Author: Vito M.R. Muggeo
Diff between segmented versions 0.2-5 dated 2009-10-26 and 0.2-6 dated 2009-11-06
Title: Segmented relationships in regression models
Description: Given a (generalized) linear model, segmented `updates'
the model by adding one or more segmented relationships.
Several variables with multiple breakpoints are allowed.
DESCRIPTION | 8 ++++----
R/broken.line.R | 5 +++--
R/confint.segmented.R | 12 ++++++++----
R/draw.history.R | 9 +--------
R/plot.segmented.R | 10 ++++++----
R/print.segmented.R | 6 +++---
R/print.summary.segmented.R | 21 +++++++++++++--------
R/segmented.lm.R | 1 +
R/slope.R | 16 ++++++++++------
R/summary.segmented.R | 41 ++++++++++++++++++++++++++++++++++-------
R/vcov.segmented.R |only
man/broken.line.Rd | 4 ++--
man/confint.segmented.Rd | 19 ++++++++++---------
man/segmented-package.Rd | 6 ++++--
man/segmented.Rd | 17 ++++++++++-------
man/slope.Rd | 32 +++++++++++++++++++++-----------
man/summary.segmented.Rd | 39 ++++++++++++++++++++++++++++++++-------
man/vcov.segmented.Rd |only
18 files changed, 162 insertions(+), 84 deletions(-)
Author: Graham Williams
Diff between rattle versions 2.5.2 dated 2009-11-04 and 2.5.3 dated 2009-11-06
Title: A graphical user interface for data mining in R using GTK
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab
and so available to the user as a script file or as an aide to
the user to interact directly with R itself. Rattle also
exports a number of utility functions and the graphical user
interface, invoked as rattle(), does not need to be run to
deploy these.
DESCRIPTION | 8 ++++----
NAMESPACE | 1 +
R/cluster.R | 30 +++++++++++++++++-------------
R/evaluate.R | 19 +++++++++++++++++--
R/execute.R | 10 +++++++++-
R/hclust.R | 6 +++---
R/kmeans.R | 6 +++---
R/model.R | 2 +-
R/rattle.R | 44 ++++++++++++++++++++++++++++++++++++--------
R/rpart.R | 4 ++--
R/survival.R | 49 +++++++++++++++++++++++++++++++++++++++++++------
R/textview.R | 26 ++++++++++++++++----------
R/transform.R | 5 +++--
inst/etc/rattle.glade | 49 +++++++++++++++++++++++++++++++++++--------------
man/internal.Rd | 2 ++
15 files changed, 192 insertions(+), 69 deletions(-)
Author: Hein Putter, Liesbeth de Wreede, Marta Fiocco
Title: Data preparation, estimation and prediction in multi-state
models
Description: Functions for data preparation, descriptives, hazard
estimation and prediction with Aalen-Johansen or simulation in
competing risks and multi-state models
Diff between mstate versions 0.2.2 dated 2009-09-24 and 0.2.3 dated 2009-11-06
Changelog.txt | 13 DESCRIPTION | 10 NAMESPACE | 7 R/Cuminc.R | 8 R/events.R | 3 R/expandcovs.R | 10 R/msboot.R | 2 R/msfit.R | 11 R/msprep.R | 2 R/mssample.R | 2 R/plot.msfit.R |only R/plot.probtrans.R |only R/print.msdata.R |only R/probtrans.R | 7 R/redrank.R | 19 R/summary.msfit.R |only R/summary.probtrans.R |only R/transMat.R |only data/prothr.RData |binary inst/doc/Rplots.pdf |18346 +++++++++++++++++++++++++---------------------- inst/doc/Tutorial.Rnw | 266 inst/doc/Tutorial.pdf |binary inst/doc/agsm.bst |only man/Cuminc.Rd | 2 man/ebmt4.Rd | 2 man/events.Rd | 15 man/expandcovs.Rd | 15 man/msfit.Rd | 17 man/msprep.Rd | 8 man/mssample.Rd | 14 man/mstate-package.Rd | 4 man/plot.msfit.Rd |only man/plot.probtrans.Rd |only man/print.msdata.Rd |only man/probtrans.Rd | 15 man/redrank.Rd | 17 man/summary.msfit.Rd |only man/summary.probtrans.Rd |only man/trans.Rd | 29 39 files changed, 10226 insertions(+), 8618 deletions(-)
Author: Friedrich Leisch, with contributions by Evgenia Dimitriadou.
