Mon, 16 Nov 2009

Package stringr updated to version 0.2 with previous version 0.1.10 dated 2009-11-09

Author: Hadley Wickham
Title: Make it easier to work with strings.
Description: stringr is a set of simple wrappers that make R's string functions more consistent, simpler and easier to use. It does this by ensuring that: function and argument names (and positions) are consistent, all functions deal with NA's and zero length character appropriately, and the output data structures from each function matches the input data structures of other functions.

Diff between stringr versions 0.1.10 dated 2009-11-09 and 0.2 dated 2009-11-16

 stringr-0.1.10/stringr/R/basics.r            |only
 stringr-0.1.10/stringr/R/regexp.r            |only
 stringr-0.2/stringr/DESCRIPTION              |    9 +++++----
 stringr-0.2/stringr/NEWS                     |only
 stringr-0.2/stringr/R/detect.r               |only
 stringr-0.2/stringr/R/dup.r                  |only
 stringr-0.2/stringr/R/extract.r              |only
 stringr-0.2/stringr/R/join.r                 |only
 stringr-0.2/stringr/R/length.r               |only
 stringr-0.2/stringr/R/locate.r               |only
 stringr-0.2/stringr/R/match.r                |    9 ++++++---
 stringr-0.2/stringr/R/replace.r              |only
 stringr-0.2/stringr/R/split.r                |only
 stringr-0.2/stringr/R/sub.r                  |only
 stringr-0.2/stringr/TODO                     |only
 stringr-0.2/stringr/inst/doc/introduction.md |only
 stringr-0.2/stringr/man/str_detect.Rd        |    4 ++--
 stringr-0.2/stringr/man/str_dup.Rd           |    4 ++--
 stringr-0.2/stringr/man/str_join.Rd          |    4 ++--
 stringr-0.2/stringr/man/str_length.Rd        |    4 ++--
 stringr-0.2/stringr/man/str_match.Rd         |    4 ++--
 stringr-0.2/stringr/man/str_match_all.Rd     |    4 ++--
 stringr-0.2/stringr/man/str_pad.Rd           |    4 ++--
 stringr-0.2/stringr/man/str_split.Rd         |   21 +++++++++++++++++----
 stringr-0.2/stringr/man/str_split_fixed.Rd   |only
 stringr-0.2/stringr/man/str_sub.Rd           |    4 ++--
 stringr-0.2/stringr/man/str_trim.Rd          |    4 ++--
 stringr-0.2/stringr/tests/test-length.r      |    4 ++++
 stringr-0.2/stringr/tests/test-match.r       |    9 +++++++++
 stringr-0.2/stringr/tests/test-split.r       |only
 stringr-0.2/stringr/tests/test-sub.r         |   12 ++++++++++++
 31 files changed, 71 insertions(+), 29 deletions(-)

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Package nnDiag updated to version 0.0-2 with previous version 0.0-1 dated 2009-10-26

Author: Brian Walters , Zhen Zhang , Andrew O. Finley
Title: k-Nearest Neighbor Diagnostic Tools
Description: A suite of graphical diagnostic tools to evaluate kNN classifications.

Diff between nnDiag versions 0.0-1 dated 2009-10-26 and 0.0-2 dated 2009-11-16

 nnDiag-0.0-1/nnDiag/R/plotters.R               |only
 nnDiag-0.0-1/nnDiag/R/printers.R               |only
 nnDiag-0.0-1/nnDiag/data/FORGRP.tab            |only
 nnDiag-0.0-1/nnDiag/data/VOLUME.tab            |only
 nnDiag-0.0-1/nnDiag/data/VOLUMEnnIndex_k20.tab |only
 nnDiag-0.0-1/nnDiag/man/FORGRP.Rd              |only
 nnDiag-0.0-1/nnDiag/man/VOLUME.Rd              |only
 nnDiag-0.0-1/nnDiag/man/VOLUMEnnIndex_k20.Rd   |only
 nnDiag-0.0-2/nnDiag/DESCRIPTION                |   15 +++---
 nnDiag-0.0-2/nnDiag/NAMESPACE                  |   10 +++-
 nnDiag-0.0-2/nnDiag/R/aoiMaker.R               |only
 nnDiag-0.0-2/nnDiag/R/arealBias.R              |only
 nnDiag-0.0-2/nnDiag/R/bias.R                   |   57 ++++++++++++++++++++++-
 nnDiag-0.0-2/nnDiag/R/categorical.R            |   23 +++++++++
 nnDiag-0.0-2/nnDiag/R/extrapolations.R         |only
 nnDiag-0.0-2/nnDiag/R/grouper.R                |   61 ++++++++++++++++++-------
 nnDiag-0.0-2/nnDiag/R/outInflu.R               |   32 ++++++++++++-
 nnDiag-0.0-2/nnDiag/R/scedast.R                |   40 ++++++++++++++--
 nnDiag-0.0-2/nnDiag/data/LuceForgrp.tab        |only
 nnDiag-0.0-2/nnDiag/data/LuceSubset_Mask.tif   |only
 nnDiag-0.0-2/nnDiag/data/LuceSubset_Tcap.tif   |only
 nnDiag-0.0-2/nnDiag/data/LuceSubset_Volume.tif |only
 nnDiag-0.0-2/nnDiag/data/LuceVolume.tab        |only
 nnDiag-0.0-2/nnDiag/data/LuceVolume_indx.tab   |only
 nnDiag-0.0-2/nnDiag/data/LuceVolume_subset.tab |only
 nnDiag-0.0-2/nnDiag/man/LuceForgrp.Rd          |only
 nnDiag-0.0-2/nnDiag/man/LuceVolume.Rd          |only
 nnDiag-0.0-2/nnDiag/man/LuceVolume_indx.Rd     |only
 nnDiag-0.0-2/nnDiag/man/LuceVolume_subset.Rd   |only
 nnDiag-0.0-2/nnDiag/man/aoiMaker.Rd            |only
 nnDiag-0.0-2/nnDiag/man/arealBias.Rd           |only
 nnDiag-0.0-2/nnDiag/man/bias.Rd                |   44 ++++++++++--------
 nnDiag-0.0-2/nnDiag/man/categorical.Rd         |   18 +++----
 nnDiag-0.0-2/nnDiag/man/extrap.Rd              |only
 nnDiag-0.0-2/nnDiag/man/grouper.Rd             |   33 +++++++------
 nnDiag-0.0-2/nnDiag/man/nnDiag-package.Rd      |   28 -----------
 nnDiag-0.0-2/nnDiag/man/outInflu.Rd            |   26 +++++-----
 nnDiag-0.0-2/nnDiag/man/rmse.Rd                |   12 ++--
 nnDiag-0.0-2/nnDiag/man/scedast.Rd             |   25 ++++------
 39 files changed, 286 insertions(+), 138 deletions(-)

