Author: Original code by many authors, notably Peter Rousseeuw and
Christophe Croux, see file 'Copyrights'; Valentin Todorov
Diff between robustbase versions 0.5-0 dated 2009-11-18 and 0.5-0-1 dated 2009-11-22
Title: Basic Robust Statistics
Description: "Essential" Robust Statistics. The goal is to provide
tools allowing to analyze data with robust methods. This
includes regression methodology including model selections and
multivariate statistics where we strive to cover the book
"Robust Statistics, Theory and Methods" by Maronna, Martin and
Yohai; Wiley 2006.
ChangeLog | 6 ++++++
DESCRIPTION | 8 ++++----
tests/mc-strict.R | 5 +++--
3 files changed, 13 insertions(+), 6 deletions(-)
Author: Peter Langfelder
Diff between dynamicTreeCut versions 1.20 dated 2009-02-05 and 1.21 dated 2009-11-22
More information about dynamicTreeCut at CRAN
Title: Methods for detection of clusters in hierarchical clustering
dendrograms.
Description: Contains methods for detection of clusters in hierarchical
clustering dendrograms.
dynamicTreeCut-1.20/dynamicTreeCut/R/treeCut.R |only
dynamicTreeCut-1.21/dynamicTreeCut/Changelog | 5 ++
dynamicTreeCut-1.21/dynamicTreeCut/DESCRIPTION | 23 ++++++----
dynamicTreeCut-1.21/dynamicTreeCut/R/TreeCut.R |only
dynamicTreeCut-1.21/dynamicTreeCut/R/cutreeWrapper.R | 19 ++++++++
dynamicTreeCut-1.21/dynamicTreeCut/man/dynamicTreeCut-package.Rd | 5 +-
dynamicTreeCut-1.21/dynamicTreeCut/man/merge2Clusters.Rd |only
7 files changed, 41 insertions(+), 11 deletions(-)
Permanent link
Author: Compiled by Adrian Trapletti
Diff between tseries versions 0.10-21 dated 2009-10-04 and 0.10-22 dated 2009-11-22
Title: Time series analysis and computational finance
Description: Package for time series analysis and computational finance
ChangeLog | 7 +++++++
DESCRIPTION | 8 ++++----
R/finance.R | 28 ++++++++++++++--------------
3 files changed, 25 insertions(+), 18 deletions(-)
Author: S original by Trevor Hastie & Robert Tibshirani. R port by
Friedrich Leisch, Kurt Hornik and Brian D. Ripley.
Title: Mixture and flexible discriminant analysis
Description: Mixture and flexible discriminant analysis, multivariate
additive regression splines (MARS), BRUTO, ...
Diff between mda versions 0.3-4 dated 2009-01-04 and 0.3-5 dated 2009-11-22
mda-0.3-4/mda/R/zzz.R |only mda-0.3-5/mda/ChangeLog | 14 ++++++++++++++ mda-0.3-5/mda/DESCRIPTION | 12 +++++++----- mda-0.3-5/mda/R/mda.R | 2 -- mda-0.3-5/mda/man/bruto.Rd | 2 +- mda-0.3-5/mda/man/fda.Rd | 4 ++-- mda-0.3-5/mda/man/mars.Rd | 2 +- mda-0.3-5/mda/man/mda.Rd | 6 +++--- mda-0.3-5/mda/man/predict.fda.Rd | 2 +- mda-0.3-5/mda/man/predict.mda.Rd | 2 +- 10 files changed, 30 insertions(+), 16 deletions(-)
Author: Kurt Hornik, with contributions from Walter Boehm
Title: Cluster ensembles
Description: CLUster Ensembles
Diff between clue versions 0.3-32 dated 2009-10-18 and 0.3-33 dated 2009-11-22
DESCRIPTION | 8 ++++---- R/AAA.R | 5 +++++ R/consensus.R | 3 --- R/medoid.R | 20 ++++++++++---------- R/partition.R | 6 +++--- R/pclust.R | 46 +++++++++++++++++++++++----------------------- R/predict.R | 2 +- R/registration.R | 22 +++++++++++----------- R/sumt.R | 9 ++++----- R/ultrametric.R | 2 +- R/utilities.R | 12 +++++++++--- inst/doc/clue.pdf |binary 12 files changed, 71 insertions(+), 64 deletions(-)
Author: Friedrich Leisch and Andreas Weingessel and Kurt Hornik
Title: Generation of Artificial Binary Data
Description: Generation of correlated artificial binary data.
