Author: Christophe Ambroise, Gilles Grasseau, Mark Hoebeke, Pierre
Latouche, Vincent Miele, Franck Picard
Title: Random graph clustering
Description: Routines for the analysis (unsupervised clustering) of
networks using MIXtures of Erdos-Renyi random graphs
Diff between mixer versions 0.2 dated 2008-10-15 and 1.0 dated 2009-11-19
mixer-0.2/mixer/man/Gplot.Rd |only mixer-0.2/mixer/man/blog.Rd |only mixer-0.2/mixer/man/getAdjacencyMatrix-methods.Rd |only mixer-0.2/mixer/man/getAdjacencyMatrix.Rd |only mixer-0.2/mixer/man/getEdges-methods.Rd |only mixer-0.2/mixer/man/getEdges.Rd |only mixer-0.2/mixer/man/graph.affiliation.Rd |only mixer-0.2/mixer/man/initialize-methods.Rd |only mixer-0.2/mixer/man/macaque.Rd |only mixer-0.2/mixer/man/mixer.Rd |only mixer-0.2/mixer/man/plot.mixer.Rd |only mixer-0.2/mixer/man/spmgraph-class.Rd |only mixer-1.0/mixer/DESCRIPTION | 19 mixer-1.0/mixer/NAMESPACE | 13 mixer-1.0/mixer/NEWS |only mixer-1.0/mixer/R/Gplot-internals.R | 831 ++++++++++++++++++++-- mixer-1.0/mixer/R/Gplot.R | 598 ++++++++++++--- mixer-1.0/mixer/R/bayesianMixer.R | 157 ++-- mixer-1.0/mixer/R/init.R |only mixer-1.0/mixer/R/mixer.R | 362 +++++++-- mixer-1.0/mixer/inst/CITATION | 80 +- mixer-1.0/mixer/man/a_mixer.Rd |only mixer-1.0/mixer/man/b_graph.affiliation.Rd |only mixer-1.0/mixer/man/c_plot.mixer.Rd |only mixer-1.0/mixer/man/d_getModel.Rd |only mixer-1.0/mixer/man/d_getModel.mixer.Rd |only mixer-1.0/mixer/man/e_setSeed.Rd |only mixer-1.0/mixer/man/t_blog.Rd |only mixer-1.0/mixer/man/u_macaque.Rd |only mixer-1.0/mixer/src/Makevars | 17 mixer-1.0/mixer/src/SOCEm.h | 2 mixer-1.0/mixer/src/SparseMatrix.h | 2 mixer-1.0/mixer/src/VEstep_R.cc |only mixer-1.0/mixer/src/ermg_R.cc | 5 mixer-1.0/mixer/src/ermgo_R.cc | 7 mixer-1.0/mixer/src/init_ermg_R.cc | 7 mixer-1.0/mixer/src/matrix.cpp |only mixer-1.0/mixer/src/matrix.h |only mixer-1.0/mixer/src/util.h |only 39 files changed, 1734 insertions(+), 366 deletions(-)
Author: Venkatraman E. Seshan
Title: Clinical Trial Design and Data Analysis Functions
Description: Utilities to make your clinical collaborations easier if
not fun.
