Author: Hsin-ya Lee
Diff between stab versions 0.0.5 dated 2008-11-04 and 0.0.6 dated 2009-11-24
Title: data analysis of drug stability
Description: A menu-driven package for data analysis of drug stability
based on ICH guideline(such as estimation of shelf-life from a
3-batch profile.)
DESCRIPTION | 27 ++++++++++++++++-----------
R/MultipleAnalyze.r | 4 ++--
R/stabilitymenu.r | 2 +-
R/zzz.R | 2 +-
man/MultipleAnalyze.rd | 2 +-
5 files changed, 21 insertions(+), 16 deletions(-)
Author: Graham Williams
Diff between rattle versions 2.5.3 dated 2009-11-06 and 2.5.6 dated 2009-11-24
Title: A graphical user interface for data mining in R using GTK
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab
and so available to the user as a script file or as an aide to
the user to interact directly with R itself. Rattle also
exports a number of utility functions and the graphical user
interface, invoked as rattle(), does not need to be run to
deploy these.
DESCRIPTION | 8
R/cluster.R | 18 -
R/data.R | 48 ++--
R/evaluate.R | 472 ++++++++++++++++++++++-------------------
R/explore.R | 8
R/export.R | 12 -
R/model.R | 135 +----------
R/nnet.R | 94 +-------
R/projects.R | 6
R/rattle.R | 114 +++++----
R/rpart.R | 4
R/survival.R | 113 +++++----
R/zzz.R | 8
data/weather.RData |binary
data/weatherCanberra.RData |binary
data/weatherSydney.RData |binary
inst/arff/weather.arff | 2
inst/arff/weatherCanberra.arff | 10
inst/arff/weatherSydney.arff | 8
inst/csv/weatherCanberra.csv | 8
inst/csv/weatherSydney.csv | 6
inst/etc/rattle.glade | 440 ++++++++++++--------------------------
man/internal.Rd | 22 +
23 files changed, 660 insertions(+), 876 deletions(-)
Author: Matthew Denwood
Diff between bayescount versions 0.9.0-7 dated 2009-01-08 and 0.9.9-1 dated 2009-11-24
Title: Power calculations and Bayesian analysis of count distributions
and FECRT data using MCMC
Description: A set of functions to allow analysis of count data (such
as faecal egg count data) using Bayesian MCMC methods. Returns
information on the possible values for mean count, coefficient
of variation and zero inflation (true prevalence) present in
the data. A complete faecal egg count reduction test (FECRT)
model is implemented, which returns inference on the true
efficacy of the drug from the pre and post treatment data
provided, using non-parametric bootstrapping as well as using
Bayesian MCMC. Functions to perform power analyses for faecal
egg counts (including FECRT) are also provided. Requires Just
Another Gibbs Sampler (JAGS) for most functions (except power
analysis calculations), see:
http://www-fis.iarc.fr/~martyn/software/jags/.
DESCRIPTION | 30 ++-
NAMESPACE | 4
R/bayescount.R | 11 -
R/bayescount.single.R | 40 +++-
R/fec.power.R |only
R/fecrt.R | 433 ++++++++++++++++++++++++----------------------
R/fecrt.power.R |only
R/invisible.R | 104 +++++++++--
R/maximise.likelihood.R | 29 ++-
R/run.model.R | 12 -
R/zzz.R |only
inst/CITATION | 20 +-
inst/version_history.txt | 29 ++-
man/bayescount.Rd | 6
man/bayescount.single.Rd | 2
man/fec.power.Rd |only
man/fec.power.limits.Rd |only
man/fecrt.Rd | 40 ++--
man/fecrt.power.Rd |only
man/fecrt.power.limits.Rd |only
man/run.model.Rd | 4
src |only
22 files changed, 476 insertions(+), 288 deletions(-)
Author: Enrico Glaab
Title: Generate 3D visualizations for data exploration on the web
Description: vrmlgen creates 3D scatter and bar plots, visualizations
of 3D meshes, parametric functions and height maps in
web-formats like the Virtual Reality Markup Language (VRML,
filetype .wrl) and the LiveGraphics3D format.
Diff between vrmlgen versions 1.2 dated 2009-11-12 and 1.3 dated 2009-11-24
DESCRIPTION | 6 - R/lbar.R | 68 ++++++++++++- R/lcloud.R | 133 +++++++++++++++++++++++--- R/lmesh.R | 92 +++++++++++++++--- R/vbar.R | 177 +++++++++++++++++++++++------------ R/vcloud.R | 255 +++++++++++++++++++++++++++------------------------ R/vmesh.R | 138 ++++++++++++++++++++++----- R/vrmlgen-internal.R | 29 +++++ man/lcloud.Rd | 13 +- man/lmesh.Rd | 10 +- man/vbar.Rd | 2 man/vcloud.Rd | 8 + man/vmesh.Rd | 14 ++ 13 files changed, 682 insertions(+), 263 deletions(-)
Author: Florian Jansen
Diff between vegdata versions 0.1 dated 2009-11-11 and 0.1.1 dated 2009-11-24
Title: Functions to use vegetation databases (Turboveg) for vegetation
analyses in R
Description: Handling of vegetation data sets from Turboveg Databases.
