/R/equate.ln.R | 35 ++++++++------
equate-0.1-1/equate/R/freqavg.R | 60 ++++++++++++-------------
equate-0.1-1/equate/R/freqtab.R | 17 +++++--
equate-0.1-1/equate/R/fx.R | 8 +--
equate-0.1-1/equate/R/kurt.freqtab.R | 5 --
equate-0.1-1/equate/R/loglinear.R | 44 +++++++++---------
equate-0.1-1/equate/R/mean.freqtab.R | 2
equate-0.1-1/equate/R/px.R | 10 ++--
equate-0.1-1/equate/R/se.boot.R | 36 +++++++++++----
equate-0.1-1/equate/R/se.ln.R | 10 +---
equate-0.1-1/equate/R/skew.freqtab.R | 5 --
equate-0.1-1/equate/R/synthetic.R | 49 +++++++++++---------
equate-0.1-1/equate/man/ACTmath.Rd | 2
equate-0.1-1/equate/man/KBneat.Rd | 3 -
equate-0.1-1/equate/man/casemod.Rd | 2
equate-0.1-1/equate/man/cov.freqtab.Rd |only
equate-0.1-1/equate/man/equate.Rd | 75 +++++++++++++-------------------
equate-0.1-1/equate/man/equate.eq.Rd | 44 ++++++------------
equate-0.1-1/equate/man/equate.ln.Rd | 40 +++++------------
equate-0.1-1/equate/man/freqavg.Rd | 15 ++----
equate-0.1-1/equate/man/freqbump.Rd | 10 +---
equate-0.1-1/equate/man/freqtab.Rd | 39 ++++++++++------
equate-0.1-1/equate/man/fx.Rd | 8 +--
equate-0.1-1/equate/man/kurt.freqtab.Rd | 10 +---
equate-0.1-1/equate/man/loglinear.Rd | 58 ++++++++++++++----------
equate-0.1-1/equate/man/mean.freqtab.Rd | 11 ++--
equate-0.1-1/equate/man/px.Rd | 8 +--
equate-0.1-1/equate/man/se.boot.Rd | 7 +-
equate-0.1-1/equate/man/se.eq.Rd | 2
equate-0.1-1/equate/man/se.ln.Rd | 14 ++---
equate-0.1-1/equate/man/skew.freqtab.Rd | 8 +--
equate-0.1-1/equate/man/synthetic.Rd | 38 ++++------------
42 files changed, 393 insertions(+), 407 deletions(-)
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.26 dated 2009-10-28 and 4.27 dated 2009-11-05
DESCRIPTION | 12 R/createGrid.R | 3 R/createModel.R | 22 + R/misc.R | 15 R/predictionFunction.R | 13 R/probFunction.R | 4 R/selection.R | 4 R/train.default.R | 2 inst/CHANGES | 7 inst/doc/caretMisc.pdf | 875 +++++++++++++++++++++----------------------- inst/doc/caretMisc.tex | 17 inst/doc/caretSelection.pdf | 664 ++++++++++++++++----------------- inst/doc/caretSelection.tex | 16 inst/doc/caretTrain.Rnw | 5 inst/doc/caretTrain.pdf |binary inst/doc/caretTrain.tex | 21 - inst/doc/caretVarImp.pdf |binary inst/doc/caretVarImp.tex | 16 man/train.Rd | 3 19 files changed, 877 insertions(+), 822 deletions(-)
Author: Gavin L. Simpson, Jari Oksanen
Title: Analogue and weighted averaging methods for palaeoecology
Description: Fits Modern Analogue Technique and Weighted Averaging
transfer function models for prediction of environmental data
from species data, and related methods used in palaeoecology.
Diff between analogue versions 0.6-21 dated 2009-11-03 and 0.6-22 dated 2009-11-05
DESCRIPTION | 10 +++++----- R/tran.R | 4 ++-- inst/ChangeLog | 6 ++++++ 3 files changed, 13 insertions(+), 7 deletions(-)
Author: Roger Koenker
Diff between SparseM versions 0.80 dated 2009-05-12 and 0.83 dated 2009-11-05
Title: Sparse Linear Algebra
Description: Basic linear algebra for sparse matrices
DESCRIPTION | 6 +++---
R/SparseM.R | 10 +++++-----
inst/ChangeLog | 8 ++++++++
inst/doc/Rplots.pdf | 32 ++++++++++++++++----------------
inst/doc/SparseM.pdf |binary
man/SparseM.ops.Rd | 4 +---
6 files changed, 33 insertions(+), 27 deletions(-)
Author: Nathan S. Watson-Haigh
Title: PCIT algorithm - Partial Correlation Coefficient with
Information Theory
Description: This package provides the necessary functions for
performing the Partial Correlation coefficient with Information
Theory (PCIT) algorithm developed by Reverter and Chan (2008).
The PCIT algorithm identifies meaningful correlations to define
edges in a weighted network. The algorithm can be applied to
any correlation-based network including but not limited to gene
co-expression networks.
Diff between PCIT versions 1.01-1 dated 2009-08-28 and 1.02-1 dated 2009-11-05
DESCRIPTION | 14 + R/PCIT.R | 265 +++++++++++++++++++++++++++--------- R/internal.R | 33 ---- data/PCIT.rda |binary demo/00Index | 2 demo/PCIT.R | 30 ++-- man/PCIT-package.Rd | 10 - man/clusteringCoefficient.Rd | 16 +- man/clusteringCoefficientPercent.Rd | 16 +- man/data.Rd | 17 +- man/defineTasks.Rd | 57 ++++--- man/idx.Rd |only man/idxInvert.Rd |only man/maxMatrixSize.Rd |only man/pcit.Rd | 19 +- man/pcitMemoryRequirements.Rd |only man/plotCorCoeff.Rd | 34 +++- 17 files changed, 346 insertions(+), 167 deletions(-)
Author: Ulrike Groemping
Title: Full factorials, orthogonal arrays and base utilities for DoE
packages
Description: This package creates full factorial experimental designs
and designs based on orthogonal arrays for (industrial)
experiments. Additionally, it provides some utility functions
used also by other DoE packages.
Diff between DoE.base versions 0.9-5 dated 2009-11-03 and 0.9-6 dated 2009-11-05
DESCRIPTION | 8 +++---- NAMESPACE | 2 - R/lm.design.R | 26 ++++++++++++++++++----- inst/NEWS | 8 +++++++ man/lm.design.Rd | 17 +-------------- tests/test_qua.design.Rout.save | 45 +++++++++++++++++++++------------------- 6 files changed, 60 insertions(+), 46 deletions(-)
Author: Bill Morphet
Title: Functions For Circular Spatial Data
Description: The package is a collection of functions for color
continuous high resolution images of circular spatial data,
circular kriging, and simulation of circular random fields.
Diff between CircSpatial versions 1.0 dated 2009-09-21 and 1.0-1 dated 2009-11-05
CircSpatial-1.0-1/CircSpatial/DESCRIPTION | 14 +++++------ CircSpatial-1.0-1/CircSpatial/R/KrigCRF.R | 2 - CircSpatial-1.0-1/CircSpatial/inst/CHANGES |only CircSpatial-1.0-1/CircSpatial/inst/README |only CircSpatial-1.0-1/CircSpatial/man/CircDataimage.Rd | 19 ++++++++++++--- CircSpatial-1.0-1/CircSpatial/man/CircSpatial-package.Rd | 2 - CircSpatial-1.0/CircSpatial/README |only 7 files changed, 25 insertions(+), 12 deletions(-)