Diff between bindata versions 0.9-16 dated 2009-10-08 and 0.9-17 dated 2009-11-22
bindata-0.9-16/bindata/R/zzz.R |only bindata-0.9-17/bindata/DESCRIPTION | 8 ++++---- 2 files changed, 4 insertions(+), 4 deletions(-)
Author: Robert B. Gramacy
Diff between tgp versions 2.2-3 dated 2009-07-26 and 2.2-4 dated 2009-11-22
Title: Bayesian treed Gaussian process models
Description: Bayesian nonstationary, semiparametric nonlinear
regression and design by treed Gaussian processes with jumps to
the limiting linear model (LLM). Special cases also
implemented include Bayesian linear models, CART, treed linear
models, stationary separable and isotropic Gaussian processes.
Provides 1-d and 2-d plotting functions (with projection and
slice capabilities) and tree drawing, designed for
visualization of tgp-class output. Sensitivity analysis and
multi-resolution models are supported. Sequential experimental
design and adaptive sampling functions are also provided,
including ALM, ALC, and expected improvement. The latter
supports derivative-free optimization of noisy black-box
functions.
tgp-2.2-3/tgp/tgp_2.2-2.tar.gz |only
tgp-2.2-4/tgp/._ChangeLog |binary
tgp-2.2-4/tgp/._DESCRIPTION |binary
tgp-2.2-4/tgp/._INDEX |binary
tgp-2.2-4/tgp/._LICENSE |binary
tgp-2.2-4/tgp/._R |binary
tgp-2.2-4/tgp/._README |binary
tgp-2.2-4/tgp/._data |binary
tgp-2.2-4/tgp/._demo |binary
tgp-2.2-4/tgp/._inst |binary
tgp-2.2-4/tgp/._man |binary
tgp-2.2-4/tgp/._src |binary
tgp-2.2-4/tgp/._tgp_2.2-2.tar.gz |only
tgp-2.2-4/tgp/ChangeLog | 14 ++++++++++++++
tgp-2.2-4/tgp/DESCRIPTION | 6 +++---
tgp-2.2-4/tgp/R/check.matrix.R | 4 ++--
tgp-2.2-4/tgp/R/predict.tgp.R | 2 +-
tgp-2.2-4/tgp/R/tgp.R | 13 +++++++++++--
tgp-2.2-4/tgp/data/._exp2d.rda |binary
tgp-2.2-4/tgp/inst/._.DS_Store |binary
tgp-2.2-4/tgp/inst/._doc |binary
tgp-2.2-4/tgp/man/interp.loess.Rd | 4 ++--
tgp-2.2-4/tgp/man/optim.tgp.Rd | 2 +-
tgp-2.2-4/tgp/man/plot.tgp.Rd | 6 +++---
tgp-2.2-4/tgp/man/tgp.default.params.Rd | 8 +++++---
25 files changed, 42 insertions(+), 17 deletions(-)
Author: Alberto Cassese, Marta Blangiardo
Title: Synthesizing List of Differentially Expressed Features
Description: The package performs two tests to evaluate if the
experiments are associated and returns a list of interesting
features common to all the experiments.
Diff between sdef versions 1.2 dated 2009-09-04 and 1.3 dated 2009-11-22
sdef-1.2/sdef/R/extractGenes.R.R |only sdef-1.2/sdef/R/extractGenes.T.R |only sdef-1.2/sdef/man/extractGenes.R.Rd |only sdef-1.2/sdef/man/extractGenes.T.Rd |only sdef-1.3/sdef/DESCRIPTION | 8 - sdef-1.3/sdef/R/Tmc.R | 25 +-- sdef-1.3/sdef/R/baymod.R | 35 ++--- sdef-1.3/sdef/R/createTable.R | 89 +++++++++++-- sdef-1.3/sdef/R/extractFeatures.R.R |only sdef-1.3/sdef/R/extractFeatures.T.R |only sdef-1.3/sdef/R/ratio.R | 48 +++---- sdef-1.3/sdef/R/sdef-internal.R |only sdef-1.3/sdef/data |only sdef-1.3/sdef/man/Liver.Muscle.Rd |only sdef-1.3/sdef/man/Tmc.Rd | 109 +--------------- sdef-1.3/sdef/man/baymod.Rd | 186 --------------------------- sdef-1.3/sdef/man/createTable.Rd | 78 +---------- sdef-1.3/sdef/man/extractFeatures.R.Rd |only sdef-1.3/sdef/man/extractFeatures.T.Rd |only sdef-1.3/sdef/man/ratio.Rd | 222 +-------------------------------- sdef-1.3/sdef/man/sdef-package.Rd | 6 sdef-1.3/sdef/man/simulation.Rd | 77 ----------- sdef-1.3/sdef/man/simulation.indep.Rd | 53 ------- 23 files changed, 172 insertions(+), 764 deletions(-)
Author: Romain Francois
Diff between parser versions 0.0-3 dated 2009-07-30 and 0.0-5 dated 2009-11-22
Title: Detailed R source code parser
Description: detailed source code parser, based on the standard R
parser but organizing the information differently
DESCRIPTION | 14 ++++++--------
NEWS |only
R/parser.R | 36 ++++++++++++++++++++++++++++++++----
man/parser-package.Rd | 4 ++--
4 files changed, 40 insertions(+), 14 deletions(-)
Author: CHARLOTTE MAIA
Title: Object Oriented Statistical Programming
Description: A platform for, and collection of tools for, object
oriented statistical programming in R.
