Author: Simon Wood
Diff between mgcv versions 1.6-0 dated 2009-11-18 and 1.6-1 dated 2009-12-01
Title: GAMs with GCV/AIC/REML smoothness estimation and GAMMs by PQL
Description: Routines for GAMs and other generalized ridge regression
with multiple smoothing parameter selection by GCV, REML or
UBRE/AIC. Also GAMMs by REML or PQL. Includes a gam() function.
DESCRIPTION | 6 +++---
R/mgcv.r | 8 ++++----
R/smooth.r | 13 +++++++++----
changeLog | 14 ++++++++++++++
man/bam.Rd | 5 +++--
man/cSplineDes.Rd | 22 ++++++++++++++++++++--
man/choose.k.Rd | 33 ++++++++++++++++++++++++++++++---
po/R-mgcv.pot | 3 +++
8 files changed, 86 insertions(+), 18 deletions(-)
Author: Don Barkauskas
Title: Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance
Mass Spectrometry Data
Description: This package was developed partially with funding from the
NIH Training Program in Biomolecular Technology
(2-T32-GM08799).
Diff between FTICRMS versions 0.7 dated 2009-02-15 and 0.8 dated 2009-12-01
DESCRIPTION | 27 +++--- R/FTICRMS-internal.R | 35 ++++---- R/baseline.R | 34 ++++---- R/display.tests.R | 11 ++ R/locate.peaks.R | 31 +++++-- R/make.par.file.R | 23 +++-- R/run.analysis.R | 156 ++++++++++++++++++++++++-------------- R/run.baselines.R | 14 ++- R/run.cluster.matrix.R | 188 ++++++++++++++++++++++++++++++++++------------ R/run.lrg.peaks.R | 39 +++++++-- R/run.peaks.R | 32 ++++++- R/run.strong.peaks.R | 32 ++++++- man/FTICRMS-internal.Rd | 2 man/FTICRMS-package.Rd | 4 man/baseline.Rd | 137 +++++++++++++++++++++------------ man/display.tests.Rd | 62 ++++++++++----- man/extract.pars.Rd | 68 ++++++++++++---- man/locate.peaks.Rd | 62 +++++++++------ man/make.par.file.Rd | 87 +++++++++++++-------- man/run.all.Rd | 72 +++++++++++------ man/run.analysis.Rd | 166 ++++++++++++++++++++++++++++------------ man/run.baselines.Rd | 63 +++++++++++---- man/run.cluster.matrix.Rd | 184 +++++++++++++++++++++++++++++++-------------- man/run.lrg.peaks.Rd | 86 +++++++++++++-------- man/run.peaks.Rd | 94 +++++++++++++++-------- man/run.strong.peaks.Rd | 120 +++++++++++++++++++++-------- 26 files changed, 1258 insertions(+), 571 deletions(-)
Author: Andreas Alfons
Title: Simulation Framework
Description: A general framework for statistical simulation.
Diff between simFrame versions 0.1.1 dated 2009-09-03 and 0.1.2 dated 2009-12-01
simFrame-0.1.1/simFrame/R/allClasses.R |only simFrame-0.1.1/simFrame/R/allGenerics.R |only simFrame-0.1.2/simFrame/DESCRIPTION | 8 ++++---- simFrame-0.1.2/simFrame/NAMESPACE | 2 ++ simFrame-0.1.2/simFrame/NEWS | 11 +++++++++++ simFrame-0.1.2/simFrame/R/aaaClasses.R |only simFrame-0.1.2/simFrame/R/aaaGenerics.R |only simFrame-0.1.2/simFrame/R/aggregate.R |only simFrame-0.1.2/simFrame/R/contaminate.R | 6 +++++- simFrame-0.1.2/simFrame/R/initialize.R | 9 +++++++++ simFrame-0.1.2/simFrame/R/setNA.R | 5 +++-- simFrame-0.1.2/simFrame/R/simXyplot.R | 2 +- simFrame-0.1.2/simFrame/man/NAControl-class.Rd | 3 +++ simFrame-0.1.2/simFrame/man/aggregate-methods.Rd |only simFrame-0.1.2/simFrame/man/plot-methods.Rd | 8 ++++---- simFrame-0.1.2/simFrame/man/simFrame-package.Rd | 7 ++++--- 16 files changed, 46 insertions(+), 15 deletions(-)
Author: Matthias Templ
Title: Statistical Disclosure Control methods for the generation of
public- and scientific-use files.
