Wed, 11 Nov 2009

Package e1071 updated to version 1.5-21 with previous version 1.5-20 dated 2009-10-19

Author: Evgenia Dimitriadou, Kurt Hornik, Friedrich Leisch, David Meyer, and Andreas Weingessel
Title: Misc Functions of the Department of Statistics (e1071), TU Wien
Description: Functions for latent class analysis, short time Fourier transform, fuzzy clustering, support vector machines, shortest path computation, bagged clustering, naive Bayes classifier, ...

Diff between e1071 versions 1.5-20 dated 2009-10-19 and 1.5-21 dated 2009-11-11

 e1071-1.5-20/e1071/inst/NEWS                   |only
 e1071-1.5-21/e1071/DESCRIPTION                 |    8 ++++----
 e1071-1.5-21/e1071/NEWS                        |    4 ++++
 e1071-1.5-21/e1071/R/svm.R                     |   19 ++++++++++---------
 e1071-1.5-21/e1071/inst/doc/svmdoc.pdf         |binary
 e1071-1.5-21/e1071/inst/doc/svmdoc.pdf.2.r3331 |only
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 13 files changed, 18 insertions(+), 13 deletions(-)

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Package rgdal updated to version 0.6-21 with previous version 0.6-20 dated 2009-10-30

Author: Timothy H. Keitt , Roger Bivand , Edzer Pebesma , Barry Rowlingson
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data Abstraction Library (GDAL) (>= 1.3.1) and access to projection/transformation operations from the PROJ.4 library. The GDAL and PROJ.4 libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both GDAL raster and OGR vector map data can be imported into R, and GDAL raster data and OGR vector data exported. Use is made of classes defined in the sp package.

Diff between rgdal versions 0.6-20 dated 2009-10-30 and 0.6-21 dated 2009-11-11

 ChangeLog       |   21 +++++++++++++++++++++
 DESCRIPTION     |    8 ++++----
 R/AAA.R         |   23 +++++++++++++----------
 R/ogr_write.R   |   22 +++++++++++++++++-----
 inst/ChangeLog  |   21 +++++++++++++++++++++
 man/writeOGR.Rd |    2 +-
 6 files changed, 77 insertions(+), 20 deletions(-)

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Package prettyR updated to version 1.7 with previous version 1.5 dated 2009-06-18

Author: Jim Lemon , Philippe Grosjean
Title: Pretty descriptive stats.
Description: Functions for conventionally formatted descriptive stats, and to format R output as HTML.

Diff between prettyR versions 1.5 dated 2009-06-18 and 1.7 dated 2009-11-11

 DESCRIPTION       |    8 ++++----
 NEWS              |only
 R/htmlize.R       |   13 ++++++++-----
 R/print.xtab.R    |   27 ++++++++++++++++++++++-----
 R/xtab.R          |    2 +-
 man/htmlize.Rd    |    9 ++++++---
 man/print.xtab.Rd |   20 +++++++++++++++-----
 man/xtab.Rd       |    3 ++-
 8 files changed, 58 insertions(+), 24 deletions(-)

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Package frontier updated to version 0.996-0 with previous version 0.995-8 dated 2009-10-18

Author: Tim Coelli, Arne Henningsen
Title: Stochastic Frontier Analysis
Description: Maximum Likelihood Estimation of Stochastic Frontier Production and Cost Functions. Two specifications are available: the error components specification with time-varying efficiencies (Battese and Coelli, 1992) and a model specification in which the firm effects are directly influenced by a number of variables (Battese and Coelli, 1995).

Diff between frontier versions 0.995-8 dated 2009-10-18 and 0.996-0 dated 2009-11-11

 DESCRIPTION                   |    9 
 INDEX                         |    2 
 NAMESPACE                     |    5 
 NEWS                          |   28 
 R/efficiencies.frontier.R     |   18 
 R/frontierQuad.R              |    8 
 R/logLik.frontier.R           |    5 
 R/lrtest.frontier.R           |only
 R/print.summary.frontier.R    |   35 
 R/residuals.frontier.R        |   18 
 R/sfa.R                       |  120 
 man/efficiencies.frontier.Rd  |    5 
 man/frontier.Rd               |   19 
 man/logLik.frontier.Rd        |    5 
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 man/summary.frontier.Rd       |    7 
 src/front41.f                 |  171 
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 tests/frontier41.Rout.save    |   20 
 tests/frontierTest.R          |  232 
 tests/frontierTest.Rout.save  |32647 ++++++++++++++++++++++++------------------
 tests/nestedModels.R          |   20 
 tests/nestedModels.Rout.save  |   70 
 tests/translogRay.R           |    1 
 tests/translogRay.Rout.save   |  306 
 tests/wrongSkewness.R         |only
 tests/wrongSkewness.Rout.save |only
 28 files changed, 19322 insertions(+), 14429 deletions(-)

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Package forensim updated to version 1.1-2 with previous version 1.1-1 dated 2009-10-26

Author: Hinda Haned
Title: Statistical tools for the interpretation of forensic DNA mixtures
Description: Statistical methods and simulation tools for the interpretation of forensic DNA mixtures

Diff between forensim versions 1.1-1 dated 2009-10-26 and 1.1-2 dated 2009-11-11

 DESCRIPTION              |   10 +++---
 R/A2.simu.R              |    6 +---
 R/classes_constructors.R |    3 +-
 man/simufreqD.Rd         |    2 -
 man/simupopD.Rd          |    2 -
 src/recurs.c             |   70 +++++++++++++++++++++++++++++++++++++----------
 6 files changed, 67 insertions(+), 26 deletions(-)

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Package estout updated to version 0.7-1 with previous version 0.6-1 dated 2009-08-08

Author: Felix Kaminsky , inspired by the estout package for Stata.
Title: Estimates Output
Description: The function collection stores the estimates of several models and formats it to a table of the form estimate starred and std.err. below. The default output is LaTeX but output to CSV for later editing in a spreadsheet tool is possible as well. It works for linear models (lm) and panel models from the "plm"-package (plm). The added "descsto" and "desctab" enable you to export descriptive statistics of data-frames and single variables to LaTeX and CSV.