Diff between oosp versions 0.1.0 dated 2009-08-20 and 0.2.2 dated 2009-11-22
oosp-0.1.0/oosp/R/component.r |only oosp-0.1.0/oosp/R/loop.r |only oosp-0.1.0/oosp/R/oosp.r |only oosp-0.1.0/oosp/man/equals.compenv.Rd |only oosp-0.1.0/oosp/man/is.hashed.Rd |only oosp-0.1.0/oosp/man/loop.Rd |only oosp-0.1.0/oosp/man/oospaslist.compenv.Rd |only oosp-0.1.0/oosp/man/oospbridges.Rd |only oosp-0.1.0/oosp/man/oospdefaults.Rd |only oosp-0.1.0/oosp/man/oospgenerics.Rd |only oosp-0.1.0/oosp/man/oospprint.compenv.Rd |only oosp-0.2.2/oosp/DESCRIPTION | 17 ++---- oosp-0.2.2/oosp/R/class.r |only oosp-0.2.2/oosp/R/compenv.r | 82 +++++++++--------------------- oosp-0.2.2/oosp/R/function.r | 30 +++------- oosp-0.2.2/oosp/R/generic.r | 28 ++++++++-- oosp-0.2.2/oosp/R/init.r |only oosp-0.2.2/oosp/R/method.r |only oosp-0.2.2/oosp/R/misc.r |only oosp-0.2.2/oosp/R/object.r | 39 +++++++++++++- oosp-0.2.2/oosp/R/pointer.r | 57 ++++++-------------- oosp-0.2.2/oosp/inst/doc/Makefile |only oosp-0.2.2/oosp/inst/doc/maia.sty |only oosp-0.2.2/oosp/inst/doc/oosp1.pdf |only oosp-0.2.2/oosp/inst/doc/oosp1.rnw |only oosp-0.2.2/oosp/inst/doc/oosp2.pdf |only oosp-0.2.2/oosp/inst/doc/oosp2.rnw |only oosp-0.2.2/oosp/inst/doc/oosp3.pdf |only oosp-0.2.2/oosp/inst/doc/oosp3.rnw |only oosp-0.2.2/oosp/man/as.r.default.Rd |only oosp-0.2.2/oosp/man/clone.compenv.Rd | 9 +-- oosp-0.2.2/oosp/man/collection.Rd |only oosp-0.2.2/oosp/man/compenv.Rd | 26 +++++---- oosp-0.2.2/oosp/man/component.Rd | 10 +-- oosp-0.2.2/oosp/man/datafile.Rd |only oosp-0.2.2/oosp/man/extend.Rd | 4 - oosp-0.2.2/oosp/man/freemethod.Rd |only oosp-0.2.2/oosp/man/function.Rd | 11 +--- oosp-0.2.2/oosp/man/is.cleancall.Rd |only oosp-0.2.2/oosp/man/list.to.compenv.Rd |only oosp-0.2.2/oosp/man/masks.Rd |only oosp-0.2.2/oosp/man/misc.Rd |only oosp-0.2.2/oosp/man/mobject.Rd |only oosp-0.2.2/oosp/man/newgenerics.Rd | 30 +++++----- oosp-0.2.2/oosp/man/object.Rd | 10 +-- oosp-0.2.2/oosp/man/pointer.Rd | 24 ++++---- oosp-0.2.2/oosp/man/preview.Rd |only oosp-0.2.2/oosp/man/print.compenv.Rd |only oosp-0.2.2/oosp/man/trim.Rd |only 49 files changed, 186 insertions(+), 191 deletions(-)
Author: Vito M. R. Muggeo
Title: Modelling temperature effects using time series data
Description: Fits a Constrained Segmented Distributed Lag regression
model to epidemiological time series of mortality, temperature,
and other confounders.