Description: Data from statistical agencies and other institutions are
mostly confidential. This package can be used for the
generation of save (micro)data, i.e. for the generation of
public- and scientific-use files. The package includes also a
graphical user interface.
Diff between sdcMicro versions 2.6.3 dated 2009-11-29 and 2.6.4 dated 2009-12-01
DESCRIPTION | 8 ++++---- R/sdcGUI.r | 6 +++--- inst/doc/Rplots.pdf |only inst/doc/sdcMicroPaper-001.eps |only inst/doc/sdcMicroPaper-001.pdf |only inst/doc/sdcMicroPaper.pdf |binary inst/doc/sdcMicroPaper.tex |only 7 files changed, 7 insertions(+), 7 deletions(-)
Author: John Boik
Diff between mixlow versions 0.01-2 dated 2009-05-11 and 0.02 dated 2009-12-01
Title: mixlow method for assessing drug synergism
Description: mixlow software for assessing drug synergism/antagonism
mixlow-0.01-2/mixlow/R/plotLoeweData.R |only
mixlow-0.01-2/mixlow/R/plotMixlowData.R |only
mixlow-0.01-2/mixlow/R/plotNlmeData.R |only
mixlow-0.01-2/mixlow/R/plotNlsData.R |only
mixlow-0.01-2/mixlow/data/loeweData.rda |only
mixlow-0.01-2/mixlow/data/mixlowData.rda |only
mixlow-0.01-2/mixlow/data/nlmeData.rda |only
mixlow-0.01-2/mixlow/data/nlsData.rda |only
mixlow-0.01-2/mixlow/data/trayData.rda |only
mixlow-0.01-2/mixlow/man/plotLoeweData.Rd |only
mixlow-0.01-2/mixlow/man/plotMixlowData.Rd |only
mixlow-0.01-2/mixlow/man/plotNlmeData.Rd |only
mixlow-0.01-2/mixlow/man/plotNlsData.Rd |only
mixlow-0.02/mixlow/CITATION |only
mixlow-0.02/mixlow/DESCRIPTION | 7
mixlow-0.02/mixlow/NAMESPACE | 25 +
mixlow-0.02/mixlow/R/LoeweCalculateScore.R | 5
mixlow-0.02/mixlow/R/LoeweCollectData.R | 2
mixlow-0.02/mixlow/R/LoeweGetCov.R | 95 +++++-
mixlow-0.02/mixlow/R/NlmeCalculateR2.R | 35 +-
mixlow-0.02/mixlow/R/NlmeCall.R | 43 +--
mixlow-0.02/mixlow/R/NlmeSetupCall.R | 19 -
mixlow-0.02/mixlow/R/NlsPlotGetData.R | 20 -
mixlow-0.02/mixlow/R/doLoewe.R | 251 +++++++++++++-----
mixlow-0.02/mixlow/R/doNlme.R | 47 ++-
mixlow-0.02/mixlow/R/doNls.R | 4
mixlow-0.02/mixlow/R/mixlowPlotGetData.R | 8
mixlow-0.02/mixlow/R/plot.loeweData.R |only
mixlow-0.02/mixlow/R/plot.mixlowData.R |only
mixlow-0.02/mixlow/R/plot.nlmeData.R |only
mixlow-0.02/mixlow/R/plot.nlsData.R |only
mixlow-0.02/mixlow/R/prepareData.R | 32 +-
mixlow-0.02/mixlow/R/print.loeweData.R |only
mixlow-0.02/mixlow/R/print.mixlowData.R |only
mixlow-0.02/mixlow/R/print.nlmeData.R |only
mixlow-0.02/mixlow/R/print.nlsData.R |only
mixlow-0.02/mixlow/R/readDataFile.R | 3
mixlow-0.02/mixlow/data/loeweData.RData |only
mixlow-0.02/mixlow/data/mixlowData.RData |only
mixlow-0.02/mixlow/data/nlmeData.RData |only
mixlow-0.02/mixlow/data/nlsData.RData |only
mixlow-0.02/mixlow/data/trayData.RData |only
mixlow-0.02/mixlow/inst/exdata/A549_vin_topo_data.txt |only
mixlow-0.02/mixlow/man/doLoewe.Rd | 2
mixlow-0.02/mixlow/man/doNlme.Rd | 23 -
mixlow-0.02/mixlow/man/doNls.Rd | 4
mixlow-0.02/mixlow/man/loeweData.Rd | 14 -
mixlow-0.02/mixlow/man/mixlow-package.Rd | 12