Title: Flexible Cluster Algorithms
Description: The main function kcca implements a general framework for
k-centroids cluster analysis supporting arbitrary distance
measures and centroid computation. Further cluster methods
include hard competitive learning, neural gas, and QT
clustering. There are numerous visualization methods for
cluster results (neighborhood graphs, convex cluster hulls,
barcharts of centroids, ...), and bootstrap methods for the
analysis of cluster stability.
Diff between flexclust versions 1.2-1 dated 2009-07-02 and 1.2-2 dated 2009-11-06
DESCRIPTION | 10 +-- NAMESPACE | 7 +- NEWS | 13 ++++ R/AAA-classes.R | 18 +++++- R/bootstrap.R | 19 ++++++ R/conversion.R | 42 ++++++++++++++- R/distances.R | 6 +- R/family.R |only R/info.R | 4 - R/kcca.R | 115 +----------------------------------------- R/tour.R | 78 ++++++++++++++++++++++++++++ R/utils.R | 2 inst/CITATION | 4 - man/barplot-methods.Rd | 4 - man/bootFlexclust.Rd | 6 +- man/conversion.Rd | 31 +++++++++-- man/distances.Rd | 4 + man/flexclustControl-class.Rd | 8 +- man/kcca.Rd | 4 - man/projAxes.Rd | 4 - man/propBarchart.Rd | 4 - man/qtclust.Rd | 7 +- man/randIndex.Rd | 13 +++- man/stepFlexclust.Rd | 13 ++++ man/stripes.Rd | 4 - tests/plots.R |only 26 files changed, 260 insertions(+), 160 deletions(-)
Author: Yihui Xie
Title: Demonstrate Animations in Statistics
Description: This package consists of various functions for animations
in statistics, covering many areas such as probability theory,
mathematical statistics, multivariate statistics, nonparametric
statistics, sampling survey, linear models, time series,
computational statistics, data mining and machine learning.
These functions might be of help in teaching statistics and
data analysis.
Diff between animation versions 1.0-7 dated 2009-11-02 and 1.0-8 dated 2009-11-06
DESCRIPTION | 10 +++++----- R/ecol.death.sim.R |only R/tidy.source.R | 2 +- inst/NEWS | 35 ++++++++++++++++++++++++++--------- man/HuSpeech.Rd | 2 +- man/animation-package.Rd | 2 +- man/ecol.death.sim.Rd |only 7 files changed, 34 insertions(+), 17 deletions(-)
Author: Marc Schwartz
Diff between WriteXLS versions 1.8.2 dated 2009-10-12 and 1.8.3 dated 2009-11-06
Title: Cross-platform Perl based R function to create Excel 2003 (XLS)
files
Description: Cross-platform perl based R function to create Excel (XLS)
files from one or more data frames. Each data frame will be
written to a separate named worksheet in the Excel spreadsheet.
The worksheet name will be the name of the data frame it
contains or can be specified by the user.
DESCRIPTION | 10 +++++-----
R/testPerl.R | 17 +++++++++++------
2 files changed, 16 insertions(+), 11 deletions(-)
Author: Peter Filzmoser and Barbara Steiger
Title: Statistical Analysis for Environmantel Data
Description: This package offers different possibilities to make
statistical analysis for Environmental Data.
