Author: Jeff Hallman
Diff between tis versions 1.8 dated 2009-11-19 and 1.9 dated 2009-12-09
Title: Time Indexes and Time Indexed Series
Description: Functions and S3 classes for time indexes and time indexed
series, which are compatible with FAME frequencies.
DESCRIPTION | 7 +++----
NEWS | 7 +++++++
R/convert.R | 8 +++++---
3 files changed, 15 insertions(+), 7 deletions(-)
Author: Hadley Wickham
Diff between ggplot2 versions 0.8.3 dated 2009-04-20 and 0.8.4 dated 2009-12-09
Title: An implementation of the Grammar of Graphics
Description: An implementation of the grammar of graphics in R. It
combines the advantages of both base and lattice graphics:
conditioning and shared axes are handled automatically, and you
can still build up a plot step by step from multiple data
sources. It also implements a sophisticated multidimensional
conditioning system and a consistent interface to map data to
aesthetic attributes. See the ggplot2 website for more
information, documentation and examples.
ggplot2-0.8.3/ggplot2/man/nullGrob-6r.rd |only
ggplot2-0.8.3/ggplot2/texput.log |only
ggplot2-0.8.4/ggplot2/CHANGELOG | 45 +++++
ggplot2-0.8.4/ggplot2/DESCRIPTION | 8 -
ggplot2-0.8.4/ggplot2/NEWS | 78 ++++------
ggplot2-0.8.4/ggplot2/R/aaa-html.r | 2
ggplot2-0.8.4/ggplot2/R/aes.r | 24 +--
ggplot2-0.8.4/ggplot2/R/annotation.r | 3
ggplot2-0.8.4/ggplot2/R/coord-polar.r | 1
ggplot2-0.8.4/ggplot2/R/facet-grid-.r | 4
ggplot2-0.8.4/ggplot2/R/facet-wrap.r | 25 +--
ggplot2-0.8.4/ggplot2/R/fortify-lm.r | 14 -
ggplot2-0.8.4/ggplot2/R/geom-.r | 2
ggplot2-0.8.4/ggplot2/R/geom-blank.r | 2
ggplot2-0.8.4/ggplot2/R/geom-boxplot.r | 5
ggplot2-0.8.4/ggplot2/R/geom-path-.r | 4
ggplot2-0.8.4/ggplot2/R/geom-point-.r | 8 -
ggplot2-0.8.4/ggplot2/R/geom-point-jitter.r | 2
ggplot2-0.8.4/ggplot2/R/geom-ribbon-.r | 7
ggplot2-0.8.4/ggplot2/R/geom-smooth.r | 3
ggplot2-0.8.4/ggplot2/R/grob-grid.r | 4
ggplot2-0.8.4/ggplot2/R/grob-null.r | 30 ++-
ggplot2-0.8.4/ggplot2/R/guides-axis.r | 4
ggplot2-0.8.4/ggplot2/R/guides-legend.r | 4
ggplot2-0.8.4/ggplot2/R/layer.r | 10 -
ggplot2-0.8.4/ggplot2/R/plot-build.r | 1
ggplot2-0.8.4/ggplot2/R/plot-render.r | 11 -
ggplot2-0.8.4/ggplot2/R/position-collide.r | 13 +
ggplot2-0.8.4/ggplot2/R/save.r | 4
ggplot2-0.8.4/ggplot2/R/scale-continuous-.r | 2
ggplot2-0.8.4/ggplot2/R/scale-continuous-colour.r | 16 +-
ggplot2-0.8.4/ggplot2/R/scale-datetime.r | 10 +
ggplot2-0.8.4/ggplot2/R/scale-discrete-position.r | 6
ggplot2-0.8.4/ggplot2/R/scale-size.r | 3
ggplot2-0.8.4/ggplot2/R/stat-.r | 5
ggplot2-0.8.4/ggplot2/R/stat-bin.r | 12 +
ggplot2-0.8.4/ggplot2/R/stat-density.r | 7
ggplot2-0.8.4/ggplot2/R/stat-qq.r | 2
ggplot2-0.8.4/ggplot2/R/stat-quantile.r | 4
ggplot2-0.8.4/ggplot2/R/stat-smooth.r | 2
ggplot2-0.8.4/ggplot2/R/stat-spoke.r | 4
ggplot2-0.8.4/ggplot2/R/stat-summary.r | 2
ggplot2-0.8.4/ggplot2/R/theme-elements.r | 2
ggplot2-0.8.4/ggplot2/R/theme.r | 2
ggplot2-0.8.4/ggplot2/R/trans-.r | 2
ggplot2-0.8.4/ggplot2/R/trans-scales.r | 10 +
ggplot2-0.8.4/ggplot2/R/utilities-grid.r | 4
