Thu, 26 Nov 2009

Package tnet updated to version 0.1.3 with previous version 0.1.2 dated 2009-09-18

Author: Tore Opsahl
Title: tnet: Software for Analysis of Weighted, Two-mode, and Longitudinal networks
Description: R package to analyse weighted, two-mode, and longitudinal networks.

Diff between tnet versions 0.1.2 dated 2009-09-18 and 0.1.3 dated 2009-11-26

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Package spdep updated to version 0.4-54 with previous version 0.4-52 dated 2009-11-05

Author: Roger Bivand , with contributions by Luc Anselin, Renato Assunção, Olaf Berke, Andrew Bernat, Marilia Carvalho, Yongwan Chun, Bjarke Christensen, Carsten Dormann, Stéphane Dray, Rein Halbersma, Elias Krainski, Nicholas Lewin-Koh, Hongfei Li, Jielai Ma, Giovanni Millo, Werner Mueller, Hisaji Ono, Pedro Peres-Neto, Markus Reder, Michael Tiefelsdorf, and Danlin Yu.
Title: Spatial dependence: weighting schemes, statistics and models
Description: A collection of functions to create spatial weights matrix objects from polygon contiguities, from point patterns by distance and tesselations, for summarising these objects, and for permitting their use in spatial data analysis, including regional aggregation by minimum spanning tree; a collection of tests for spatial autocorrelation, including global Moran's I, APLE, Geary's C, Hubert/Mantel general cross product statistic, Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G and multicoloured join count statistics, local Moran's I and Getis/Ord G, saddlepoint approximations and exact tests for global and local Moran's I; and functions for estimating spatial simultaneous autoregressive (SAR) lag and error models, impact measures for lag models, weighted and unweighted SAR and CAR spatial regression models, semi-parametric and Moran eigenvector spatial filtering, GM SAR error models, and generalized spatial two stage least squares models.

Diff between spdep versions 0.4-52 dated 2009-11-05 and 0.4-54 dated 2009-11-26

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Package pARccs updated to version 0.2-1 with previous version 0.1-1 dated 2008-10-15

Author: Christiane Raemsch
Title: Estimation of attributable and partial attributable risks (AR and PAR) and visualization of attributable risks from case-control data
Description: Functions to estimate (partial) attributable risks from case-control data with corresponding percentile or BCa confidence intervals; Visualization of attributable riks

Diff between pARccs versions 0.1-1 dated 2008-10-15 and 0.2-1 dated 2009-11-26

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Package nor1mix updated to version 1.1-1 with previous version 1.0-7 dated 2007-06-12

Author: Martin Mächler
Title: Normal (1-d) Mixture Models (S3 Classes and Methods)
Description: Onedimensional Normal Mixture Models Classes, for, e.g., density estimation or clustering algorithms research and teaching; providing the widely used Marron-Wand densities, see ?MarronWand.

Diff between nor1mix versions 1.0-7 dated 2007-06-12 and 1.1-1 dated 2009-11-26

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Package log10 updated to version 0.1.0-01 with previous version 0.0.3-05 dated 2009-11-22

Author: Timothee Poisot
Title: Decimal log plotting in two and three dimensions
Description: Provides a range of function for 10-log plotting

Diff between log10 versions 0.0.3-05 dated 2009-11-22 and 0.1.0-01 dated 2009-11-26

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Package FrF2 updated to version 1.0-2 with previous version 1.0-1 dated 2009-11-18

Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional Factorial designs. Furthermore, analysis tools for Fractional Factorial designs with 2-level factors are offered (main effects and interaction plots for all factors simultaneously, cube plot for looking at the simultaneous effects of three factors, full or half normal plot, alias structure in a more readable format than with the built-in function alias). The package is currently subject to intensive development. While much of the intended functionality is already available, some changes and improvements are still to be expected. Suggestions are welcome.

Diff between FrF2 versions 1.0-1 dated 2009-11-18 and 1.0-2 dated 2009-11-26

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Package FactoClass updated to version 1.0.3 with previous version 1.0.1 dated 2009-07-21

Author: Campo Elias Pardo and Pedro Cesar del Campo , with the contributions from Camilo Jose Torres , Ivan Diaz , Mauricio Sadinle .
Title: Combination of Factorial Methods and Cluster Analysis
Description: Multivariate exploration of a data table with factorial analysis and cluster methods.

