Author: Roger Bivand
Title: Interface between GRASS 6 geographical information system and R
Description: Interpreted interface between GRASS 6 geographical
information system and R, based on starting R from within the
GRASS environment, or running free-standing R in a temporary
GRASS location; the package provides facilities for using all
GRASS commands from the R command line.
Diff between spgrass6 versions 0.6-11 dated 2009-10-30 and 0.6-12 dated 2009-11-15
ChangeLog | 8 ++- DESCRIPTION | 8 +-- R/bin_link.R | 110 ------------------------------------------ R/vect_link.R | 144 +++++++++++++++++++++++++++++++++++-------------------- R/xml1.R | 4 + inst/ChangeLog | 8 ++- man/readRAST6.Rd | 2 7 files changed, 118 insertions(+), 166 deletions(-)
Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner,
Bruce Kendall
Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes
Diff between pomp versions 0.25-4 dated 2009-09-22 and 0.25-7 dated 2009-11-15
DESCRIPTION | 14 ++--- NAMESPACE | 1 R/mif.R | 12 ++++ R/nlf.R | 6 +- R/slice.R | 15 +++++ inst/ChangeLog | 27 +++++++++ inst/doc/advanced_topics_in_pomp.pdf |binary inst/doc/intro_to_pomp.pdf |binary man/slice.Rd | 42 +++++++++++++-- man/sobol.Rd | 1 tests/ou2-mif.R | 22 ++++++++ tests/ou2-mif.Rout.save | 24 ++++++++ tests/ou2-nlf.R | 14 +++++ tests/ou2-nlf.Rout.save | 96 +++++++++++++++++++---------------- 14 files changed, 216 insertions(+), 58 deletions(-)
Author: Peter Solymos
Title: Multivariate Data Handling in Ecology and Biogeography
Description: A framework package aimed to provide standardized
computational environment for specialist work via object
classes to represent the data coded by samples, taxa and
segments (i.e. subpopulations, repeated measures). It supports
easy processing of the data along with cross tabulation and
relational data tables for samples and taxa. An object of class
`mefa' is a project specific compendium of the data and can be
easily used in further analyses. Methods are provided for
extraction, aggregation, conversion, plotting, summary and
reporting of `mefa' objects. Reports can be generated in plain
text or LaTeX format. Vignette contains worked examples.
Diff between mefa versions 3.1-3 dated 2009-10-15 and 3.1-4 dated 2009-11-15
DESCRIPTION | 10 +++++----- R/zzz.R | 2 +- inst/ChangeLog | 9 +++++++-- inst/doc/mefa.pdf |binary 4 files changed, 13 insertions(+), 8 deletions(-)
Author: code by Fionn Murtagh and R development team, modifications and
packaging by Peter Langfelder
Title: Implementation of optimal hierarchical clustering
Description: Implementation of optimal hierarchical clustering
Diff between flashClust versions 0.10 dated 2009-02-05 and 0.10-1 dated 2009-11-15
Changelog |only DESCRIPTION | 13 ++++++++----- R/murtagh.R | 3 +++ 3 files changed, 11 insertions(+), 5 deletions(-)
Author: Felix Kaminsky
Diff between estout versions 0.7-1 dated 2009-11-11 and 0.8-1 dated 2009-11-15
Title: Estimates Output
Description: The function collection stores the estimates of several
models and formats it to a table of the form estimate starred
and std.err. below. The default output is LaTeX but output to
CSV for later editing in a spreadsheet tool is possible as
well. It works for linear models (lm) and panel models from the
"plm"-package (plm). The added "descsto" and "desctab" enable
you to export descriptive statistics of data-frames and single
variables to LaTeX and CSV.
DESCRIPTION | 6 +-
R/esttab.R | 172 ++++++++++++++++++++++++++++++++--------------------------
man/esttab.Rd | 9 ++-
3 files changed, 104 insertions(+), 83 deletions(-)
Author: Nils B. Weidmann
Diff between cshapes versions 0.1-1 dated 2009-08-13 and 0.1-2 dated 2009-11-15
Title: CShapes Dataset and Utilities
Description: Package for CShapes, a GIS dataset of country boundaries
(1946-2008). Includes functions for data extraction and the
computation of weights matrices.
DESCRIPTION | 8 ++++----
inst/java/cshapes.jar |binary
inst/shp/changelog.txt |only
inst/shp/cshapes.shp.xml |only
inst/shp/readme.txt | 23 +++++++++++++++--------
man/cshapes-package.Rd | 10 +++++++++-
man/cshapes2yearly.Rd | 4 ++--
man/cshp.Rd | 6 +++---
man/distmatrix.Rd | 9 +++++----
9 files changed, 38 insertions(+), 22 deletions(-)
Author: Peter Gilbert, Ian McKeague, and Yanqing Sun
Title: Continuous mark-specific relative risks for two groups
Description: Estimation and testing of continuous mark-specific
relative risks in two groups as described in Gilbert, P.,
McKeague, I. and Sun, Y. (2008) The 2-sample problem for
failure rates depending on a continuous mark: an application to
vaccine efficacy. Biostatistics 9, 2, 263-276. This package
implements the methods presented in the paper for testing
mark-specific hazards ratios and for estimation of
mark-specific incidence ratios that are cumulative in time or
cumulative in both time and the continuous mark.
Diff between cmprskContin versions 1.3 dated 2009-08-28 and 1.5 dated 2009-11-15
DESCRIPTION | 8 ++++---- NEWS | 23 +++++++++++++++++++---- R/cmprsk.R | 18 +++++++++++++++--- man/cmprsk.Rd | 8 ++++---- man/cmprskContin-package.Rd | 4 ++-- man/plotCmprsk.Rd | 2 +- man/summaryCmprsk.Rd | 2 +- src/cmprskContin.f | 4 ++-- 8 files changed, 48 insertions(+), 21 deletions(-)