Author: Brian Walters
Diff between nnDiag versions 0.0-3 dated 2009-11-17 and 0.0-4 dated 2009-11-25
Title: k-Nearest Neighbor Diagnostic Tools
Description: A suite of graphical diagnostic tools to evaluate kNN
classifications.
DESCRIPTION | 14 +++++++-------
NAMESPACE | 4 ++--
R/knnvarfun.R |only
man/LuceForgrp.Rd | 7 ++++++-
man/LuceVolume.Rd | 7 ++++++-
man/LuceVolume_subset.Rd | 7 ++++++-
man/aoiMaker.Rd | 4 ++--
man/arealBias.Rd | 4 ++--
man/bias.Rd | 2 +-
man/categorical.Rd | 2 +-
man/extrap.Rd | 5 +++--
man/grouper.Rd | 2 +-
man/knnvarfun.Rd |only
man/nnDiag-package.Rd | 11 ++++++++---
man/outInflu.Rd | 2 +-
man/rmse.Rd | 2 +-
man/scedast.Rd | 2 +-
src |only
18 files changed, 48 insertions(+), 27 deletions(-)
Author: K. Burkett
Diff between hapassoc versions 1.2-2 dated 2008-10-14 and 1.2-3 dated 2009-11-25
Title: Inference of trait associations with SNP haplotypes and other
attributes using the EM Algorithm
Description: The following R functions are used for inference of trait
associations with haplotypes and other covariates in
generalized linear models. The functions are developed
primarily for data collected in cohort or cross-sectional
studies. They can accommodate uncertain haplotype phase and
handle missing genotypes at some SNPs.
hapassoc-1.2-2/hapassoc/inst/doc/hapassoc.aux |only
hapassoc-1.2-2/hapassoc/inst/doc/hapassoc.tex |only
hapassoc-1.2-3/hapassoc/DESCRIPTION | 24
hapassoc-1.2-3/hapassoc/R/hapassoc.R | 4
hapassoc-1.2-3/hapassoc/inst/ChangeLog | 6
hapassoc-1.2-3/hapassoc/inst/doc/burkett_biblio.bib |only
hapassoc-1.2-3/hapassoc/inst/doc/hapassoc.pdf | 955 ++++++++++----------
7 files changed, 505 insertions(+), 484 deletions(-)
Author: David Ardia
Diff between bayesGARCH versions 1-00.04 dated 2009-05-11 and 1-00.05 dated 2009-11-25
Title: Bayesian Estimation of the GARCH(1,1) Model with Student-t
Innovations
Description: This package provides the bayesGARCH function which
performs the Bayesian estimation of the GARCH(1,1) model with
Student's t innovations.
DESCRIPTION | 8 ++++----
NEWS | 6 +++++-
R/onload.R | 3 +--
inst/CITATION | 18 ++++++++++++++++--
man/bayesGARCH.Rd | 29 ++++++++++++++++-------------
5 files changed, 42 insertions(+), 22 deletions(-)
Author: David Hajage
Title: Export R objects to several markup languages
Description: Coerce R object to asciidoc, txt2tags, restructuredText or
org syntax. Package comes with a set of drivers for Sweave.
Diff between ascii versions 0.3.2 dated 2009-10-28 and 0.4 dated 2009-11-25
ascii-0.3.2/ascii/R/RweaveSphinx.r |only ascii-0.3.2/ascii/man/RweaveSphinx.Rd |only ascii-0.3.2/ascii/man/Sphinx.Rd |only ascii-0.4/ascii/DESCRIPTION | 10 ascii-0.4/ascii/NAMESPACE | 3 ascii-0.4/ascii/NEWS | 11 ascii-0.4/ascii/R/RweaveAsciidoc.r | 4 ascii-0.4/ascii/R/RweaveOrg.r | 2 ascii-0.4/ascii/R/RweaveReST.r |only ascii-0.4/ascii/R/RweaveT2t.r | 2 ascii-0.4/ascii/R/SweaveAscii.r | 4 ascii-0.4/ascii/R/asciiAnova.r | 72 ++++-- ascii-0.4/ascii/R/asciiDataFrame.r | 8 ascii-0.4/ascii/R/asciiDefault.r | 4 ascii-0.4/ascii/R/asciiDensity.r | 11 ascii-0.4/ascii/R/asciiDescr.r |only ascii-0.4/ascii/R/asciiGlm.r | 22 + ascii-0.4/ascii/R/asciiHtest.r | 11 ascii-0.4/ascii/R/asciiList.r | 4 ascii-0.4/ascii/R/asciiLm.r | 22 + ascii-0.4/ascii/R/asciiMatrix.r | 13 - ascii-0.4/ascii/R/asciiPrcomp.r | 26 +- ascii-0.4/ascii/R/asciiSurvival.r | 22 + ascii-0.4/ascii/R/asciiTable.r | 11 ascii-0.4/ascii/R/asciiTs.r | 11 ascii-0.4/ascii/R/asciiVector.r | 43 ++- ascii-0.4/ascii/R/misc.r | 20 - ascii-0.4/ascii/R/print.r | 21 + ascii-0.4/ascii/R/show.r | 383 +++++++++++++++++++++++++--------- ascii-0.4/ascii/TODO | 2 ascii-0.4/ascii/man/ReST.Rd |only ascii-0.4/ascii/man/RweaveReST.Rd |only ascii-0.4/ascii/man/ascii.Rd | 76 ++++-- ascii-0.4/ascii/man/print.ascii.Rd | 13 - 34 files changed, 594 insertions(+), 237 deletions(-)
Author: Micah Altman, Jeff Gill, Michael P. McDonald
Title: Tools for testing and improving accuracy of statistical results.