Diff between estout versions 0.6-1 dated 2009-08-08 and 0.7-1 dated 2009-11-11

 DESCRIPTION   |    6 +-
 R/esttab.R    |  173 +++++++++++++++++++++++++++++++++++-----------------------
 man/esttab.Rd |   14 +++-
 3 files changed, 119 insertions(+), 74 deletions(-)

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New package aroma.light with initial version 1.15.1
Package: aroma.light
Version: 1.15.1
Date: 2009-11-01
Title: Light-weight methods for normalization and visualization of microarray data using only basic R data types
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
Depends: R.methodsS3
Suggests: R.oo, R.utils, princurve
Description: Methods for microarray analysis that take basic data types such as matrices and lists of vectors. These methods can be used standalone, be utilized in other packages, or be wrapped up in higher-level classes.
License: LGPL
biocViews: Infrastructure, Microarray, OneChannel, TwoChannel, MultiChannel, Visualization, Preprocessing
URL: http://www.braju.com/R/
LazyLoad: TRUE
Packaged: 2009-11-10 15:53:10 UTC; hb
Repository: CRAN
Date/Publication: 2009-11-11 13:10:12

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Package KFAS updated to version 0.4.7 with previous version 0.4.6 dated 2009-10-22

Author: Jouni Helske
Title: Multivariate Kalman filter and smoother, simulation smoother and forecasting of state space models. State smoothing and approximate likelihood of exponential family state space models.
Description: Package KFAS provides functions for fast Kalman filtering, state and disturbance smoothing, forecasting and simulation of multivariate time-variant state space models. All functions can use exact diffuse initialisation when distributions of some or all elements of initial state vector are unknown. Filtering, state smoothing and simulation functions use sequential processing algorithm, which is faster than standard approach, and it also allows singularity of prediction error variance matrix. KFAS also contains function for approximation of likelihood of exponential family state space models and function for state smoothing of exponential family state space models.

Diff between KFAS versions 0.4.6 dated 2009-10-22 and 0.4.7 dated 2009-11-11

 DESCRIPTION         |   23 ++++++++++++----------
 NAMESPACE           |    2 -
 R/KFAS.R            |   54 +++++++++++++++++++++++++++++++---------------------
 man/expflik.Rd      |   38 ++++++++++++++++++++++++++++++++++++
 man/expfsmoother.Rd |only
 man/ks.Rd           |    1 
 6 files changed, 85 insertions(+), 33 deletions(-)

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New package vegdata with initial version 0.1
Package: vegdata
Version: 0.1
Date: 11.2009
Title: Functions to use vegetation databases (Turboveg) for vegetation analyses in R
LazyLoad: yes
LazyData: yes
Author: Florian Jansen
Maintainer: Florian Jansen
Depends: R (>= 2.0.0), foreign
Suggests: RODBC, lattice, RMySQL, Hmisc, vegan, labdsv, akima
Description: Handling of vegetation data sets from Turboveg Databases. Taxonomic valuation for German Taxonomical Standard List.
License: GPL (>= 2)
URL: http://geobot.botanik.uni-greifswald.de/reflist
Packaged: 2009-11-10 22:57:27 UTC; jansen
Repository: CRAN
Date/Publication: 2009-11-11 07:42:44

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New package nutshell with initial version 1.0
Package: nutshell
Type: Package
Title: Data for "R in a Nutshell"
Version: 1.0
Date: 2009-10-11
Author: Joseph Adler
Maintainer: Joseph Adler
Description: This package contains data sets used as examples in the book "R in a Nutshell" from O'Reilly Media. For more information on this book, see http://oreilly.com/catalog/9780596801717/
License: file LICENSE
LazyLoad: yes
Packaged: 2009-11-11 05:07:00 UTC; josephadler
Repository: CRAN
Date/Publication: 2009-11-11 07:42:31

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Package epitools updated to version 0.5-4 with previous version 0.5-3 dated 2009-04-15

Author: Tomas Aragon
Title: Epidemiology Tools
Description: EpiTools: R Package for Epidemiologic Data and Graphics

Diff between epitools versions 0.5-3 dated 2009-04-15 and 0.5-4 dated 2009-11-11

 DESCRIPTION        |    8 ++++----
 man/as.hour.Rd     |    2 +-
 man/as.month.Rd    |    2 +-
 man/as.week.Rd     |    2 +-
 man/colorbrewer.Rd |    7 -------
 man/epidate.Rd     |   19 +------------------
 man/julian2date.Rd |    2 +-
 7 files changed, 9 insertions(+), 33 deletions(-)

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New package ebdbNet with initial version 1.0
Package: ebdbNet
Type: Package
Title: Empirical Bayes Estimation of Dynamic Bayesian Networks
Version: 1.0
Date: 2009-11-05
Author: Andrea Rau
Maintainer: Andrea Rau
Depends: R (>= 2.8.1)
Suggests: GeneNet
Description: This package is used to infer the adjacency matrix of a network from time course data using an empirical Bayes estimation procedure based on Dynamic Bayesian Networks.
License: GPL
URL: http://www.r-project.org
LazyLoad: yes
Packaged: Tue Nov 10 16:40:59 2009; arau
Repository: CRAN
Date/Publication: 2009-11-11 07:42:20

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