Diff between clinfun versions 0.8.5 dated 2009-07-18 and 0.8.6 dated 2009-11-19
CHANGES | 6 ++++++ DESCRIPTION | 8 ++++---- R/pselect.R | 18 ++++++++++-------- man/pselect.Rd | 11 +++++++---- 4 files changed, 27 insertions(+), 16 deletions(-)
Author: Karline Soetaert
Diff between marelacTeaching versions 1.0 dated 2009-09-07 and 1.1 dated 2009-11-19
More information about marelacTeaching at CRAN
Title: Datasets and tutorials for use in aquatic sciences
Description: Datasets and tutorials for use in the MArine, Riverine,
Estuarine, LAcustrine and Coastal sciences
marelacTeaching-1.0/marelacTeaching/R/addMarelacMenu.R |only
marelacTeaching-1.0/marelacTeaching/R/sethelp.R |only
marelacTeaching-1.0/marelacTeaching/inst/lecture |only
marelacTeaching-1.0/marelacTeaching/man/addMarelacMenu.Rd |only
marelacTeaching-1.0/marelacTeaching/man/sethelp.Rd |only
marelacTeaching-1.1/marelacTeaching/DESCRIPTION | 11
marelacTeaching-1.1/marelacTeaching/NAMESPACE | 5
marelacTeaching-1.1/marelacTeaching/R/zzz.R | 4
marelacTeaching-1.1/marelacTeaching/inst/doc/Answers.pdf |binary
marelacTeaching-1.1/marelacTeaching/inst/doc/UsingR.pdf | 1909 ++++++-------
marelacTeaching-1.1/marelacTeaching/inst/doc/index.html | 4
marelacTeaching-1.1/marelacTeaching/inst/doc/lecture |only
marelacTeaching-1.1/marelacTeaching/inst/doc/vignettes.bib | 349 +-
marelacTeaching-1.1/marelacTeaching/man/marelacTeaching.Rd | 12
14 files changed, 1165 insertions(+), 1129 deletions(-)
Permanent link
Author: Edzer Pebesma
Diff between intamap versions 1.2-18 dated 2009-09-28 and 1.3-1 dated 2009-11-19
Title: procedures for automated interpolation
Description: A package that provides classes and methods for automated
spatial interpolation.
DESCRIPTION | 9
NAMESPACE | 2
R/init.R | 6
R/interpolate.R | 31 +
R/pointKriging.R | 11
R/spCopPred.R | 771 +++++++++++++++++++++++-------------------------
R/transGaussian.R | 2
man/bayesCopula.Rd | 5
man/getIntamapParams.Rd | 3
tests/interpolate.R | 2
10 files changed, 417 insertions(+), 425 deletions(-)
Author: Achim Zeileis, Gabor Grothendieck
Title: Z's ordered observations
Description: An S3 class with methods for totally ordered indexed
observations. It is particularly aimed at irregular time series
of numeric vectors/matrices and factors. zoo's key design goals
are independence of a particular index/date/time class and
consistency with ts and base R by providing methods to extend
standard generics.
Diff between zoo versions 1.6-0 dated 2009-11-17 and 1.6-1 dated 2009-11-19
DESCRIPTION | 8 NAMESPACE | 2 NEWS | 12 R/yearmon.R | 3 R/yearqtr.R | 3 inst/doc/zoo-faq.pdf | 10 inst/doc/zoo-quickref.pdf | 14 inst/doc/zoo-refcard.pdf |binary inst/doc/zoo.Rnw | 3 inst/doc/zoo.pdf | 823 ++++++++++++++++++++++------------------------ man/ORDER.Rd | 6 man/yearmon.Rd | 1 man/yearqtr.Rd | 1 man/zoo.Rd | 4 14 files changed, 454 insertions(+), 436 deletions(-)
Author: Richard D. Morey
Title: GUI implementing Bayesian working memory models
Description: A GUI R implementation of hierarchical Bayesian models of
working memory, used for analyzing change detection data.
Diff between WMCapacity versions 0.9 dated 2009-10-05 and 0.9.1 dated 2009-11-19
DESCRIPTION | 8 ++++---- R/WMCapacity.R | 2 +- R/WMCapacityGUI.R | 3 ++- R/output.R | 7 +++++-- man/WMCapacityGUI.Rd | 4 +++- 5 files changed, 15 insertions(+), 9 deletions(-)
Author: David Clifford, Glenn Stone
Title: Variable Penalty Dynamic Time Warping
Description: Variable Penalty Dynamic Time Warping for aligning GC-MS
chromatograms to a master signal and more. With the appropriate
penalty this method performs good alignment without altering
the shape of peaks in GC-MS data.