Diff between StatDA versions 1.1 dated 2009-01-26 and 1.2 dated 2009-11-06
StatDA-1.1/StatDA/inst/doc/.build.timestamp |only StatDA-1.2/StatDA/DESCRIPTION | 14 ++++++++----- StatDA-1.2/StatDA/R/qqplot-das.R | 28 ++++++++++++++++++++------- StatDA-1.2/StatDA/data/AuNEW.rda |binary StatDA-1.2/StatDA/data/AuOLD.rda |binary StatDA-1.2/StatDA/data/CHorANADUP.rda |binary StatDA-1.2/StatDA/data/CHorFieldDUP.rda |binary StatDA-1.2/StatDA/data/CHorSTANDARD.rda |binary StatDA-1.2/StatDA/data/bhorizon.rda |binary StatDA-1.2/StatDA/data/bordersKola.rda |binary StatDA-1.2/StatDA/data/chorizon.rda |binary StatDA-1.2/StatDA/data/kola.background.rda |binary StatDA-1.2/StatDA/data/monch.rda |binary StatDA-1.2/StatDA/data/moss.rda |binary StatDA-1.2/StatDA/data/nizap.rda |binary StatDA-1.2/StatDA/data/ohorizon.rda |binary StatDA-1.2/StatDA/data/res.eyefit.As_C.rda |binary StatDA-1.2/StatDA/data/res.eyefit.As_C_m.rda |binary StatDA-1.2/StatDA/data/res.eyefit.AuNEW.rda |binary StatDA-1.2/StatDA/data/res.eyefit.Ca_C.rda |binary StatDA-1.2/StatDA/data/res.eyefit.Ca_O.rda |binary StatDA-1.2/StatDA/data/res.eyefit.Hg_O.rda |binary StatDA-1.2/StatDA/data/res.eyefit.Pb_O1.rda |binary StatDA-1.2/StatDA/data/res.eyefit.Pb_O2.rda |binary StatDA-1.2/StatDA/data/timetrend.rda |binary StatDA-1.2/StatDA/data/topsoil.rda |binary StatDA-1.2/StatDA/inst/doc/StatDA.pdf |binary StatDA-1.2/StatDA/man/concarea.Rd | 2 - StatDA-1.2/StatDA/man/qqplot.das.Rd | 5 +++- 29 files changed, 35 insertions(+), 14 deletions(-)
Author: David Meyer and Kurt Hornik (with contributions by Christian
Buchta)
Title: Sets, Generalized Sets, Customizable Sets and Intervals
Description: Data structures and basic operations for ordinary sets,
generalizations such as fuzzy sets, multisets, and fuzzy
multisets, customizable sets, and intervals.
Diff between sets versions 1.0 dated 2009-08-04 and 1.0-1 dated 2009-11-06
DESCRIPTION | 12 ++--- NAMESPACE | 88 +++++++++++++++++++++++++++++++++++++++++++ NEWS | 25 ++++++++++-- R/allEqual.R | 21 +++++----- R/cardinality.R | 18 ++++---- R/cartesian.R | 12 +++-- R/complement.R | 16 ++++--- R/converters.R | 37 ++++++------------ R/cset.R | 32 ++++++++++++--- R/cut.R | 38 +++++++++--------- R/element.R | 8 +-- R/extractors.R | 69 +++++++++++++++++----------------- R/fuzzyfuns.R | 2 R/fuzzyinference.R | 19 ++++----- R/fuzzylogic.R | 19 +++++---- R/gset.R | 79 +++++++++++++++++++++++---------------- R/intersection.R | 12 ++--- R/interval.R |only R/labels.R | 5 +- R/mean.R | 15 ++----- R/memberships.R | 32 ++++++++------- R/options.R | 2 R/plot.R | 26 +++++++----- R/power.R | 4 - R/predicates.R | 107 ++++++++++++++++++++++++++++++----------------------- R/product.R | 6 +- R/reduction.R | 10 ++-- R/rep.R | 4 - R/set.R | 14 +++++- R/similarity.R | 2 R/sumdiff.R | 6 +- R/summary.R | 33 +++++++++++----- R/tuple.R | 6 ++ R/union.R | 4 - R/utilities.R | 5 ++ inst/NEWS | 25 ++++++++++-- inst/doc/sets.pdf |binary man/cset.Rd | 30 +++++++------- man/gset.Rd | 30 +++++++------- man/interval.Rd |only 40 files changed, 550 insertions(+), 323 deletions(-)
Author: Adrian Baddeley
Diff between spatstat versions 1.17-0 dated 2009-10-22 and 1.17-1 dated 2009-11-06
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Contains
functions for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, and pixel images. Point
process models can be fitted to point pattern data. Cluster
type models are fitted by the method of minimum contrast. Very
general Gibbs point process models can be fitted to point
pattern data using a function ppm similar to lm or glm. Models
may include dependence on covariates, interpoint interaction
and dependence on marks. Fitted models can be simulated
automatically. Also provides facilities for formal inference
(such as chi-squared tests) and model diagnostics (including
simulation envelopes, residuals, residual plots and Q-Q plots).