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Package klaR updated to version 0.6-1 with previous version 0.6-0 dated 2009-09-22

Author: Christian Roever, Nils Raabe, Karsten Luebke, Uwe Ligges, Gero Szepannek, Marc Zentgraf
Title: Classification and visualization
Description: Miscellaneous functions for classification and visualization developed at the Fakultaet Statistik, Technische Universitaet Dortmund

Diff between klaR versions 0.6-0 dated 2009-09-22 and 0.6-1 dated 2009-11-16

 Changes-ToDo  |    8 +++-----
 DESCRIPTION   |    8 ++++----
 NAMESPACE     |    3 ++-
 R/kmodes.R    |only
 man/kmodes.Rd |only
 5 files changed, 9 insertions(+), 10 deletions(-)

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Package fpc updated to version 1.2-7 with previous version 1.2-6 dated 2009-08-26

Author: Christian Hennig
Title: Fixed point clusters, clusterwise regression and discriminant plots
Description: Fuzzy and crisp fixed point cluster analysis based on Mahalanobis distance and linear regression fixed point clusters. Semi-explorative, semi-model-based clustering methods, operating on n*p data, do not need prespecification of number of clusters, produce overlapping clusters. Symmetric and asymmetric discriminant projections separate groups optimally, used to visualize the separation of groupings, visual cluster validation. Clusterwise linear regression by normal mixture modeling. Cluster validation statistics for distance based clustering including corrected Rand index. Clusterwise cluster stability assessment. DBSCAN clustering. Interface functions for many clustering methods implemented in R. Note that the use of the package mclust (called by function prabclust) is protected by a special license, see http://www.stat.washington.edu/mclust/license.txt, particularly point 6.

Diff between fpc versions 1.2-6 dated 2009-08-26 and 1.2-7 dated 2009-11-16

 DESCRIPTION              |   12 -
 R/rFace.R                |    5 
 tests/examples.Rout.save |  473 +++++++++++++++++++++++------------------------
 3 files changed, 251 insertions(+), 239 deletions(-)

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Package RPMM updated to version 1.05 with previous version 1.0 dated 2009-09-09

Author: E. Andres Houseman, Sc.D.
Title: Recursively Partitioned Mixture Model
Description: Recursively Partitioned Mixture Model for Beta and Gaussian Mixtures. This is a model-based clustering algorithm that returns a hierarchy of classes, similar to hierarchical clustering, but also similar to finite mixture models.

Diff between RPMM versions 1.0 dated 2009-09-09 and 1.05 dated 2009-11-16

 DESCRIPTION   |    8 -
 R/betaRPMM.R  |    4 
 R/gaussRPMM.R |  287 +++++++++++++++++++++++++++++-----------------------------
 3 files changed, 154 insertions(+), 145 deletions(-)

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New package plsdof with initial version 0.1
Package: plsdof
Type: Package
Title: Degrees of Freedom for Partial Least Squares Regression
Version: 0.1
Date: 2009-11-16
Author: Nicole Kraemer, Mikio L. Braun
Maintainer: Nicole Kraemer
Description: The \code{psldof} package provides Degrees of Freedom estimates for Kernel Partial Least Squares Regression and its kernel extension. The package also provides model selection based on various information criteria (aic, bic, gmdl) and based on cross-validation.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2009-11-16 10:58:31 UTC; kranic
Repository: CRAN
Date/Publication: 2009-11-16 13:19:30

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Package r4ss updated to version 1.01 with previous version 1.0 dated 2009-11-10

Author: Ian Taylor, Ian Stewart, Tommy Garrison, Andre Punt, John Wallace, and other contributors
Title: R code for Stock Synthesis
Description: Functions for reading output, plotting, exploring and manipulating input files for Richard Methot's Stock Synthesis fisheries stock assessment modeling platform.