Diff between modTempEff versions 1.1 dated 2009-09-20 and 1.3 dated 2009-11-22
modTempEff-1.1/modTempEff/R/p.control.R |only modTempEff-1.1/modTempEff/R/temp.control.R |only modTempEff-1.1/modTempEff/man/p.control.Rd |only modTempEff-1.1/modTempEff/man/temp.control.Rd |only modTempEff-1.3/modTempEff/DESCRIPTION | 8 modTempEff-1.3/modTempEff/NAMESPACE | 8 modTempEff-1.3/modTempEff/R/anova.modTempEff.R |only modTempEff-1.3/modTempEff/R/coef.modTempEff.r |only modTempEff-1.3/modTempEff/R/csdl.R |only modTempEff-1.3/modTempEff/R/plot.modTempEff.R | 15 + modTempEff-1.3/modTempEff/R/print.modTempEff.R | 7 modTempEff-1.3/modTempEff/R/seas.R |only modTempEff-1.3/modTempEff/R/summary.modTempEff.R | 54 ++-- modTempEff-1.3/modTempEff/R/tempeff.R | 249 +++++++++++--------- modTempEff-1.3/modTempEff/R/tempeff.fit.R | 17 - modTempEff-1.3/modTempEff/man/anova.modTempEff.Rd |only modTempEff-1.3/modTempEff/man/coef.modTempEff.Rd |only modTempEff-1.3/modTempEff/man/csdl.Rd |only modTempEff-1.3/modTempEff/man/fit.control.Rd | 4 modTempEff-1.3/modTempEff/man/modTempEff-package.Rd | 24 + modTempEff-1.3/modTempEff/man/plot.modTempEff.Rd | 31 +- modTempEff-1.3/modTempEff/man/seas.Rd |only modTempEff-1.3/modTempEff/man/summary.modTempEff.Rd | 14 - modTempEff-1.3/modTempEff/man/tempeff.Rd | 78 ++++-- modTempEff-1.3/modTempEff/man/tempeff.fit.Rd | 8 25 files changed, 310 insertions(+), 207 deletions(-)
Author: Pavel N. Krivitsky
Diff between latentnet versions 2.2-2 dated 2009-10-28 and 2.2-3 dated 2009-11-22
Title: Latent position and cluster models for statistical networks
Description: A package to fit and simulate latent position and cluster
models for statistical networks.
ChangeLog | 3 ++
DESCRIPTION | 8 +++----
R/ergmm.probs.R | 2 -
man/families.ergmm.Rd | 12 +++++-----
man/gof.ergmm.Rd | 3 +-
man/mcmc.diagnostics.ergmm.Rd | 3 +-
man/plot.ergmm.Rd | 48 ++++++++++++++++++++----------------------
man/simulate.ergmm.Rd | 3 +-
man/summary.ergmm.Rd | 3 +-
tests/missing.R |only
10 files changed, 45 insertions(+), 40 deletions(-)
Author: Gabor Csardi
Diff between igraph versions 0.5.2-2 dated 2009-05-08 and 0.5.3 dated 2009-11-22
Title: Network analysis and visualization
Description: Routines for simple graphs and network analysis. igraph
can handle large graphs very well and provides functions for
generating random and regular graphs, graph visualization,
centrality indices and much more.