Taxonomic valuation for German Taxonomical Standard List.
vegdata-0.1.1/vegdata/DESCRIPTION | 6
vegdata-0.1.1/vegdata/R/freqtab.r | 21
vegdata-0.1.1/vegdata/R/tv.coverperc.r | 4
vegdata-0.1.1/vegdata/R/tv.home.r | 3
vegdata-0.1.1/vegdata/R/tv.metainfo.r |only
vegdata-0.1.1/vegdata/R/tv.site.r | 4
vegdata-0.1.1/vegdata/R/tv.taxval.r | 114
vegdata-0.1.1/vegdata/R/tv.veg.r | 2
vegdata-0.1.1/vegdata/inst/CITATION | 4
vegdata-0.1.1/vegdata/inst/ChangeLog | 3
vegdata-0.1.1/vegdata/inst/doc/vegdata.bib | 43
vegdata-0.1.1/vegdata/inst/doc/vegdata.pdf |26955 +++++-----
vegdata-0.1.1/vegdata/inst/doc/vegdata.rnw | 168
vegdata-0.1.1/vegdata/inst/extdata/Data/elbaue/metainfo.txt | 21
vegdata-0.1.1/vegdata/inst/extdata/Data/taxatest/metainfo.txt | 24
vegdata-0.1.1/vegdata/inst/extdata/Data/taxatest/tvabund.dbf |binary
vegdata-0.1.1/vegdata/man/freqtab.rd | 3
vegdata-0.1.1/vegdata/man/tv.metainfo.rd |only
vegdata-0.1.1/vegdata/man/tv.obs.rd | 10
vegdata-0.1.1/vegdata/man/tv.site.rd | 2
vegdata-0.1.1/vegdata/man/tv.taxval.rd | 41
vegdata-0.1.1/vegdata/man/tv.veg.rd | 2
vegdata-0.1/vegdata/R/metainfo.r |only
vegdata-0.1/vegdata/man/metainfo.rd |only
24 files changed, 13766 insertions(+), 13664 deletions(-)
Author: Albart Coster
Title: Pedigree functions
Description: Pedigree related functions
Diff between pedigree versions 1.1 dated 2009-02-24 and 1.2 dated 2009-11-24
pedigree-1.1/pedigree/Read-and-delete-me |only pedigree-1.2/pedigree/DESCRIPTION | 10 +- pedigree-1.2/pedigree/NAMESPACE | 2 pedigree-1.2/pedigree/R/add.Inds.R | 5 - pedigree-1.2/pedigree/R/drivers.r | 26 ++++- pedigree-1.2/pedigree/man/countOff.Rd |only pedigree-1.2/pedigree/man/trimPed.Rd | 7 + pedigree-1.2/pedigree/src/Pedigree.cpp | 145 ++++++++++++++++++++++++------- pedigree-1.2/pedigree/src/Pedigree.h | 11 +- 9 files changed, 160 insertions(+), 46 deletions(-)
Author: Randy Bui, Ron N. Buliung, Tarmo K. Remmel
Title: A collection of functions for estimating centrographic statistcs
and computational geometries for spatial point patterns
Description: A collection of functions for computing centrographic
statistics (e.g., standard distance, standard deviation
ellipse, standard deviation box), and minimum convex polygons
(MCP) for observations taken at point locations. A tool is
also provided for converting geometric objects associated with
the centrographic statistics, and MCPs into ESRI Shapefiles.
Separate plotting functions have been developed for each
measure.
Diff between aspace versions 1.2 dated 2007-05-08 and 2.2 dated 2009-11-24
DESCRIPTION | 27 ++-- NAMESPACE | 2 R/calc_box.R |only R/calc_mcp.R | 72 ++++------ R/calc_sdd.R | 258 ++++++++++++++++++++------------------ R/calc_sde.R | 336 ++++++++++++++++++++++++++------------------------ R/distances.R | 4 R/ellipse3.R | 7 - R/plot_box.R |only R/plot_mcp.R |only R/plot_sdd.R |only R/plot_sde.R |only data/r.BOX.rda |only data/r.MCP.rda |only data/r.SDD.rda |only data/r.SDE.rda |only man/activities.Rd | 6 man/aspace.package.Rd | 16 +- man/calc_box.Rd |only man/calc_mcp.Rd | 29 +--- man/calc_sdd.Rd | 57 ++++---- man/calc_sde.Rd | 68 ++++------ man/ellipse3.Rd | 2 man/plot_box.Rd |only man/plot_mcp.Rd |only man/plot_sdd.Rd |only man/plot_sde.Rd |only man/r.BOX.Rd |only man/r.MCP.Rd |only man/r.SDD.Rd |only man/r.SDE.Rd |only man/wts.Rd | 2 32 files changed, 458 insertions(+), 428 deletions(-)
Author: Albart Coster, John Bastiaansen
Title: HaploSim
Description: Simulate haplotypes through meioses. Allows specification
of population parameters.