Diff between r4ss versions 1.0 dated 2009-11-10 and 1.01 dated 2009-11-16

 r4ss-1.0/r4ss/R/lines.sel.R             |only
 r4ss-1.0/r4ss/man/lines.sel.Rd          |only
 r4ss-1.01/r4ss/DESCRIPTION              |   13 -
 r4ss-1.01/r4ss/R/SSv3_output.R          |   19 ++
 r4ss-1.01/r4ss/R/SSv3_plots.R           |  229 ++++++++++++++++----------------
 r4ss-1.01/r4ss/R/sel.line.R             |only
 r4ss-1.01/r4ss/R/selfit.R               |    8 -
 r4ss-1.01/r4ss/R/update_r4ss_files.R    |only
 r4ss-1.01/r4ss/inst                     |only
 r4ss-1.01/r4ss/man/SS_changepars.Rd     |    2 
 r4ss-1.01/r4ss/man/SS_profile.Rd        |   27 +--
 r4ss-1.01/r4ss/man/SS_recdevs.Rd        |    8 -
 r4ss-1.01/r4ss/man/SSv3_FishGraph.Rd    |   11 -
 r4ss-1.01/r4ss/man/SSv3_output.Rd       |   16 +-
 r4ss-1.01/r4ss/man/SSv3_plotpars.Rd     |   14 +
 r4ss-1.01/r4ss/man/SSv3_plots.Rd        |   42 +++--
 r4ss-1.01/r4ss/man/r4ss-package.Rd      |only
 r4ss-1.01/r4ss/man/sel.line.Rd          |only
 r4ss-1.01/r4ss/man/selfit.Rd            |    9 -
 r4ss-1.01/r4ss/man/update_r4ss_files.Rd |only
 20 files changed, 219 insertions(+), 179 deletions(-)

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New package ibr with initial version 1.2
Package: ibr
Version: 1.2
Date: 2008-11-12
Title: Iterative Bias Reduction
Author: Pierre-Andre Cornillon, Nicolas Hengartner, Eric Matzner-Lober
Maintainer: Pierre-Andre Cornillon
Depends: fields
Description: an R package for multivariate smoothing
License: GPL (>= 2)
Packaged: 2009-11-16 09:36:51 UTC; pac
Repository: CRAN
Date/Publication: 2009-11-16 11:09:54

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New package mutatr with initial version 0.1
Package: mutatr
Type: Package
Title: Mutable objects for R.
Version: 0.1
Author: Hadley Wickham
Maintainer: Hadley Wickham
Description: Mutable prototype based objects with multiple inheritance.
URL: http://had.co.nz/
Depends: digest
License: GPL
LazyData: true
Collate: 'ancestors.r' 'core.r' 'object.r' 'object-inheritance.r' 'utils.r'
Packaged: 2009-11-16 05:09:53 UTC; hadley
Repository: CRAN
Date/Publication: 2009-11-16 07:44:57

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Package deldir updated to version 0.0-10 with previous version 0.0-9 dated 2009-11-04

Author: Rolf Turner
Title: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation.
Description: Calculates the Delaunay triangulation and the Dirichlet or Voronoi tessellation (with respect to the entire plane) of a planar point set.

Diff between deldir versions 0.0-9 dated 2009-11-04 and 0.0-10 dated 2009-11-16

 deldir-0.0-10/deldir/ChangeLog             |    7 +++++++
 deldir-0.0-10/deldir/DESCRIPTION           |    8 ++++----
 deldir-0.0-10/deldir/R/First.R             |    2 ++
 deldir-0.0-10/deldir/R/deldir.R            |    4 ++--
 deldir-0.0-10/deldir/inst/ratfor.discarded |only
 deldir-0.0-10/deldir/man/deldir.Rd         |   24 +++++++++++++++++-------
 deldir-0.0-9/deldir/inst/ratfor/inddup.r   |only
 deldir-0.0-9/deldir/src/inddup.f           |only
 8 files changed, 32 insertions(+), 13 deletions(-)

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New package BoolNet with initial version 1.3
Package: BoolNet
Type: Package
Title: Generation, reconstruction, simulation and analysis of Boolean networks
Version: 1.3
Date: 2009-10-02
Author: Christoph Muessel, Dao Zhou, Hans Kestler
Maintainer: Hans Kestler
Suggests: igraph
Description: Provides methods to reconstruct and generate Boolean networks, and to analyze and visualize attractors in Boolean networks
License: Artistic-2.0
LazyLoad: yes
Packaged: 2009-11-15 20:04:20 UTC; muessel
Repository: CRAN
Date/Publication: 2009-11-16 07:44:50

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