Wed, 25 Nov 2009

New package twopartqtl with initial version 1.0
Package: twopartqtl
Type: Package
Title: QTL Mapping for Point-mass Mixtures
Version: 1.0
Date: 2009-07-22
Author: Sandra L. Taylor
Maintainer: Sandra L. Taylor
Description: Composite interval mapping to identify QTLs in experimental crosses with phenotypes distributed as point-mass mixtures
Depends: qtl
License: GPL (>= 2)
LazyLoad: yes
Packaged: Tue Nov 24 08:45:32 2009; sltaylor
Repository: CRAN
Date/Publication: 2009-11-25 08:29:47

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Package nnDiag updated to version 0.0-4 with previous version 0.0-3 dated 2009-11-17

Author: Brian Walters , Andrew O. Finley , Zhen Zhang
Title: k-Nearest Neighbor Diagnostic Tools
Description: A suite of graphical diagnostic tools to evaluate kNN classifications.

Diff between nnDiag versions 0.0-3 dated 2009-11-17 and 0.0-4 dated 2009-11-25

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Package hapassoc updated to version 1.2-3 with previous version 1.2-2 dated 2008-10-14

Author: K. Burkett , B. McNeney , J. Graham , with code for case-control data contributed by Zhijian Chen
Title: Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm
Description: The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs.

Diff between hapassoc versions 1.2-2 dated 2008-10-14 and 1.2-3 dated 2009-11-25

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Package bayesGARCH updated to version 1-00.05 with previous version 1-00.04 dated 2009-05-11

Author: David Ardia
Title: Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations
Description: This package provides the bayesGARCH function which performs the Bayesian estimation of the GARCH(1,1) model with Student's t innovations.

Diff between bayesGARCH versions 1-00.04 dated 2009-05-11 and 1-00.05 dated 2009-11-25

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Package ascii updated to version 0.4 with previous version 0.3.2 dated 2009-10-28

Author: David Hajage
Title: Export R objects to several markup languages
Description: Coerce R object to asciidoc, txt2tags, restructuredText or org syntax. Package comes with a set of drivers for Sweave.

Diff between ascii versions 0.3.2 dated 2009-10-28 and 0.4 dated 2009-11-25

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Package accuracy updated to version 1.34 with previous version 1.33 dated 2009-10-30

Author: Micah Altman, Jeff Gill, Michael P. McDonald
Title: Tools for testing and improving accuracy of statistical results.
Description: This is a suite of tools designed to test and improve the accuracy of statistical computation, including: Summarization of the sensitivity of linear and non-linear models (lm, glm, mle, nls) to measurement and numerical error; Sensitivity analysis of dozens of models as run through Zelig; A generalized cholesky method for correcting non-invertable Hessians; Tests for the global optimality of non-linear regression and maximum likelihood results; Tools for obtaining true random numbers using entropy collected from the system and/or entropy servers on the internet; A method for converting floating point numbers to normalized fractions; Benchmark data for checking the accuracy of basic distribution functions.

Diff between accuracy versions 1.33 dated 2009-10-30 and 1.34 dated 2009-11-25

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Package PBSmodelling updated to version 2.51.168 with previous version 2.50.162 dated 2009-10-20

Author: Jon T. Schnute , Alex Couture-Beil , Rowan Haigh , and Anisa Egeli
Title: GUI Tools Made Easy: Interact with Models, Explore Data, Give Dynamic Presentations
Description: PBS Modelling provides software to facilitate the design, testing, and operation of computer models. It focuses particularly on tools that make it easy to construct and edit a customized graphical user interface (GUI). Although it depends heavily on the R interface to the Tcl/Tk package, a user does not need to know Tcl/Tk. The package contains examples that illustrate models built with other R packages, including PBSmapping, deSolve, PBSddesolve, and BRugs. It also serves as a convenient prototype for building new R packages, along with instructions and batch files to facilitate that process. The R directory '.../library/PBSmodelling/doc' includes a complete user guide PBSmodelling-UG.pdf. To use this package effectively, please consult the guide.

Diff between PBSmodelling versions 2.50.162 dated 2009-10-20 and 2.51.168 dated 2009-11-25

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Package PASWR updated to version 1.1 with previous version 1.0 dated 2008-02-12

Author: Alan T. Arnholt
Title: PROBABILITY and STATISTICS WITH R
Description: Data and functions for the book PROBABILITY and STATISTICS WITH R.

Diff between PASWR versions 1.0 dated 2008-02-12 and 1.1 dated 2009-11-25

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New package PBSadmb with initial version 0.60.43
Package: PBSadmb
Version: 0.60.43
Date: 2009-11-20
Title: PBS ADMB
Author: Jon T. Schnute, Rowan Haigh
Maintainer: Jon T. Schnute
Depends: R (>= 2.7.0), PBSmodelling (>= 2.50)
Description: R Support for ADMB (Automatic Differentiation Model Builder)
License: GPL (>= 2)
Packaged: 2009-11-21 03:33:50 UTC; Fish
Repository: CRAN
Date/Publication: 2009-11-25 08:29:21

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New package LogitNet with initial version 0.1-1
Package: LogitNet
Version: 0.1-1
Date: 2009-11-20
Title: Infer network based on binary arrays using regularized logistic regression
Author: Pei Wang , Dennis Chao , Li Hsu
Maintainer: Pei Wang
Description: LogitNet is developed for inferring network of binary variables under the high-dimension-low-sample-size setting
License: GPL (>= 2)
Packaged: 2009-11-25 03:43:04 UTC; pwang
Repository: CRAN
Date/Publication: 2009-11-25 08:38:21

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Package DAAG updated to version 1.01 with previous version 1.00 dated 2009-08-23

Author: John Maindonald and W. John Braun
Title: Data Analysis And Graphics data and functions
Description: various data sets used in examples and exercises in the book Maindonald, J.H. and Braun, W.J. (2003, 2007) "Data Analysis and Graphics Using R".

Diff between DAAG versions 1.00 dated 2009-08-23 and 1.01 dated 2009-11-25

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Package AquaEnv updated to version 0.8-1 with previous version 0.8 dated 2009-11-18

Author: Andreas F. Hofmann, Karline Soetaert, Filip J.R. Meysman
Title: AquaEnv - an integrated development toolbox for aquatic chemical model generation
Description: AquaEnv is an integrated development toolbox for aquatic chemical model generation focused on (ocean) acidification and CO2 air-water exchange. It contains all elements necessary to model the pH, the related CO2 air-water exchange, as well as aquatic acid-base chemistry in general for an arbitrary marine, estuarine or freshwater system. Also chemical batches can be modelled. Next to the routines necessary to calculate desired information, AquaEnv also contains a suite of tools to visualize this information. Furthermore, AquaEnv can not only be used to build dynamic models of aquatic systems, but it can also serve as a simple desktop tool for the experimental aquatic chemist to generate and visualize all possible derived information from a set of measurements with one single easy to use R function. Additionally, the sensitivity of the system to variations in the input variables can be visualized.

Diff between AquaEnv versions 0.8 dated 2009-11-18 and 0.8-1 dated 2009-11-25

 DESCRIPTION                               |   10 
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 6 files changed, 13152 insertions(+), 13287 deletions(-)

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