DESCRIPTION | 12
R/conversion.R | 15
R/socnet.R | 45
R/structural.properties.R | 43
R/structure.generators.R | 20
configure | 3109 ++++++++++++++++++++++----------------
man/aaa-igraph-package.Rd | 2
man/community.edge.betweenness.Rd | 2
man/constraint.Rd | 3
man/diameter.Rd | 20
man/graph.data.frame.Rd | 10
man/graph.laplacian.Rd | 3
man/graphNEL.Rd | 4
man/leading.eigenvector.Rd | 2
man/plot.common.Rd | 10
man/preference.game.Rd | 2
man/read.graph.Rd | 11
src/Makevars | 2
src/Makevars.win | 2
src/attributes.h | 4
src/bipartite.c | 2
src/bliss.cc | 4
src/bliss_bignum.hh | 8
src/bliss_defs.hh | 8
src/bliss_eqrefhash.cc | 4
src/bliss_eqrefhash.hh | 8
src/bliss_graph.cc | 4
src/bliss_graph.hh | 8
src/bliss_heap.cc | 4
src/bliss_heap.hh | 8
src/bliss_kqueue.hh | 8
src/bliss_kstack.hh | 8
src/bliss_orbit.cc | 4
src/bliss_orbit.hh | 8
src/bliss_partition.cc | 4
src/bliss_partition.hh | 8
src/bliss_timer.cc | 4
src/bliss_timer.hh | 8
src/bliss_utils.cc | 4
src/bliss_utils.hh | 8
src/centrality.c | 12
src/dqueue.pmt | 2
src/fast_community.c | 5
src/flow.c | 3
src/igraph.h | 8
src/pottsmodel_2.cpp | 9
src/rinterface.c | 32
src/structural_properties.c | 161 +
src/vector.pmt | 6
src/vector_ptr.c | 18
src/walktrap.cpp | 6
src/walktrap_communities.cpp | 6
src/walktrap_communities.h | 6
src/walktrap_graph.cpp | 30
src/walktrap_graph.h | 5
src/walktrap_heap.cpp | 6
src/walktrap_heap.h | 6
57 files changed, 2410 insertions(+), 1354 deletions(-)
Author: Ulrike Groemping
Title: Inequality constrained inference in linear normal situations
Description: This package implements parameter estimation in normal
(linear) models under linear equality and inequality
constraints and implements normal likelihood ratio tests
involving inequality-constrained hypotheses. For
inequality-constrained linear models, averaging over R-squared
for different orderings of regressors is also included.
Diff between ic.infer versions 1.0-6 dated 2008-09-21 and 1.1 dated 2009-11-22
ic.infer-1.0-6/ic.infer/inst/doc |only ic.infer-1.1/ic.infer/DESCRIPTION | 33 +++++++++++++++--------- ic.infer-1.1/ic.infer/NAMESPACE | 5 ++- ic.infer-1.1/ic.infer/R/aaa.R |only ic.infer-1.1/ic.infer/R/contr.diff.R |only ic.infer-1.1/ic.infer/R/make.mon.ui.R |only ic.infer-1.1/ic.infer/data |only ic.infer-1.1/ic.infer/inst/NEWS |only ic.infer-1.1/ic.infer/man/bodyfat.Rd |only ic.infer-1.1/ic.infer/man/contr.diff.Rd |only ic.infer-1.1/ic.infer/man/grades.Rd |only ic.infer-1.1/ic.infer/man/ic.est.Rd | 7 +++-- ic.infer-1.1/ic.infer/man/ic.infer-package.rd | 19 ++++++++++++- ic.infer-1.1/ic.infer/man/ic.test.rd | 2 - ic.infer-1.1/ic.infer/man/ic.weights.rd | 2 - ic.infer-1.1/ic.infer/man/internal.functions.rd | 2 - ic.infer-1.1/ic.infer/man/make.mon.ui.rd |only ic.infer-1.1/ic.infer/man/or.relimp.rd | 2 - ic.infer-1.1/ic.infer/man/orlm.rd | 9 ++++-- 19 files changed, 56 insertions(+), 25 deletions(-)
Author: Jing Hua Zhao and colleagues with inputs from Kurt Hornik and
Brian Ripley
Title: Genetic analysis package
Description: It is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it
contains functions for sample size calculations of both
population-based and family-based designs, classic twin models,
probability of familial disease aggregation, kinship
calculation, some statistics in linkage analysis, and
association analysis involving one or more genetic markers
including haplotype analysis with or without environmental
covariates.
Diff between gap versions 1.0-20 dated 2009-08-26 and 1.0-21 dated 2009-11-22
ChangeLog | 10 +++++++- DESCRIPTION | 8 +++--- NAMESPACE | 4 +-- R/abc.R |only R/mhtplot.R | 34 ++++++++++++++--------------- R/qqunif.R | 58 +++++++++++++++++++++++++++++++++++++++++++------- R/read.ms.output.R |only inst/doc/gap.pdf |binary inst/doc/ms |only man/abc.Rd |only man/gap-package.Rd | 4 ++- man/mhtplot.Rd | 8 ++++++ man/pbsize2.Rd | 4 +-- man/qqfun.Rd | 3 -- man/qqunif.Rd | 19 ++++++++++++---- man/read.ms.output.Rd |only 16 files changed, 109 insertions(+), 43 deletions(-)
Author: Mikis Stasinopoulos
Diff between gamlss.tr versions 3.0-1 dated 2009-10-14 and 3.1-0 dated 2009-11-22
Title: Generating and fitting truncated (gamlss.family) distributions
Description: This is an add on package to GAMLSS. The purpose of this
package is to allow users to defined truncated distributions in
GAMLSS models. The main function gen.trun() generates truncated
version of an existing GAMLSS family distribution.