ggplot2-0.8.4/ggplot2/R/utilities-layer.r | 2
ggplot2-0.8.4/ggplot2/R/xxx-digest.r | 7
ggplot2-0.8.4/ggplot2/R/xxx.r | 2
ggplot2-0.8.4/ggplot2/man/absoluteGrob-5d.rd | 2
ggplot2-0.8.4/ggplot2/man/accessors-print-nc.rd | 4
ggplot2-0.8.4/ggplot2/man/add-group-by.rd | 2
ggplot2-0.8.4/ggplot2/man/add-missing-levels-di.rd | 4
ggplot2-0.8.4/ggplot2/man/aes-all-9y.rd | 2
ggplot2-0.8.4/ggplot2/man/aes-to-scale-ty.rd | 4
ggplot2-0.8.4/ggplot2/man/aesdefaults-6k.rd | 4
ggplot2-0.8.4/ggplot2/man/all-examples-run-8j.rd | 4
ggplot2-0.8.4/ggplot2/man/all-html-pages-create-d4.rd | 4
ggplot2-0.8.4/ggplot2/man/all-rdoc-pages-create-7y.rd | 4
ggplot2-0.8.4/ggplot2/man/alpha-wb.rd | 4
ggplot2-0.8.4/ggplot2/man/annotate-kz.rd | 4
ggplot2-0.8.4/ggplot2/man/assign-viewports-r1.rd | 2
ggplot2-0.8.4/ggplot2/man/bin-xb.rd | 6
ggplot2-0.8.4/ggplot2/man/borders-yk.rd | 2
ggplot2-0.8.4/ggplot2/man/breaks-f0.rd | 4
ggplot2-0.8.4/ggplot2/man/ceiling-date-i2.rd | 4
ggplot2-0.8.4/ggplot2/man/check-required-aesthetics-3l.rd | 4
ggplot2-0.8.4/ggplot2/man/clist-a1.rd | 2
ggplot2-0.8.4/ggplot2/man/col-hcl-7m.rd | 4
ggplot2-0.8.4/ggplot2/man/collide-5k.rd | 2
ggplot2-0.8.4/ggplot2/man/comma-1e.rd | 4
ggplot2-0.8.4/ggplot2/man/compare-img-95.rd | 4
ggplot2-0.8.4/ggplot2/man/compute-intercept-2o.rd | 4
ggplot2-0.8.4/ggplot2/man/cunion-dn.rd | 4
ggplot2-0.8.4/ggplot2/man/cut-number-5z.rd | 2
ggplot2-0.8.4/ggplot2/man/cweave-1g.rd | 2
ggplot2-0.8.4/ggplot2/man/date-breaks-d1.rd | 4
ggplot2-0.8.4/ggplot2/man/dhist-z7.rd | 4
ggplot2-0.8.4/ggplot2/man/dir-diff-2f.rd | 4
ggplot2-0.8.4/ggplot2/man/discrete-range-fu.rd | 4
ggplot2-0.8.4/ggplot2/man/dollar-3n.rd | 4
ggplot2-0.8.4/ggplot2/man/empty-cs.rd | 4
ggplot2-0.8.4/ggplot2/man/equal-dims-he.rd | 4
ggplot2-0.8.4/ggplot2/man/equal-ranges-wa.rd | 4
ggplot2-0.8.4/ggplot2/man/expand-range-8l.rd | 4
ggplot2-0.8.4/ggplot2/man/f5.rd | 4
ggplot2-0.8.4/ggplot2/man/firstUpper-kl.rd | 4
ggplot2-0.8.4/ggplot2/man/floor-date-i9.rd | 4
ggplot2-0.8.4/ggplot2/man/force-matrix-us.rd | 4
ggplot2-0.8.4/ggplot2/man/fortify-SpatialPolygonsDataFrame-n8.rd | 4
ggplot2-0.8.4/ggplot2/man/fortify-dm.rd | 4
ggplot2-0.8.4/ggplot2/man/fortify-lm-nd.rd | 4
ggplot2-0.8.4/ggplot2/man/fullseq-20.rd | 4
ggplot2-0.8.4/ggplot2/man/fullseq-date-ol.rd | 2
ggplot2-0.8.4/ggplot2/man/geditGrob-5b.rd | 4
ggplot2-0.8.4/ggplot2/man/geom_abline.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_area.rd | 5
ggplot2-0.8.4/ggplot2/man/geom_bar.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_bin2d.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_boxplot.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_contour.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_crossbar.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_density.rd | 5