Description: This is a suite of tools designed to test and improve the
accuracy of statistical computation, including: Summarization
of the sensitivity of linear and non-linear models (lm, glm,
mle, nls) to measurement and numerical error; Sensitivity
analysis of dozens of models as run through Zelig; A
generalized cholesky method for correcting non-invertable
Hessians; Tests for the global optimality of non-linear
regression and maximum likelihood results; Tools for obtaining
true random numbers using entropy collected from the system
and/or entropy servers on the internet; A method for converting
floating point numbers to normalized fractions; Benchmark data
for checking the accuracy of basic distribution functions.
Diff between accuracy versions 1.33 dated 2009-10-30 and 1.34 dated 2009-11-25
CHANGELOG | 3 DESCRIPTION | 8 inst/doc/Rplots.pdf | 1200 +++++++++++----------------------- inst/doc/accuracy_vignette-plot1a.eps | 512 ++++++++------ inst/doc/accuracy_vignette-plot1a.pdf | 597 ++++++++++------ inst/doc/accuracy_vignette-plot2a.eps | 619 +---------------- inst/doc/accuracy_vignette-plot2a.pdf | 628 +---------------- inst/doc/accuracy_vignette.aux | 28 inst/doc/accuracy_vignette.log | 48 - inst/doc/accuracy_vignette.pdf |binary inst/doc/accuracy_vignette.tex | 129 +-- man/trueRandom.Rd | 2 12 files changed, 1230 insertions(+), 2544 deletions(-)
Author: Jon T. Schnute
Diff between PBSmodelling versions 2.50.162 dated 2009-10-20 and 2.51.168 dated 2009-11-25
Title: GUI Tools Made Easy: Interact with Models, Explore Data, Give
Dynamic Presentations
Description: PBS Modelling provides software to facilitate the design,
testing, and operation of computer models. It focuses
particularly on tools that make it easy to construct and edit a
customized graphical user interface (GUI). Although it depends
heavily on the R interface to the Tcl/Tk package, a user does
not need to know Tcl/Tk. The package contains examples that
illustrate models built with other R packages, including
PBSmapping, deSolve, PBSddesolve, and BRugs. It also serves as
a convenient prototype for building new R packages, along with
instructions and batch files to facilitate that process. The R
directory '.../library/PBSmodelling/doc' includes a complete
user guide PBSmodelling-UG.pdf. To use this package
effectively, please consult the guide.
DESCRIPTION | 12 ++++----
NAMESPACE | 1
R/presentTalk.r | 5 ++-
R/supportFuns.r | 56 ++++++++++++++++++++++++++++-----------
inst/PBStools/RmakePDF.bat | 5 ++-
inst/doc/ChangeLog.txt | 6 ++++
inst/doc/PBSmodelling-UG.pdf |binary
inst/doc/PBSmodellingIntro.pdf |binary
inst/examples/runExamplesWin.txt | 2 -
inst/examples/swisstalk.xml | 2 -
man/showHelp.Rd | 24 +++++++++-------
man/viewCode.Rd | 11 ++++++-
12 files changed, 86 insertions(+), 38 deletions(-)
Author: Alan T. Arnholt
Title: PROBABILITY and STATISTICS WITH R
Description: Data and functions for the book PROBABILITY and STATISTICS
WITH R.