DESCRIPTION | 8 ++++----
R/trun.d.R | 30 +++++++++++++++---------------
man/trun.d.Rd | 22 +++++++++++-----------
3 files changed, 30 insertions(+), 30 deletions(-)
Author: Mikis Stasinopoulos
Diff between gamlss.nl versions 3.0-1 dated 2009-10-14 and 3.1-0 dated 2009-11-22
Title: Fitting non linear parametric GAMLSS models
Description: This is an add on package to GAMLSS. It allows one extra
method for fitting GAMLSS models. The main function nlgamlss()
can fit any parametric (up to four parameter) GAMLSS
distribution.
DESCRIPTION | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
Author: Mikis Stasinopoulos
Diff between gamlss.mx versions 3.0-1 dated 2009-10-14 and 3.1-0 dated 2009-11-22
Title: A GAMLSS add on package for fitting mixture distributions
Description: The main purpose of this package is to allow fitting of
mixture distributions with GAMLSS models.
DESCRIPTION | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
Author: Mikis Stasinopoulos
Diff between gamlss.dist versions 3.0-1 dated 2009-10-14 and 3.1-0 dated 2009-11-22
Title: Distributions to be used for GAMLSS modelling.
Description: This package contains the distributions for GAMLSS
modelling.
DESCRIPTION | 8 ++++----
man/GB1.Rd | 6 +++---
man/GB2.Rd | 4 +++-
3 files changed, 10 insertions(+), 8 deletions(-)
Author: Mikis Stasinopoulos
Diff between gamlss.data versions 3.0-1 dated 2009-10-14 and 3.1-0 dated 2009-11-22
Title: GAMLSS Data.
Description: Data for GAMLSS models.
DESCRIPTION | 8 ++++----
data/acidity.r |only
data/dbbmi.r |only
data/tse.r |only
data/vas5.r |only
man/dbbmi.Rd |only
man/tse.Rd |only
man/vas5.Rd |only
8 files changed, 4 insertions(+), 4 deletions(-)
Author: Mikis Stasinopoulos
Diff between gamlss.cens versions 3.0.1 dated 2009-10-14 and 3.1.0 dated 2009-11-22
Title: Fitting an interval response variable using gamlss.family
distributions
Description: This is an add on package to GAMLSS. The purpose of this
package is to allow users to fit interval response variables in
GAMLSS models. The main function gen.cens() generates a
censored version of an existing GAMLSS family distribution.
DESCRIPTION | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
Author: Mikis Stasinopoulos
Diff between gamlss versions 3.0-1 dated 2009-10-14 and 3.1-0 dated 2009-11-22
Title: Generalized Additive Models for Location Scale and Shape.
Description: The library for fitting GAMLSS models.
DESCRIPTION | 8 ++++----
NAMESPACE | 3 ++-
R/cy.R | 2 +-
R/edf.R |only
R/pb.R | 2 +-
inst/doc/NEWS.txt | 19 +++++++++++++++++++
man/edf.Rd |only
7 files changed, 27 insertions(+), 7 deletions(-)
Author: Søren Højsgaard
Diff between gRain versions 0.8.1 dated 2009-08-01 and 0.8.2 dated 2009-11-22
Title: Graphical Independence Networks
Description: A package for probability propagation in graphical
independence networks, also known as probabilistic expert
systems (which includes Bayesian networks as a special case).