Diff between VPdtw versions 2.1-3 dated 2009-11-18 and 2.1-4 dated 2009-11-19
DESCRIPTION | 8 ++++---- R/VPdtw.R | 4 ++-- inst/CITATION | 2 +- src/matrix.cc | 12 ------------ src/matrix.h | 9 +++++++-- 5 files changed, 14 insertions(+), 21 deletions(-)
Author: Martin Maechler
Diff between VLMC versions 1.3-10 dated 2006-09-18 and 1.3-11 dated 2009-11-19
Title: VLMC -- Variable Length Markov Chains
Description: Functions, Classes & Methods for estimation, prediction,
and simulation (bootstrap) of VLMC -- Variable Length Markov
Chain -- Models
ChangeLog | 7 ++
DESCRIPTION | 17 ++---
R/vlmc.R | 4 -
man/as.dendrogram.vlmc.Rd | 5 -
man/simulate.vlmc.Rd | 2
tests/iid-cutoff.Rout.save | 153 ++++-----------------------------------------
6 files changed, 35 insertions(+), 153 deletions(-)
Author: Uwe Ligges
Diff between tuneR versions 0.2-11 dated 2009-10-15 and 0.2-12 dated 2009-11-19
Title: Analysis of music
Description: Collection of tools to analyze music, handling wave files,
transcription, ...
tuneR-0.2-11/tuneR/.project |only
tuneR-0.2-12/tuneR/DESCRIPTION | 8 ++++----
tuneR-0.2-12/tuneR/R/readWave.R | 17 +++++++++++++----
tuneR-0.2-12/tuneR/R/writeWave.R | 12 +++++++++++-
4 files changed, 28 insertions(+), 9 deletions(-)
Author: Jeff Hallman
Diff between tis versions 1.7 dated 2009-07-28 and 1.8 dated 2009-11-19
Title: Time Indexes and Time Indexed Series
Description: Functions and S3 classes for time indexes and time indexed
series, which are compatible with FAME frequencies.
DESCRIPTION | 7 ++++---
NEWS | 5 +++++
R/fortify.tis.R | 22 ++++++++++++----------
man/fortify.tis.Rd | 22 ++++++++++++++--------
4 files changed, 35 insertions(+), 21 deletions(-)
Author: Claus Dethlefsen, Soren Lundbye-Christensen and Anette Luther
Christensen
Title: State Space Models in R
Description: A glm-like formula language to define dynamic generalized
linear models (state space models). Includes functions for
Kalman filtering and smoothing. Estimation of variance matrices
can be perfomred using the EM algorithm in case of Gaussian
models. Read help(sspir) to get started.
Diff between sspir versions 0.2.7 dated 2009-08-10 and 0.2.8 dated 2009-11-19
CHANGES | 38 ++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 8 ++++---- R/kfs.R | 11 +++++++---- 3 files changed, 49 insertions(+), 8 deletions(-)
Author: Patrick Mair, Eric Wu
Title: R/EQS Interface
Description: This package contains the function run.eqs() which calls
an EQS script file, executes the EQS estimation, and, finally,
imports the results as R objects. These two steps can be
performed separately: call.eqs() calls and executes EQS,
whereas read.eqs() imports existing EQS outputs as objects into
R.
Diff between REQS versions 0.8-4 dated 2009-08-30 and 0.8-5 dated 2009-11-19
DESCRIPTION | 8 ++++---- R/call.eqs.R | 7 ++++++- R/run.eqs.r | 6 +++--- man/call.eqs.rd | 2 +- man/run.eqs.rd | 2 +- 5 files changed, 15 insertions(+), 10 deletions(-)
Author: Simon Jackman, with contributions from Alex Tahk, Achim
Zeileis, Christina Maimone and Jim Fearon
Title: Political Science Computational Laboratory, Stanford University
Description: Bayesian analysis of item-response theory (IRT) models,
roll call analysis; computing highest density regions; maximum
likelihood estimation of zero-inflated and hurdle models for
count data; goodness-of-fit measures for GLMs; data sets used
in writing and teaching at the Political Science Computational
Laboratory; seats-votes curves.
