Tue, 10 Nov 2009

Package rlecuyer updated to version 0.3-1 with previous version 0.2 dated 2009-01-23

Author: Hana Sevcikova , Tony Rossini
Title: R interface to RNG with multiple streams
Description: Provides an interface to the C implementation of the random number generator with multiple independent streams developed by L'Ecuyer et al (2002). The main purpose of this package is to enable the use of this random number generator in parallel R applications.

Diff between rlecuyer versions 0.2 dated 2009-01-23 and 0.3-1 dated 2009-11-10

 DESCRIPTION           |   19 +++++++++++++------
 man/SetPackageSeed.Rd |    2 +-
 src/RngWrap.c         |    4 +++-
 3 files changed, 17 insertions(+), 8 deletions(-)

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Package tractor.base updated to version 1.3.0 with previous version 1.2.0 dated 2009-08-21

Author: Jon Clayden
Title: Basic functions for the TractoR (tractography with R) bundle
Description: The tractor.base package consists of functions for working with magnetic resonance images. It can read and write image files stored in Analyze, NIfTI and DICOM formats (DICOM support is read only), generate images for use as regions of interest, and manipulate and visualise images.

Diff between tractor.base versions 1.2.0 dated 2009-08-21 and 1.3.0 dated 2009-11-10

 DESCRIPTION          |    8 ++++----
 R/bootstrap.R        |    9 +++++++--
 R/dicom.R            |   16 +++++++++++-----
 R/internal.R         |   20 +++++++++++---------
 R/output.R           |    2 +-
 R/png.R              |    7 +++++--
 R/viz.R              |   24 +++++++++++++++---------
 man/visualisation.Rd |    9 +++++----
 8 files changed, 59 insertions(+), 36 deletions(-)

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Package spatstat updated to version 1.17-2 with previous version 1.17-1 dated 2009-11-06

Author: Adrian Baddeley and Rolf Turner , with substantial contributions of code by Marie-Colette van Lieshout, Rasmus Waagepetersen, Kasper Klitgaard Berthelsen and Dominic Schuhmacher. Additional contributions by Ang Qi Wei, C. Beale, R. Bernhardt, B. Biggerstaff, R. Bivand, F. Bonneu, J. Burgos, J.B. Chen, Y.C. Chin, B. Christensen, M. de la Cruz, P.J. Diggle, S. Eglen, A. Gault, M. Genton, P. Grabarnik, C. Graf, J. Franklin, U. Hahn, M. Hering, M.B. Hansen, M. Hazelton, J. Heikkinen, K. Hornik, R. Ihaka, R. John-Chandran, D. Johnson, J. Laake, R. Mark, J. Mateu, P. McCullagh, S. Meyer, X.C. Mi, J. Moller, L.S. Nielsen, F. Nunes, E. Parilov, J. Picka, M. Reiter, B.D. Ripley, B. Rowlingson, E. Rubak, J. Rudge, A. Sarkka, K. Schladitz, B.T. Scott, I.-M. Sintorn, M. Spiess, M. Stevenson, P. Surovy, B. Turlach, A. van Burgel, T. Verbeke, A. Villers, H. Wang, H. Wendrock and S. Wong.
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns. Contains functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images and tessellations. Point process models can be fitted to point pattern data. Cluster type models are fitted by the method of minimum contrast. Very general Gibbs point process models can be fitted to point pattern data using a function ppm similar to lm or glm. Models may include dependence on covariates, interpoint interaction and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).

Diff between spatstat versions 1.17-1 dated 2009-11-06 and 1.17-2 dated 2009-11-10

 .Rbuildindex.12568      |only
 .Rbuildindex.17656      |only
 .Rbuildindex.9742       |only
 DESCRIPTION             |   34 +-
 INDEX                   |    4 
 R/pp3.R                 |   45 +++
 inst/doc/shapefiles.pdf |  673 ++++++++++++++++++++++++------------------------
 man/F3est.Rd            |    5 
 man/G3est.Rd            |    5 
 man/K3est.Rd            |    5 
 man/methods.box3.Rd     |    9 
 man/methods.pp3.Rd      |   24 +
 man/rpoispp.Rd          |    7 
 man/rpoispp3.Rd         |only
 man/runifpoint3.Rd      |only
 man/spatstat-package.Rd |    5 
 src/areaint.c           |    2 
 src/call3d.c            |   22 -
 src/dgs.c               |    2 
 src/diggra.c            |    2 
 src/dist2.c             |    2 
 src/f3.c                |   13 
 src/g3.c                |   21 -
 src/getcif.c            |   31 --
 src/geyer.c             |    4 
 src/lookup.c            |   12 
 src/methas.c            |    8 
 src/methas.h            |    2 
 src/sftcr.c             |    5 
 src/straushm.c          |    4 
 src/straussm.c          |    4 
 31 files changed, 517 insertions(+), 433 deletions(-)