spatstat-1.17-0/spatstat/man/eval.hyper.Rd |only
spatstat-1.17-1/spatstat/.Rbuildindex.6632 |only
spatstat-1.17-1/spatstat/.Rbuildindex.6913 |only
spatstat-1.17-1/spatstat/DESCRIPTION | 17
spatstat-1.17-1/spatstat/INDEX | 30
spatstat-1.17-1/spatstat/R/Fest.S | 4
spatstat-1.17-1/spatstat/R/First.R | 2
spatstat-1.17-1/spatstat/R/discarea.R | 8
spatstat-1.17-1/spatstat/R/distbdry.S | 31
spatstat-1.17-1/spatstat/R/distmap.R | 8
spatstat-1.17-1/spatstat/R/fgk3.R |only
spatstat-1.17-1/spatstat/R/fv.R | 5
spatstat-1.17-1/spatstat/R/hyperframe.R | 64 +
spatstat-1.17-1/spatstat/R/images.R | 29
spatstat-1.17-1/spatstat/R/infline.R | 43 +
spatstat-1.17-1/spatstat/R/morphology.R | 26
spatstat-1.17-1/spatstat/R/options.R | 127 ++-
spatstat-1.17-1/spatstat/R/pairwise.S | 17
spatstat-1.17-1/spatstat/R/plot.owin.S | 45 -
spatstat-1.17-1/spatstat/R/pp3.R |only
spatstat-1.17-1/spatstat/R/ppx.R |only
spatstat-1.17-1/spatstat/R/random.S | 47 -
spatstat-1.17-1/spatstat/R/rmh.default.R | 220 ++++-
spatstat-1.17-1/spatstat/R/rmhResolveTypes.R | 4
spatstat-1.17-1/spatstat/R/rmhcontrol.R | 117 ++-
spatstat-1.17-1/spatstat/R/tess.R | 46 +
spatstat-1.17-1/spatstat/R/util.S | 10
spatstat-1.17-1/spatstat/R/window.S | 7
spatstat-1.17-1/spatstat/R/wingeom.S | 133 ++-
spatstat-1.17-1/spatstat/inst/doc/shapefiles.Rnw | 1
spatstat-1.17-1/spatstat/inst/doc/shapefiles.pdf | 845 +++++++---------------
spatstat-1.17-1/spatstat/man/F3est.Rd |only
spatstat-1.17-1/spatstat/man/G3est.Rd |only
spatstat-1.17-1/spatstat/man/K3est.Rd |only
spatstat-1.17-1/spatstat/man/Kest.Rd | 7
spatstat-1.17-1/spatstat/man/PairPiece.Rd | 11
spatstat-1.17-1/spatstat/man/Pairwise.Rd | 49 +
spatstat-1.17-1/spatstat/man/as.box3.Rd |only
spatstat-1.17-1/spatstat/man/as.hyperframe.Rd |only
spatstat-1.17-1/spatstat/man/as.hyperframe.ppx.Rd |only
spatstat-1.17-1/spatstat/man/bdist.pixels.Rd | 19
spatstat-1.17-1/spatstat/man/bdist.points.Rd | 2
spatstat-1.17-1/spatstat/man/bdist.tiles.Rd |only
spatstat-1.17-1/spatstat/man/border.Rd |only
spatstat-1.17-1/spatstat/man/box3.Rd |only
spatstat-1.17-1/spatstat/man/coords.Rd |only
spatstat-1.17-1/spatstat/man/deprecated.Rd | 4
spatstat-1.17-1/spatstat/man/diameter.box3.Rd |only
spatstat-1.17-1/spatstat/man/gpc2owin.Rd | 6
spatstat-1.17-1/spatstat/man/hist.im.Rd | 12
spatstat-1.17-1/spatstat/man/hyperframe.Rd | 16