Diff between pscl versions 1.03 dated 2009-01-27 and 1.03.2 dated 2009-11-19
pscl-1.03.2/pscl/COPYRIGHTS | 4 - pscl-1.03.2/pscl/DESCRIPTION | 22 +++-- pscl-1.03.2/pscl/HISTORY | 5 + pscl-1.03.2/pscl/R/hurdle.R | 44 ++++++++--- pscl-1.03.2/pscl/R/ideal.r | 20 +---- pscl-1.03.2/pscl/R/vuong.R | 127 ++++++++++++++++----------------- pscl-1.03.2/pscl/R/zeroinfl.R | 38 +++++++-- pscl-1.03.2/pscl/R/zzz.R |only pscl-1.03.2/pscl/inst/doc/countreg.Rnw | 2 pscl-1.03.2/pscl/inst/doc/countreg.pdf |binary pscl-1.03.2/pscl/man/bioChemists.Rd | 4 - pscl-1.03.2/pscl/man/hurdle.Rd | 1 pscl-1.03.2/pscl/man/ideal.Rd | 42 +++++----- pscl-1.03.2/pscl/man/zeroinfl.Rd | 2 pscl-1.03/pscl/inst/doc/auto |only 15 files changed, 174 insertions(+), 137 deletions(-)
Author: Harold C. Doran
Title: Miscellaneous Psychometric Analyses
Description: Miscellaneous functions for psychometric problems
Diff between MiscPsycho versions 1.4 dated 2009-03-10 and 1.5 dated 2009-11-19
MiscPsycho-1.4/MiscPsycho/R/alpha.Summary.R |only MiscPsycho-1.4/MiscPsycho/Read-and-delete-me |only MiscPsycho-1.4/MiscPsycho/inst/doc/stock_lord.pdf |only MiscPsycho-1.4/MiscPsycho/man/alpha.Summary.Rd |only MiscPsycho-1.4/MiscPsycho/man/fit.Stats.Rd |only MiscPsycho-1.4/MiscPsycho/man/pb.Rd |only MiscPsycho-1.4/MiscPsycho/man/piPlot.Rd |only MiscPsycho-1.5/MiscPsycho/DESCRIPTION | 26 +-- MiscPsycho-1.5/MiscPsycho/NAMESPACE |only MiscPsycho-1.5/MiscPsycho/R/SL.R | 20 -- MiscPsycho-1.5/MiscPsycho/R/SL.default.R |only MiscPsycho-1.5/MiscPsycho/R/SLderivs.R | 139 +++++++++--------- MiscPsycho-1.5/MiscPsycho/R/SSI.R |only MiscPsycho-1.5/MiscPsycho/R/SSI.default.R |only MiscPsycho-1.5/MiscPsycho/R/SSI.fit.R |only MiscPsycho-1.5/MiscPsycho/R/SSI.formula.R |only MiscPsycho-1.5/MiscPsycho/R/alpha.R | 10 - MiscPsycho-1.5/MiscPsycho/R/alpha.default.R |only MiscPsycho-1.5/MiscPsycho/R/alpha.fit.R |only MiscPsycho-1.5/MiscPsycho/R/alpha.formula.R |only MiscPsycho-1.5/MiscPsycho/R/cheat.R | 107 ------------- MiscPsycho-1.5/MiscPsycho/R/cheat.default.R |only MiscPsycho-1.5/MiscPsycho/R/cheat.fit.R |only MiscPsycho-1.5/MiscPsycho/R/cheat.formula.R |only MiscPsycho-1.5/MiscPsycho/R/choose.M.R | 2 MiscPsycho-1.5/MiscPsycho/R/class.acc.R | 2 MiscPsycho-1.5/MiscPsycho/R/classical.R | 8 - MiscPsycho-1.5/MiscPsycho/R/classical.default.R |only MiscPsycho-1.5/MiscPsycho/R/classical.formula.R |only MiscPsycho-1.5/MiscPsycho/R/irt.ability.R | 2 MiscPsycho-1.5/MiscPsycho/R/jml.R | 37 ---- MiscPsycho-1.5/MiscPsycho/R/jml.default.R |only MiscPsycho-1.5/MiscPsycho/R/jml.fit.R |only MiscPsycho-1.5/MiscPsycho/R/jml.formula.R |only MiscPsycho-1.5/MiscPsycho/R/pb.R | 2 MiscPsycho-1.5/MiscPsycho/R/piPlot.R | 2 MiscPsycho-1.5/MiscPsycho/R/plaus.val.R | 2 MiscPsycho-1.5/MiscPsycho/R/plot.jml.R |only MiscPsycho-1.5/MiscPsycho/R/posterior.R | 2 MiscPsycho-1.5/MiscPsycho/R/print.SL.R |only MiscPsycho-1.5/MiscPsycho/R/print.SSI.R |only MiscPsycho-1.5/MiscPsycho/R/print.alpha.R |only MiscPsycho-1.5/MiscPsycho/R/print.cheat.R |only MiscPsycho-1.5/MiscPsycho/R/print.classical.R |only MiscPsycho-1.5/MiscPsycho/R/print.jml.R |only MiscPsycho-1.5/MiscPsycho/R/print.scoreCon.R |only MiscPsycho-1.5/MiscPsycho/R/print.summary.SL.R |only MiscPsycho-1.5/MiscPsycho/R/print.summary.SSI.R |only MiscPsycho-1.5/MiscPsycho/R/print.summary.alpha.R |only MiscPsycho-1.5/MiscPsycho/R/print.summary.cheat.R |only MiscPsycho-1.5/MiscPsycho/R/print.summary.classical.R |only MiscPsycho-1.5/MiscPsycho/R/print.summary.jml.R |only MiscPsycho-1.5/MiscPsycho/R/print.summary.scoreCon.R |only MiscPsycho-1.5/MiscPsycho/R/scoreCon.R | 20 -- MiscPsycho-1.5/MiscPsycho/R/scoreCon.default.R |only MiscPsycho-1.5/MiscPsycho/R/scoreCon.fit.R |only MiscPsycho-1.5/MiscPsycho/R/simRasch.R | 2 MiscPsycho-1.5/MiscPsycho/R/stringMatch.R | 2 MiscPsycho-1.5/MiscPsycho/R/stringProbs.R | 2 MiscPsycho-1.5/MiscPsycho/R/summary.SL.R |only MiscPsycho-1.5/MiscPsycho/R/summary.SSI.R |only MiscPsycho-1.5/MiscPsycho/R/summary.alpha.R |only MiscPsycho-1.5/MiscPsycho/R/summary.cheat.R |only MiscPsycho-1.5/MiscPsycho/R/summary.classical.R |only MiscPsycho-1.5/MiscPsycho/R/summary.jml.R |only MiscPsycho-1.5/MiscPsycho/R/summary.scoreCon.R |only MiscPsycho-1.5/MiscPsycho/R/wrongProb.R |only MiscPsycho-1.5/MiscPsycho/R/wrongProb.default.R |only MiscPsycho-1.5/MiscPsycho/R/wrongProb.formula.R |only MiscPsycho-1.5/MiscPsycho/inst/doc/MP.Rnw |only MiscPsycho-1.5/MiscPsycho/inst/doc/MP.pdf |binary MiscPsycho-1.5/MiscPsycho/man/MiscPsycho-package.Rd | 33 +--- MiscPsycho-1.5/MiscPsycho/man/SL.Rd | 21 +- MiscPsycho-1.5/MiscPsycho/man/SSI.Rd |only MiscPsycho-1.5/MiscPsycho/man/alpha.Rd | 49 +++++- MiscPsycho-1.5/MiscPsycho/man/cheat.Rd | 81 ++++++++-- MiscPsycho-1.5/MiscPsycho/man/classical.Rd | 36 +++- MiscPsycho-1.5/MiscPsycho/man/jml.Rd | 79 +++++++--- MiscPsycho-1.5/MiscPsycho/man/posterior.Rd | 1 MiscPsycho-1.5/MiscPsycho/man/scoreCon.Rd | 38 +++- MiscPsycho-1.5/MiscPsycho/man/simRasch.Rd | 4 MiscPsycho-1.5/MiscPsycho/man/theta.max.Rd | 2 MiscPsycho-1.5/MiscPsycho/man/wrongProb.Rd |only 83 files changed, 361 insertions(+), 370 deletions(-)
Author: S scripts originally by Jan Beran
Diff between longmemo versions 0.9-6 dated 2009-01-11 and 0.9-7 dated 2009-11-19
Title: Statistics for Long-Memory Processes (Jan Beran) -- Data and
Functions
Description: Datasets and Functionality from the textbook Jan Beran
(1994). Statistics for Long-Memory Processes; Chapman \& Hall.