Diff between PASWR versions 1.0 dated 2008-02-12 and 1.1 dated 2009-11-25
DESCRIPTION | 31 +++++++++++++++++-------------- R/CIsim.R | 2 +- R/Combinations.R | 2 +- R/EDA.R | 2 +- R/SIGN.test.R | 2 +- R/SRS.R | 2 +- R/bino.gen.R | 2 +- R/checking.plots.R | 2 +- R/interval.plot.R | 2 +- R/ksLdist.R | 2 +- R/ksdist.R | 2 +- R/normarea.R | 2 +- R/nsize.R | 2 +- R/ntester.R | 2 +- R/oneway.plots.R | 2 +- R/tsum.test.R | 2 +- R/twoway.plots.R | 2 +- R/wilcoxE.test.R | 2 +- R/z.test.R | 2 +- R/zsum.test.R | 2 +- data/Aggression.rda |binary data/Apple.rda |binary data/AptSize.rda |binary data/Baberuth.rda |binary data/Bac.rda |binary data/Battery.rda |binary data/Bodyfat.rda |binary data/Calculus.rda |binary data/Cars2004EU.rda |binary data/Chips.rda |binary data/CircuitDesigns.rda |binary data/CosAma.rda |binary data/Cows.rda |binary data/Depend.rda |only data/Drosophila.rda |binary data/EPIDURAL.rda |binary data/EPIDURALf.rda |binary data/EURD.rda |binary data/Engineer.rda |binary data/FCD.rda |binary data/Fertilize.rda |binary data/Formula1.rda |binary data/GD.rda |binary data/Grades.rda |binary data/Grocery.rda |binary data/HSwrestler.rda |binary data/HardWater.rda |only data/House.rda |binary data/Hubble.rda |binary data/InsurQuotes.rda |binary data/Kinder.rda |binary data/Leddiode.rda |binary data/LostR.rda |binary data/MilkCarton.rda |binary data/Phenyl.rda |binary data/Phone.rda |binary data/Rat.rda |binary data/Ratbp.rda |binary data/Refrigerator.rda |binary data/Roacheggs.rda |binary data/SBIQ.rda |binary data/SDS4.rda |binary data/Salinity.rda |binary data/Schizo.rda |binary data/Score.rda |binary data/SimDataST.rda |binary data/SimDataXT.rda |binary data/Soccer.rda |binary data/StatTemps.rda |binary data/Stschool.rda |binary data/Sundig.rda |binary data/SurfaceSpain.rda |binary data/Swimtimes.rda |binary data/TOE.rda |binary data/Tennis.rda |binary data/TestScores.rda |binary data/Tire.rda |binary data/TireWear.rda |binary data/Top20.rda |binary data/URLaddress.rda |binary data/WCST.rda |binary data/Wait.rda |binary data/Washer.rda |binary data/Water.rda |binary data/WeightGain.rda |only data/WheatSpain.rda |binary data/Wool.rda |binary data/biomass.rda |binary data/fagus.rda |binary data/food.rda |binary data/glucose.rda |binary data/janka.rda |only data/satfruit.rda |binary data/sunflower.rda |binary data/titanic3.rda |binary data/vit2005.rda |binary data/wheatUSA2004.rda |binary man/Aggression.Rd | 6 +++--- man/Apple.Rd | 8 ++++++++ man/AptSize.Rd | 6 ++---- man/Baberuth.Rd | 6 ++---- man/Bac.Rd | 5 ++--- man/Battery.Rd | 8 ++++---- man/Bodyfat.Rd | 4 +--- man/Calculus.Rd | 5 ++--- man/Cars2004EU.Rd | 4 +--- man/Chips.Rd | 16 ++++++++++------ man/CircuitDesigns.Rd | 4 ++++ man/CosAma.Rd | 5 +---- man/Cows.Rd | 4 +--- man/Depend.Rd |only man/Drosophila.Rd | 4 +--- man/EPIDURAL.Rd | 9 +++++---- man/EPIDURALf.Rd | 4 +--- man/EURD.Rd | 4 +++- man/Engineer.Rd | 6 +++--- man/FCD.Rd | 5 ++--- man/Fertilize.Rd | 5 ++--- man/Formula1.Rd | 5 ++--- man/GD.Rd | 16 ++++++++++++---- man/Grades.Rd | 7 ++++--- man/Grocery.Rd | 5 ++--- man/HSwrestler.Rd | 8 +++----- man/HardWater.Rd |only man/House.Rd | 6 ++---- man/Hubble.Rd | 11 ++++++----- man/InsurQuotes.Rd | 6 ++---- man/Kinder.Rd | 7 ++++--- man/Leddiode.Rd | 5 ++--- man/LostR.Rd | 4 +--- man/MilkCarton.Rd | 5 ++--- man/PASWR-package.Rd | 4 ++-- man/Phenyl.Rd | 5 ++--- man/Phone.Rd | 5 ++--- man/Rat.Rd | 5 ++--- man/Ratbp.Rd | 5 ++--- man/Refrigerator.Rd | 5 ++--- man/Roacheggs.Rd | 11 ++++++++--- man/SBIQ.Rd | 9 ++++----- man/SDS4.Rd | 4 +--- man/SIGN.test.Rd | 5 ++--- man/Salinity.Rd | 5 ++--- man/Schizo.Rd | 5 +++++ man/Score.Rd | 5 +---- man/SimDataST.Rd | 4 +--- man/SimDataXT.Rd | 4 +--- man/Soccer.Rd | 6 ++---- man/StatTemps.Rd | 4 +--- man/Stschool.Rd | 6 ++---- man/Sundig.Rd | 5 ++--- man/SurfaceSpain.Rd | 7 ++++--- man/Swimtimes.Rd | 6 ++---- man/TOE.Rd | 5 ++++- man/Tennis.Rd | 5 ++--- man/TestScores.Rd | 5 ++--- man/Tire.Rd | 4 +--- man/TireWear.Rd | 9 ++++----- man/Top20.Rd | 5 ++--- man/URLaddress.Rd | 4 +--- man/WCST.Rd | 4 +++- man/Wait.Rd | 5 ++--- man/Washer.Rd | 5 ++--- man/Water.Rd | 5 ++--- man/WeightGain.Rd |only man/WheatSpain.Rd | 5 ++--- man/Wool.Rd | 5 ++--- man/bino.gen.Rd | 1 - man/biomass.Rd | 4 +--- man/checking.plots.Rd | 7 +++---- man/fagus.Rd | 4 +--- man/food.Rd | 4 +--- man/glucose.Rd | 5 ++--- man/interval.plot.Rd | 1 - man/janka.Rd |only man/ksLdist.Rd | 1 - man/ksdist.Rd | 1 - man/oneway.plots.Rd | 6 ++---- man/satfruit.Rd | 7 ++++--- man/sunflower.Rd | 4 +--- man/titanic3.Rd | 6 ++---- man/tsum.test.Rd | 21 +++++++++++---------- man/twoway.plots.Rd | 2 +- man/vit2005.Rd | 12 ++++++------ man/wheatUSA2004.Rd | 7 +++---- man/wilcoxE.test.Rd | 6 +++--- man/z.test.Rd | 18 ++++++++++-------- man/zsum.test.Rd | 16 +++++++++++----- 187 files changed, 277 insertions(+), 309 deletions(-)
Author: John Maindonald and W. John Braun
Title: Data Analysis And Graphics data and functions
Description: various data sets used in examples and exercises in the
book Maindonald, J.H. and Braun, W.J. (2003, 2007) "Data
Analysis and Graphics Using R".
Diff between DAAG versions 1.00 dated 2009-08-23 and 1.01 dated 2009-11-25
DESCRIPTION | 8 ++++---- INDEX | 14 +++++++------- R/pause.R | 3 +-- R/qreference.R | 1 + 4 files changed, 13 insertions(+), 13 deletions(-)
Author: Andreas F. Hofmann, Karline Soetaert, Filip J.R. Meysman
Title: AquaEnv - an integrated development toolbox for aquatic chemical
model generation
Description: AquaEnv is an integrated development toolbox for aquatic
chemical model generation focused on (ocean) acidification and
CO2 air-water exchange. It contains all elements necessary to
model the pH, the related CO2 air-water exchange, as well as
aquatic acid-base chemistry in general for an arbitrary marine,
estuarine or freshwater system. Also chemical batches can be
modelled. Next to the routines necessary to calculate desired
information, AquaEnv also contains a suite of tools to
visualize this information. Furthermore, AquaEnv can not only
be used to build dynamic models of aquatic systems, but it can
also serve as a simple desktop tool for the experimental
aquatic chemist to generate and visualize all possible derived
information from a set of measurements with one single easy to
use R function. Additionally, the sensitivity of the system to
variations in the input variables can be visualized.
Diff between AquaEnv versions 0.8 dated 2009-11-18 and 0.8-1 dated 2009-11-25
DESCRIPTION | 10 R/aquaenv_private_DSApHfunctions.R | 292 inst/doc/AquaEnv-ConstantsAndFormulae.pdf | 5425 +++++----- inst/doc/AquaEnv-PrivateFunctions.pdf |binary inst/doc/AquaEnv.pdf |14858 ++++++++++++++---------------- inst/doc/AquaEnv.tex | 5854 +++++------ 6 files changed, 13152 insertions(+), 13287 deletions(-)