spatstat-1.17-1/spatstat/man/internal.Rd | 28
spatstat-1.17-1/spatstat/man/intersect.owin.Rd | 22
spatstat-1.17-1/spatstat/man/methods.box3.Rd |only
spatstat-1.17-1/spatstat/man/methods.pp3.Rd |only
spatstat-1.17-1/spatstat/man/methods.ppx.Rd |only
spatstat-1.17-1/spatstat/man/perimeter.Rd | 6
spatstat-1.17-1/spatstat/man/plot.hyperframe.Rd | 6
spatstat-1.17-1/spatstat/man/plot.owin.Rd | 2
spatstat-1.17-1/spatstat/man/plot.pp3.Rd |only
spatstat-1.17-1/spatstat/man/pp3.Rd |only
spatstat-1.17-1/spatstat/man/ppx.Rd |only
spatstat-1.17-1/spatstat/man/rSSI.Rd | 9
spatstat-1.17-1/spatstat/man/rmh.default.Rd | 65 +
spatstat-1.17-1/spatstat/man/rmhcontrol.Rd | 97 ++
spatstat-1.17-1/spatstat/man/spatstat-package.Rd | 59 +
spatstat-1.17-1/spatstat/man/spatstat.options.Rd | 21
spatstat-1.17-1/spatstat/man/tess.Rd | 3
spatstat-1.17-1/spatstat/man/with.hyperframe.Rd |only
spatstat-1.17-1/spatstat/src/call3d.c |only
spatstat-1.17-1/spatstat/src/f3.c |only
spatstat-1.17-1/spatstat/src/functable.h |only
spatstat-1.17-1/spatstat/src/g3.c |only
spatstat-1.17-1/spatstat/src/geom3.h |only
spatstat-1.17-1/spatstat/src/k3.c |only
spatstat-1.17-1/spatstat/src/methas.c | 34
spatstat-1.17-1/spatstat/src/methas.h | 2
spatstat-1.17-1/spatstat/src/sphefrac.c |only
spatstat-1.17-1/spatstat/src/sphevol.c |only
79 files changed, 1510 insertions(+), 856 deletions(-)
Author: Andrej-Nikolai Spiess
Diff between qpcR versions 1.2-2 dated 2009-09-21 and 1.2-3 dated 2009-11-06
Title: Modelling and analysis of real-time PCR data
Description: Model fitting, optimal model selection and calculation of
various features that are essential in the analysis of
quantitative real-time polymerase chain reaction (qPCR).
DESCRIPTION | 6 ++--
NAMESPACE | 1
R/calib.r | 74 ++++++++++++++++++++++++++++++++----------------------
R/calib2.r | 13 +++++----
R/fitprob.r |only
R/pcrGOF.R | 2 -
data/batsch1.rda |only
data/batsch2.rda |only
data/batsch3.rda |only
data/batsch4.rda |only
data/batsch5.rda |only
man/BIC.Rd | 2 -
man/batschetal.rd |only
man/calib.Rd | 10 +++++--
man/fitprob.rd |only
man/pcrGOF.Rd | 1
16 files changed, 66 insertions(+), 43 deletions(-)
Author: Garrett M. Dancik
Title: Maximum Likelihood Estimates of Gaussian Processes
Description: Maximum likelihood Gaussian process modeling for
univariate and multi-dimensional outputs with diagnostic plots
and sensitivity analysis.