ChangeLog | 6 ++++++
DESCRIPTION | 17 ++++++++++-------
man/specARIMA.Rd | 4 ++--
man/specFGN.Rd | 2 +-
4 files changed, 19 insertions(+), 10 deletions(-)
Author: Jeff Hallman
Diff between fame versions 2.6 dated 2009-04-14 and 2.7 dated 2009-11-19
Title: Interface for FAME time series database
Description: Read and write FAME databases.
DESCRIPTION | 9 +++--
NEWS | 8 +++++
R/fame.R | 79 ++++++++++++++++++++++++++++++----------------------
configure.win |only
man/getfame.Rd | 16 +++++-----
man/lowLevelFame.Rd | 15 ++++++---
man/osUtilities.Rd | 2 -
src/Makevars.win | 15 +++++++--
src/chli.c | 76 +++++++++++++++++++++++++-------------------------
9 files changed, 127 insertions(+), 93 deletions(-)
Author: Achim Zeileis, Kurt Hornik
Title: CRAN Task Views
Description: Server-side and client-side tools for task views to
CRAN-style repositories
Diff between ctv versions 0.5-4 dated 2009-09-30 and 0.5-6 dated 2009-11-19
DESCRIPTION | 8 +- NEWS | 17 +++++ R/ctv-client.R | 6 + R/ctv-server.R | 1 inst/ctv/Bayesian.ctv | 15 +++- inst/ctv/ChemPhys.ctv | 7 +- inst/ctv/Cluster.ctv | 104 +++++++++++++++++++++++++++------- inst/ctv/Distributions.ctv | 31 +++++++--- inst/ctv/Econometrics.ctv | 23 +++---- inst/ctv/Environmetrics.ctv | 56 +++++++++++++----- inst/ctv/Finance.ctv | 18 +++-- inst/ctv/Genetics.ctv | 6 - inst/ctv/Graphics.ctv | 4 - inst/ctv/HighPerformanceComputing.ctv | 31 +++++----- inst/ctv/MachineLearning.ctv | 7 -- inst/ctv/MedicalImaging.ctv | 3 inst/ctv/Multivariate.ctv | 14 ++-- inst/ctv/Pharmacokinetics.ctv | 20 +++--- inst/ctv/Psychometrics.ctv | 16 +++-- inst/ctv/Robust.ctv | 6 - inst/ctv/SocialSciences.ctv | 23 +++++-- inst/ctv/Spatial.ctv | 25 ++++---- inst/ctv/Survival.ctv | 10 --- inst/ctv/TimeSeries.ctv | 26 +++++--- inst/ctv/gR.ctv | 10 --- inst/doc/ctv-howto.pdf |binary 26 files changed, 322 insertions(+), 165 deletions(-)
Author: Michael Friendly and John Fox
Title: Generalized Canonical Discriminant Analysis
Description: Functions for computing and graphing canonical
discriminant analyses.
Diff between candisc versions 0.5-15 dated 2009-06-14 and 0.5-16 dated 2009-11-19
DESCRIPTION | 12 ++++++------ demo |only man/candisc-package.Rd | 4 ++-- man/heplot.candisc.Rd | 14 ++++++++++++++ 4 files changed, 22 insertions(+), 8 deletions(-)