mixlow-0.02/mixlow/man/mixlowData.Rd | 10
mixlow-0.02/mixlow/man/nlmeData.Rd | 12
mixlow-0.02/mixlow/man/nlsData.Rd | 10
mixlow-0.02/mixlow/man/plot.loeweData.Rd |only
mixlow-0.02/mixlow/man/plot.mixlowData.Rd |only
mixlow-0.02/mixlow/man/plot.nlmeData.Rd |only
mixlow-0.02/mixlow/man/plot.nlsData.Rd |only
mixlow-0.02/mixlow/man/prepareData.Rd | 17 -
mixlow-0.02/mixlow/man/print.loeweData.Rd |only
mixlow-0.02/mixlow/man/print.mixlowData.Rd |only
mixlow-0.02/mixlow/man/print.nlmeData.Rd |only
mixlow-0.02/mixlow/man/print.nlsData.Rd |only
mixlow-0.02/mixlow/man/readDataFile.Rd | 8
61 files changed, 463 insertions(+), 245 deletions(-)
Author: Vincent Calcagno
Diff between glmulti versions 0.5-3 dated 2009-10-20 and 0.6-1 dated 2009-12-01
Title: GLM model selection and multimodel inference made easy
Description: Automated model selection for GLMs. Provides a wrapper for
glm and similar functions, automatically generating all
possible models (under constraints set by the user) with the
specified response and explanatory variables, and finding the
best models in terms of some Information Criterion (AIC, AICc
or BIC). Can handle very large numbers of candidate models.
Features a Genetic Algorithm to find the best models when an
exhaustive screening of the candidates is not feasible.
glmulti-0.5-3/glmulti/R/glmulti.R |only
glmulti-0.5-3/glmulti/R/onLoad.R |only
glmulti-0.6-1/glmulti/.onLoad.R | 16
glmulti-0.6-1/glmulti/ChangeLog |only
glmulti-0.6-1/glmulti/DESCRIPTION | 10
glmulti-0.6-1/glmulti/NAMESPACE | 17
glmulti-0.6-1/glmulti/R/glmulti.r |only
glmulti-0.6-1/glmulti/inst/java/MANIFEST.MF | 2
glmulti-0.6-1/glmulti/inst/java/glmulti.jar |binary
glmulti-0.6-1/glmulti/inst/java/glmulti/GLMModel.class |binary
glmulti-0.6-1/glmulti/inst/java/glmulti/ModelGenerator.class |binary
glmulti-0.6-1/glmulti/man/aic-methods.Rd |only
glmulti-0.6-1/glmulti/man/aic.Rd |only
glmulti-0.6-1/glmulti/man/aicc-methods.Rd |only
glmulti-0.6-1/glmulti/man/bic-methods.Rd |only
glmulti-0.6-1/glmulti/man/coef.glmulti.Rd |only
glmulti-0.6-1/glmulti/man/consensus-methods.Rd |only
glmulti-0.6-1/glmulti/man/consensus.Rd |only
glmulti-0.6-1/glmulti/man/getfit-methods.Rd |only
glmulti-0.6-1/glmulti/man/getfit.Rd |only
glmulti-0.6-1/glmulti/man/glmulti-class.Rd |only
glmulti-0.6-1/glmulti/man/glmulti-methods.Rd |only
glmulti-0.6-1/glmulti/man/glmulti.Rd | 204 +++++------
glmulti-0.6-1/glmulti/man/qaic-methods.Rd |only
glmulti-0.6-1/glmulti/man/qaicc-methods.Rd |only
glmulti-0.6-1/glmulti/man/summary.glmulti.Rd |only
glmulti-0.6-1/glmulti/man/write-methods.Rd |only
glmulti-0.6-1/glmulti/man/write.Rd |only
28 files changed, 132 insertions(+), 117 deletions(-)
Author: Arnost Komarek
Diff between glmmAK versions 1.3 dated 2009-04-27 and 1.3-1 dated 2009-12-01
Title: Generalized Linear Mixed Models
Description: Later
DESCRIPTION | 8 ++++----
R/cumlogit.R | 11 ++++++-----
R/cumlogit.help.R | 7 ++++---
3 files changed, 14 insertions(+), 12 deletions(-)