Diff between FactoClass versions 1.0.1 dated 2009-07-21 and 1.0.3 dated 2009-11-26

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Package DoE.base updated to version 0.9-8 with previous version 0.9-7 dated 2009-11-05

Author: Ulrike Groemping
Title: Full factorials, orthogonal arrays and base utilities for DoE packages
Description: This package creates full factorial experimental designs and designs based on orthogonal arrays for (industrial) experiments. Additionally, it provides some utility functions used also by other DoE packages.

Diff between DoE.base versions 0.9-7 dated 2009-11-05 and 0.9-8 dated 2009-11-26

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Package copas updated to version 0.6-3 with previous version 0.6-2 dated 2009-04-15

Author: James Carpenter , Guido Schwarzer
Title: Statistical methods to model and adjust for bias in meta-analysis
Description: Copas selection model.

Diff between copas versions 0.6-2 dated 2009-04-15 and 0.6-3 dated 2009-11-26

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Package NMF updated to version 0.2.2 with previous version 0.2 dated 2009-11-23

Author: Renaud Gaujoux
Title: Framework for Nonnegative Matrix Factorization (NMF) algorithms.
Description: This package provides a framework to perform Non-negative Matrix Factorization (NMF). It implements a set of already published algorithms and seeding methods, and provides a framework to test and develop new algorithms.

Diff between NMF versions 0.2 dated 2009-11-23 and 0.2.2 dated 2009-11-26

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Package timereg updated to version 1.2-7 with previous version 1.2-5 dated 2009-07-31

Author: Thomas Scheike with contributions from Torben Martinussen and Jeremy Silver
Title: timereg package for Flexible regression models for survival data.
Description: Programs for Martinussen and Scheike (2006), `Dynamic Regression Models for Survival Data', Springer Verlag. Plus more recent developments. Additive survival model, semiparmetric proportional odds model, cumulative residuals, excess risk models and more. Flexible competing risks regression including GOF-tests. Two-stage frailty modelling.

Diff between timereg versions 1.2-5 dated 2009-07-31 and 1.2-7 dated 2009-11-26

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Package msm updated to version 0.9.5 with previous version 0.9.4 dated 2009-11-13

Author: Christopher Jackson
Title: Multi-state Markov and hidden Markov models in continuous time
Description: Functions for fitting general continuous-time Markov and hidden Markov multi-state models to longitudinal data. Both Markov transition rates and the hidden Markov output process can be modelled in terms of covariates. A variety of observation schemes are supported, including processes observed at arbitrary times, completely-observed processes, and censored states.

Diff between msm versions 0.9.4 dated 2009-11-13 and 0.9.5 dated 2009-11-26

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Package fossil updated to version 0.2.2 with previous version 0.2.1 dated 2009-04-14

Author: Matthew Vavrek
Title: Palaeoecological and Palaeogeographical Analysis Tools
Description: A set of analytical tools useful in analysing ecological and geographical data sets, both ancient and modern. The package includes functions for estimating species richness (Chao 1 and 2, ACE, ICE, Jacknife), shared species/beta diversity, species area curves and geographic distances and areas.

Diff between fossil versions 0.2.1 dated 2009-04-14 and 0.2.2 dated 2009-11-26

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Package ascii updated to version 0.4-1 with previous version 0.4 dated 2009-11-25

Author: David Hajage
Title: Export R objects to several markup languages
Description: Coerce R object to asciidoc, txt2tags, restructuredText or org syntax. Package comes with a set of drivers for Sweave.

Diff between ascii versions 0.4 dated 2009-11-25 and 0.4-1 dated 2009-11-26

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New package OligoSpecificitySystem with initial version 1.0
Package: OligoSpecificitySystem
Title: Oligo Specificity System
Version: 1.0
Date: 2009-10-15
Author: Rory Michelland ,Laurent Cauquil
Maintainer: Laurent Cauquil
Description: Calculate the theorical specificity of a system of multiple primers used for PCR, qPCR primers or degenerated primer design
Depends: tcltk,tkrplot
License: GPL-2
Packaged: 2009-11-25 11:06:27 UTC; Rory
Repository: CRAN
Date/Publication: 2009-11-26 08:03:07

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Package GWAF updated to version 1.2 with previous version 1.1 dated 2009-09-25

Author: Ming-Huei Chen and Qiong Yang
Title: Genome-Wide Association analyses with Family data
Description: Functions to test genetic associations between SNPs and a continuous/dichotomous trait using family data, and to make genome-wide p-value plot and QQ plot.

Diff between GWAF versions 1.1 dated 2009-09-25 and 1.2 dated 2009-11-26

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