gRain-0.8.1/gRain/R/asxxx.R |only
gRain-0.8.1/gRain/R/compile-grain2.R |only
gRain-0.8.1/gRain/R/grain-main2.R |only
gRain-0.8.2/gRain/ChangeLog | 6 ++
gRain-0.8.2/gRain/DESCRIPTION | 6 +-
gRain-0.8.2/gRain/R/Finding.R | 60 ++++++++------------
gRain-0.8.2/gRain/R/SimulateArray.R | 8 +-
gRain-0.8.2/gRain/R/compile-grain.R |only
gRain-0.8.2/gRain/R/compileCPT.R | 34 ++++-------
gRain-0.8.2/gRain/R/cptable.R | 85 +++--------------------------
gRain-0.8.2/gRain/R/display.R | 2
gRain-0.8.2/gRain/R/extractCPT.R | 19 ++++--
gRain-0.8.2/gRain/R/grain-main.R |only
gRain-0.8.2/gRain/R/infoPrint.R |only
gRain-0.8.2/gRain/R/loadSaveHuginNet.R | 33 ++++++-----
gRain-0.8.2/gRain/R/methods.R | 14 ++--
gRain-0.8.2/gRain/R/potentialList.R | 28 ++-------
gRain-0.8.2/gRain/R/propagate.R | 52 ++++-------------
gRain-0.8.2/gRain/R/querygrain.R | 6 +-
gRain-0.8.2/gRain/R/summary.R | 22 ++-----
gRain-0.8.2/gRain/inst/doc/gRain-intro.pdf |binary
gRain-0.8.2/gRain/man/compile.grain.Rd | 4 -
gRain-0.8.2/gRain/man/compileCPT.Rd | 8 +-
gRain-0.8.2/gRain/man/extractCPT.Rd | 4 -
gRain-0.8.2/gRain/man/grain.Rd | 22 +++----
gRain-0.8.2/gRain/man/internal-gRain.Rd | 4 -
gRain-0.8.2/gRain/man/loadSaveHuginNet.Rd | 10 +--
gRain-0.8.2/gRain/man/propagate.grain.Rd | 4 -
gRain-0.8.2/gRain/man/querygrain.Rd | 3 -
gRain-0.8.2/gRain/man/simulate.Rd | 2
30 files changed, 163 insertions(+), 273 deletions(-)
Author: Joseph Richards
Diff between diffusionMap versions 0.0-2 dated 2009-05-10 and 1.0-0 dated 2009-11-22
Title: Diffusion map
Description: Implements diffusion map method of data parametrization,
including creation and visualization of diffusion map,
clustering with diffusion K-means and regression using adaptive
regression model.
DESCRIPTION | 22 +++++++++++-----------
NAMESPACE | 2 +-
R/adapreg.R |only
R/adapreg.m.R |only
R/diffuse.R | 46 ++++++++++++++++++++++++++++++----------------
R/diffusionKmeans.R | 2 +-
R/epsilonCompute.R | 3 ++-
R/nystrom.R |only
man/adapreg.Rd |only
man/adapreg.m.Rd |only
man/diffuse.Rd | 34 ++++++++++++++++++++++++----------
man/diffusionKmeans.Rd | 32 +++++++++++++++++++++++---------
man/distortionMin.Rd | 1 +
man/epsilonCompute.Rd | 6 +++---
man/nystrom.Rd |only
15 files changed, 96 insertions(+), 52 deletions(-)
Author: Venkatraman E. Seshan
Title: Clinical Trial Design and Data Analysis Functions
Description: Utilities to make your clinical collaborations easier if
not fun.
Diff between clinfun versions 0.8.6 dated 2009-11-19 and 0.8.7 dated 2009-11-22
CHANGES | 4 ++++ DESCRIPTION | 6 +++--- R/pselect.R | 6 ++++-- 3 files changed, 11 insertions(+), 5 deletions(-)
Author: Ulrike Groemping
Title: R Commander Plugin for (industrial) Design of Experiments
Description: WARNING: This package is currently in beta status! The
package provides a platform-independent GUI for design of
experiments. It is implemented as a plugin to the R-Commander,
which is a more general graphical user interface for statistics
in R based on tcl/tk. DoE functionality can be accessed through
the menu Design that is added to the R-Commander menus.