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Package rjags updated to version 1.0.3-12 with previous version 1.0.3-11 dated 2009-10-11

Author: Martyn Plummer
Title: Bayesian graphical models using MCMC
Description: Interface to the JAGS MCMC library

Diff between rjags versions 1.0.3-11 dated 2009-10-11 and 1.0.3-12 dated 2009-11-10

 DESCRIPTION           |    8 ++++----
 NAMESPACE             |    3 ---
 R/unix/progress.bar.R |    8 ++++----
 3 files changed, 8 insertions(+), 11 deletions(-)

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Package irr updated to version 0.82 with previous version 0.81 dated 2009-10-26

Author: Matthias Gamer , Jim Lemon , Ian Fellows
Title: Various Coefficients of Interrater Reliability and Agreement
Description: Coefficients of Interrater Reliability and Agreement for quantitative, ordinal and nominal data: ICC, Finn-Coefficient, Robinson'A, Kendall's W, Cohen's Kappa, ...

Diff between irr versions 0.81 dated 2009-10-26 and 0.82 dated 2009-11-10

 CHANGES           |    3 +++
 DESCRIPTION       |    8 ++++----
 R/icc.R           |   12 ++++++------
 R/print.icclist.R |    2 +-
 man/icc.Rd        |    2 +-
 5 files changed, 15 insertions(+), 12 deletions(-)

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New package r4ss with initial version 1.0
Package: r4ss
Type: Package
Title: R code for Stock Synthesis
Version: 1.0
Date: 2009-11-07
Author: Ian Taylor, Ian Stewart, Tommy Garrison, Andre Punt, and other contributors
Maintainer: Ian Taylor
Depends: R (>= 2.8.0), tcltk
Description: Functions for reading output, plotting, exploring and manipulating input files for Richard Methot's Stock Synthesis fisheries stock assessment modeling platform.
License: MIT License
LazyLoad: yes
Packaged: 2009-11-09 22:39:36 UTC; ian
Repository: CRAN
Date/Publication: 2009-11-10 10:15:21

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Package fGarch updated to version 2110.80 with previous version 2100.79 dated 2009-09-28

Author: Diethelm Wuertz and Yohan Chalabi with contribution from Michal Miklovic, Chris Boudt, Pierre Chausse and others
Title: Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
Description: Environment for teaching "Financial Engineering and Computational Finance"

Diff between fGarch versions 2100.79 dated 2009-09-28 and 2110.80 dated 2009-11-10

 ChangeLog           | 2620 ++++++++++++++++++++++++++++++++++++++++++++++++++--
 DESCRIPTION         |   10 
 R/methods-predict.R |   18 
 3 files changed, 2544 insertions(+), 104 deletions(-)

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Package Rcpp updated to version 0.6.8 with previous version 0.6.7 dated 2009-11-08

Author: Dirk Eddelbuettel with contributions by Simon Urbanek and David Reiss
Title: Rcpp R/C++ interface package
Description: R/C++ interface classes and examples The Rcpp library maps data types betweeen R and C++, and includes support for R types real, integer, character, vector, matrix, Date, datetime (i.e. POSIXct) at microsecond resolution, data frame, and function. It also supports calling R functions from C++. Several examples are included.

Diff between Rcpp versions 0.6.7 dated 2009-11-08 and 0.6.8 dated 2009-11-10

 DESCRIPTION          |    8 -
 inst/ChangeLog       |   10 ++
 libRcpp.a            |only
 src/Makevars         |   16 ++-
 src/Makevars.win     |   53 +++++++---
 src/Rcpp.cpp         |  250 ---------------------------------------------------
 src/Rcpp.h           |  144 -----------------------------
 src/RcppCommon.h     |only
 src/RcppDate.cpp     |only
 src/RcppDate.h       |only
 src/RcppDatetime.cpp |only
 src/RcppDatetime.h   |only
 src/RcppExample.cpp  |    2 
 src/RcppList.cpp     |   12 ++
 src/RcppList.h       |   23 ----
 src/RcppParams.cpp   |only
 src/RcppParams.h     |only
 17 files changed, 84 insertions(+), 434 deletions(-)

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Package CausalGAM updated to version 0.1-2 with previous version 0.1-1 dated 2009-11-08

Author: Adam Glynn , Kevin Quinn
Title: Estimation of Causal Effects with Generalized Additive Models
Description: This package implements various estimators for average treatment effects---an inverse probability weighted (IPW) estimator, an augmented inverse probability weighted (AIPW) estimator, and a standard regression estimator---that make use of generalized additive models for the treatment assignment model and/or outcome model.

Diff between CausalGAM versions 0.1-1 dated 2009-11-08 and 0.1-2 dated 2009-11-10

 DESCRIPTION |    8 ++++----
 HISTORY     |    2 +-
 R/zzz.R     |    5 +----
 3 files changed, 6 insertions(+), 9 deletions(-)

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