Diff between HaploSim versions 1.8 dated 2009-04-14 and 1.8.1 dated 2009-11-24
DESCRIPTION | 10 +++++----- R/SamplePedigree.R | 2 +- R/getAll.R | 33 +++++++++++++++++++++++++++++++++ 3 files changed, 39 insertions(+), 6 deletions(-)
Author: Markus Gesmann
Title: Mack-, Bootstrap and Munich-chain-ladder methods for insurance
claims reserving
Description: The package provides Mack-, Munich-, and Bootstrap
chain-ladder methods. These methods are typically used in
insurance claims reserving.
Diff between ChainLadder versions 0.1.2-11 dated 2009-03-28 and 0.1.2-13 dated 2009-11-24
ChainLadder-0.1.2-11/ChainLadder/data/M3IR5.Rdata |only ChainLadder-0.1.2-13/ChainLadder/DESCRIPTION | 14 ChainLadder-0.1.2-13/ChainLadder/NAMESPACE | 10 ChainLadder-0.1.2-13/ChainLadder/NEWS | 65 +- ChainLadder-0.1.2-13/ChainLadder/R/ChainLadder.R | 50 + ChainLadder-0.1.2-13/ChainLadder/R/MackChainLadderFunctions.R | 318 +++++++--- ChainLadder-0.1.2-13/ChainLadder/R/MunichChainLadderFunctions.R | 34 - ChainLadder-0.1.2-13/ChainLadder/R/Triangles.R |only ChainLadder-0.1.2-13/ChainLadder/THANKS | 6 ChainLadder-0.1.2-13/ChainLadder/data/ABC.RData |binary ChainLadder-0.1.2-13/ChainLadder/data/GenIns.RData |binary ChainLadder-0.1.2-13/ChainLadder/data/GenInsLong.RData |only ChainLadder-0.1.2-13/ChainLadder/data/M3IR5.RData |only ChainLadder-0.1.2-13/ChainLadder/data/MCLincurred.RData |binary ChainLadder-0.1.2-13/ChainLadder/data/MCLpaid.RData |binary ChainLadder-0.1.2-13/ChainLadder/data/Mortgage.RData |binary ChainLadder-0.1.2-13/ChainLadder/data/RAA.RData |binary ChainLadder-0.1.2-13/ChainLadder/data/qincurred.RData |binary ChainLadder-0.1.2-13/ChainLadder/data/qpaid.RData |binary ChainLadder-0.1.2-13/ChainLadder/inst/Experimental/doc |only ChainLadder-0.1.2-13/ChainLadder/inst/Images/MackLattice.png |only ChainLadder-0.1.2-13/ChainLadder/man/ABC.Rd | 3 ChainLadder-0.1.2-13/ChainLadder/man/BootChainLadder.Rd | 19 ChainLadder-0.1.2-13/ChainLadder/man/ChainLadder-package.Rd | 83 ++ ChainLadder-0.1.2-13/ChainLadder/man/GenIns.Rd | 21 ChainLadder-0.1.2-13/ChainLadder/man/M3IR5.Rd |only ChainLadder-0.1.2-13/ChainLadder/man/MCLpaid.Rd | 4 ChainLadder-0.1.2-13/ChainLadder/man/MackChainLadder.Rd | 170 +++-- ChainLadder-0.1.2-13/ChainLadder/man/Mortgage.Rd | 3 ChainLadder-0.1.2-13/ChainLadder/man/MunichChainLadder.Rd | 56 + ChainLadder-0.1.2-13/ChainLadder/man/RAA.Rd | 3 ChainLadder-0.1.2-13/ChainLadder/man/Triangles.Rd |only ChainLadder-0.1.2-13/ChainLadder/man/chainladder.Rd |only ChainLadder-0.1.2-13/ChainLadder/man/plot.BootChainLadder.Rd | 18 ChainLadder-0.1.2-13/ChainLadder/man/plot.MackChainLadder.Rd | 25 ChainLadder-0.1.2-13/ChainLadder/man/plot.MunichChainLadder.Rd | 15 ChainLadder-0.1.2-13/ChainLadder/man/predict.TriangleModel.Rd | 47 - ChainLadder-0.1.2-13/ChainLadder/man/qpaid.rd | 2 ChainLadder-0.1.2-13/ChainLadder/man/residuals.MackChainLadder.Rd | 2 ChainLadder-0.1.2-13/ChainLadder/man/summary.BootChainLadder.Rd | 2 ChainLadder-0.1.2-13/ChainLadder/man/summary.MackChainLadder.Rd | 8 ChainLadder-0.1.2-13/ChainLadder/man/summary.MunichChainLadder.Rd | 2 ChainLadder-0.1.2-13/ChainLadder/man/utilityfunctions.Rd |only 43 files changed, 695 insertions(+), 285 deletions(-)