Diff between mlegp versions 2.2.6 dated 2009-03-08 and 3.1.0 dated 2009-11-06
mlegp-2.2.6/mlegp/R/ANOVAInteractionEffect.R |only mlegp-2.2.6/mlegp/R/ANOVAMainEffect.R |only mlegp-2.2.6/mlegp/R/FANOVADecomposition.R |only mlegp-2.2.6/mlegp/R/FANOVADecomposition.gp.R |only mlegp-2.2.6/mlegp/R/FANOVADecomposition.gp.list.R |only mlegp-2.2.6/mlegp/R/FunctionalVariance.R |only mlegp-2.2.6/mlegp/R/Integrate1DCor.R |only mlegp-2.2.6/mlegp/R/Integrate1DCorSquared.R |only mlegp-2.2.6/mlegp/R/IntegrateForVariance.R |only mlegp-2.2.6/mlegp/R/IntegrateInteractionEffectSquared.R |only mlegp-2.2.6/mlegp/R/IntegrateMainEffectSquared.R |only mlegp-2.2.6/mlegp/R/OverallMean.R |only mlegp-2.2.6/mlegp/R/calcMainEffect.R |only mlegp-2.2.6/mlegp/R/computeCorElement.R |only mlegp-2.2.6/mlegp/R/computeCorElementExcept.R |only mlegp-2.2.6/mlegp/R/createIntegratedCorMatrixExcept.R |only mlegp-2.2.6/mlegp/R/expectedMeanReg.R |only mlegp-2.2.6/mlegp/R/expectedMeanRegExcept.R |only mlegp-2.2.6/mlegp/R/nice.R |only mlegp-2.2.6/mlegp/R/plotInteractionEffect.R |only mlegp-2.2.6/mlegp/R/plotMainEffects.R |only mlegp-2.2.6/mlegp/R/plotMainEffects.gp.R |only mlegp-2.2.6/mlegp/R/plotMainEffects.gp.list.R |only mlegp-2.2.6/mlegp/R/plotMainEffectsUsingPCWeights.R |only mlegp-2.2.6/mlegp/inst/doc/Rplots.ps |only mlegp-2.2.6/mlegp/inst/doc/SA-005.pdf |only mlegp-2.2.6/mlegp/inst/doc/SA-007.pdf |only mlegp-2.2.6/mlegp/inst/doc/SA.Rnw |only mlegp-2.2.6/mlegp/inst/doc/SA.pdf |only mlegp-2.2.6/mlegp/inst/doc/SVD-004.pdf |only mlegp-2.2.6/mlegp/inst/doc/SVD-009.pdf |only mlegp-2.2.6/mlegp/inst/doc/SVD-012.pdf |only mlegp-2.2.6/mlegp/inst/doc/SVD.Rnw |only mlegp-2.2.6/mlegp/inst/doc/SVD.pdf |only mlegp-2.2.6/mlegp/inst/doc/gp.Rnw |only mlegp-2.2.6/mlegp/inst/doc/gp.pdf |only mlegp-2.2.6/mlegp/inst/doc/gp_ex-003.eps |only mlegp-2.2.6/mlegp/inst/doc/gp_ex-012.pdf |only mlegp-2.2.6/mlegp/inst/doc/gp_ex.Rnw |only mlegp-2.2.6/mlegp/inst/doc/gp_ex.pdf |only mlegp-2.2.6/mlegp/inst/doc/gp_ex.tex |only mlegp-2.2.6/mlegp/inst/doc/overview.Rnw |only mlegp-2.2.6/mlegp/inst/doc/overview.pdf |only mlegp-2.2.6/mlegp/inst/doc/play |only mlegp-2.2.6/mlegp/man/FANOVADecomposition.Rd |only mlegp-2.2.6/mlegp/man/FANOVAFunctions.Rd |only mlegp-2.2.6/mlegp/man/mlegp-sa-internal.Rd |only mlegp-2.2.6/mlegp/man/nice.Rd |only mlegp-2.2.6/mlegp/man/plotInteractionEffect.Rd |only mlegp-2.2.6/mlegp/man/plotMainEffects.Rd |only mlegp-3.1.0/mlegp/CHANGES | 5 mlegp-3.1.0/mlegp/DESCRIPTION | 28 - mlegp-3.1.0/mlegp/R/loadCLibAndAdapt.R | 28 - mlegp-3.1.0/mlegp/R/mlegp.R | 139 +++- mlegp-3.1.0/mlegp/R/mlegp2.R |only mlegp-3.1.0/mlegp/R/uniqueSummary.R |only mlegp-3.1.0/mlegp/inst/doc/Makefile | 56 +- mlegp-3.1.0/mlegp/inst/doc/Rplots.pdf |only mlegp-3.1.0/mlegp/inst/doc/gp_ex-003.pdf | 446 ++++++++-------- mlegp-3.1.0/mlegp/inst/doc/mlegp-003.pdf |only mlegp-3.1.0/mlegp/inst/doc/mlegp-018.pdf |only mlegp-3.1.0/mlegp/inst/doc/mlegp.Rnw | 270 +++++++++ mlegp-3.1.0/mlegp/inst/doc/mlegp.out |only mlegp-3.1.0/mlegp/inst/doc/mlegp.pdf |binary mlegp-3.1.0/mlegp/man/createGP.Rd | 2 mlegp-3.1.0/mlegp/man/createWindow.Rd | 2 mlegp-3.1.0/mlegp/man/is.gp.Rd | 2 mlegp-3.1.0/mlegp/man/mlegp.Rd | 40 + mlegp-3.1.0/mlegp/man/uniqueSummary.Rd |only mlegp-3.1.0/mlegp/src/fit_gp.h | 218 +++++-- mlegp-3.1.0/mlegp/src/gp.h | 15 mlegp-3.1.0/mlegp/src/matrix_vector.h | 34 + mlegp-3.1.0/mlegp/src/mlegp.c | 22 mlegp-3.1.0/mlegp/src/nelder_mead_min.c | 4 74 files changed, 928 insertions(+), 383 deletions(-)
Author: Dominick Samperi
Diff between RcppTemplate versions 6.0 dated 2009-11-03 and 6.1 dated 2009-11-06
Title: Rcpp R/C++ Object Mapping Library and Package Template
Description: The Rcpp class library enables C++ to speak the language
of R. The library maps the most commonly used R data structures
to C++ classes. This includes vectors, matrices, factors,
dates, data frames, time series, and functions. R can call C++
functions, and C++ objects can call R functions, and the
parameters and return values can be of any of the types just
mentioned. This package serves two roles: 1. it serves as a
demo package for Rcpp, and 2. it serves as a template for the
creation of new packages that use the Rcpp library (and also
for packages that do not). An important goal of the library is
to support the creation of high-performance packages that do
heavy computations on large data sets where a hybrid R/C++
strategy is the best fit. See the document RcppDoc.pdf for more
information. The R package Rcpp is a forked version of a
previous version of this software and is not discussed here.
DESCRIPTION | 13 +++++++------
RcppSrc/Rcpp.cpp | 2 +-
inst/doc/RcppDoc.Rnw | 2 +-
inst/doc/RcppDoc.pdf |binary
4 files changed, 9 insertions(+), 8 deletions(-)
Author: Yong ZANG
Diff between Rassoc versions 1.0 dated 2009-07-30 and 1.01 dated 2009-11-06
Title: Robust tests for case-control genetic association studies
Description: This package supplies several robust tests for
case-control genetic association studies. The tests contained
in this package are: allelic based test, Cochran-Armitage trend
test, maximin efficiency robust test, MAX3 test and genetic
model selection test. For each test, the corresponding R code
reports the test statistics and the associated p-value.
DESCRIPTION | 12 ++---
JSS487_revisionV2.pdf |only
R/ABT.R | 56 +++++++++++++++++++----
R/CATT.R | 45 ++++++++++++++-----
R/GMS.R | 118 +++++++++++++++++++++++++++++++++++---------------
R/MAX3.R | 113 ++++++++++++++++++++++++++++++++---------------
R/MERT.R | 57 +++++++++++++++++-------
man/ABT.Rd | 30 +++---------
man/CATT.Rd | 27 +++--------
man/GMS.Rd | 93 +++++++++------------------------------
man/MAX3.Rd | 96 ++++++++++------------------------------
man/MERT.Rd | 27 +++--------
man/Rassoc-package.Rd | 6 +-
man/caco.Rd | 16 ++----
14 files changed, 367 insertions(+), 329 deletions(-)