Diff between RcmdrPlugin.DoE versions 0.6-6 dated 2009-10-26 and 0.6-7 dated 2009-11-22
DESCRIPTION | 8 ++++---- R/Menu.FrF2level.R | 2 +- R/Menu.bbd.r | 2 +- R/Menu.ccd.r | 2 +- R/Menu.fac.R | 2 +- R/Menu.lhs.R | 2 +- R/Menu.oa.R | 2 +- R/Menu.pb2level.R | 2 +- inst/NEWS | 6 ++++++ man/Menu.FrF2levelTabEstimable.Rd | 17 +++++++++++++++-- 10 files changed, 32 insertions(+), 13 deletions(-)
More information about RcmdrPlugin.DoE at CRAN
Permanent link
Author: Douglas Bates
Diff between Matrix versions 0.999375-31 dated 2009-10-08 and 0.999375-32 dated 2009-11-22
Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
ChangeLog | 97 +
DESCRIPTION | 10
Done | 12
NAMESPACE | 1
R/AllClass.R | 51
R/Auxiliaries.R | 87 -
R/Csparse.R | 10
R/Ops.R | 191 +-
R/Tsparse.R | 43
R/abIndex.R |only
R/ddenseMatrix.R | 2
R/dgCMatrix.R | 8
R/diagMatrix.R | 16
R/dspMatrix.R | 8
R/dsparseMatrix.R | 2
R/dsyMatrix.R | 14
R/dtpMatrix.R | 24
R/lsparseMatrix.R | 17
R/not.R | 6
R/products.R | 104 +
R/sparseMatrix.R | 65
R/sparseVector.R | 92 -
TODO | 18
data/CAex.R | 2
data/KNex.R | 2
data/USCounties.R | 2
inst/doc/Comparisons.pdf |binary
inst/doc/Design-issues.pdf |binary
inst/doc/Intro2Matrix.pdf | 3707 ++++++++++++++++++++++++++-------------------
inst/doc/Introduction.pdf |binary
inst/doc/sparseModels.pdf |binary
inst/test-tools.R | 59
man/Matrix-class.Rd | 2
man/TsparseMatrix-class.Rd | 3
man/abIndex-class.Rd |only
man/dMatrix-class.Rd | 8
man/dgCMatrix-class.Rd | 2
man/lu.Rd | 16
man/nMatrix-class.Rd | 1
man/printSpMatrix.Rd | 4
man/rleDiff-class.Rd |only
man/sparseVector-class.Rd | 36
src/Csparse.c | 18
src/Mutils.c | 1
src/abIndex.c |only
src/abIndex.h |only
src/chm_common.c | 116 -
src/dgCMatrix.c | 21
src/dgCMatrix.h | 2
src/dgeMatrix.c | 17
src/init.c | 8
src/scripts/SOURCES_C.mkf | 3
tests/Simple.R | 59
tests/abIndex-tsts.R |only
tests/bind.Rout.save | 19
tests/group-methods.R | 12
tests/indexing.R | 12
tests/indexing.Rout.save | 80
tests/matprod.R | 15
tests/other-pkgs.R | 10
60 files changed, 3148 insertions(+), 1967 deletions(-)
Author: Michael Friendly, with contributions by Stephane Dray, Hadley
Wickham
Title: Data sets from the history of statistics and data visualization
Description: The HistData package provides a collection of small data
sets that are interesting and important in the history of
statistics and data visualization. The goal of the package is
to make these available, both for instructional use and for
historical research. Some of these present interesting
challenges for graphics or analysis in R.
Diff between HistData versions 0.6-4 dated 2009-11-13 and 0.6-5 dated 2009-11-22
DESCRIPTION | 10 +++++----- data/Dactyl.RData |only data/Fingerprints.RData |only data/Pyx.RData |only inst/ChangeLog | 10 ++++++++++ man/Arbuthnot.Rd | 6 ++++-- man/Dactyl.Rd |only man/DrinksWages.Rd | 5 +++-- man/Fingerprints.Rd |only man/HistData-package.Rd | 4 ++-- man/Jevons.Rd | 22 ++++++++++++++++++++++ man/Nightingale.Rd | 4 ++-- man/Pyx.Rd |only 13 files changed, 48 insertions(+), 13 deletions(-)
Author: Bendix Carstensen, Martyn Plummer, Esa Laara, Michael Hills et.
al.
Title: A package for statistical analysis in epidemiology.
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data,
including interval censored data and representation of
multistate data. Also some useful functions for tabulation and
plotting. Contains some epidemiological datasets.
Diff between Epi versions 1.1.7 dated 2009-09-30 and 1.1.9 dated 2009-11-22
CHANGES | 14 ++ DESCRIPTION | 10 - NAMESPACE | 3 R/apc.fit.R | 27 ++-- R/lexis.R | 37 ++++-- data/occup.R |only inst/doc/Follow-up.pdf | 270 ++++++++++++++++++++++++------------------------- inst/doc/Rplots.pdf | 30 ++--- man/occup.Rd |only man/plot.Lexis.Rd | 28 ++++- 10 files changed, 238 insertions(+), 181 deletions(-)