ggplot2-0.8.4/ggplot2/man/geom_density2d.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_errorbar.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_errorbarh.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_freqpoly.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_hex.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_histogram.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_hline.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_jitter.rd | 4
ggplot2-0.8.4/ggplot2/man/geom_line.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_linerange.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_path.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_point.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_pointrange.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_polygon.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_quantile.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_rect.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_ribbon.rd | 5
ggplot2-0.8.4/ggplot2/man/geom_rug.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_segment.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_smooth.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_step.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_text.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_tile.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_vline.rd | 2
ggplot2-0.8.4/ggplot2/man/get-rev-ag.rd | 6
ggplot2-0.8.4/ggplot2/man/gg-apply-cc.rd | 4
ggplot2-0.8.4/ggplot2/man/ggdist-9n.rd | 4
ggplot2-0.8.4/ggplot2/man/ggname-40.rd | 4
ggplot2-0.8.4/ggplot2/man/ggorder-28.rd | 4
ggplot2-0.8.4/ggplot2/man/ggplot-build-jd.rd | 4
ggplot2-0.8.4/ggplot2/man/ggplot-data-frame-d3.rd | 4
ggplot2-0.8.4/ggplot2/man/ggplot-dk.rd | 4
ggplot2-0.8.4/ggplot2/man/ggplot-oz.rd | 2
ggplot2-0.8.4/ggplot2/man/ggplotGrob-1l.rd | 2
ggplot2-0.8.4/ggplot2/man/ggsave-ao.rd | 4
ggplot2-0.8.4/ggplot2/man/ggstrip-6v.rd | 4
ggplot2-0.8.4/ggplot2/man/ggstructure-3r.rd | 2
ggplot2-0.8.4/ggplot2/man/grobColWidth-5r.rd | 4
ggplot2-0.8.4/ggplot2/man/grobGrid-67.rd | 4
ggplot2-0.8.4/ggplot2/man/grobMatrix-hq.rd | 4
ggplot2-0.8.4/ggplot2/man/grobRowHeight-co.rd | 4
ggplot2-0.8.4/ggplot2/man/guide-axis-vo.rd | 4
ggplot2-0.8.4/ggplot2/man/guide-grid-fu.rd | 4
ggplot2-0.8.4/ggplot2/man/guide-legends-3p.rd | 2
ggplot2-0.8.4/ggplot2/man/guide-legends-box-m7.rd | 2
ggplot2-0.8.4/ggplot2/man/hexBin-qp.rd | 4
ggplot2-0.8.4/ggplot2/man/hexGrob-tw.rd | 4
ggplot2-0.8.4/ggplot2/man/html-auto-link-u2.rd | 4
ggplot2-0.8.4/ggplot2/man/html-autolink-index-tk.rd | 6
ggplot2-0.8.4/ggplot2/man/html-index-create-g5.rd | 4
ggplot2-0.8.4/ggplot2/man/html-index-n5.rd | 6
ggplot2-0.8.4/ggplot2/man/html-linked-list-g6.rd | 4
ggplot2-0.8.4/ggplot2/man/html-template-create-9f.rd | 4
ggplot2-0.8.4/ggplot2/man/html-template-create-all-ge.rd | 4
ggplot2-0.8.4/ggplot2/man/html-template-p6.rd | 4
ggplot2-0.8.4/ggplot2/man/ignore.rd | 11 -
ggplot2-0.8.4/ggplot2/man/inside-aj.rd | 4
ggplot2-0.8.4/ggplot2/man/interleave-70.rd | 4
ggplot2-0.8.4/ggplot2/man/invert-5p.rd | 4
ggplot2-0.8.4/ggplot2/man/is-calculated-aes-ki.rd | 4
ggplot2-0.8.4/ggplot2/man/is-constant-6i.rd | 2
ggplot2-0.8.4/ggplot2/man/is-integeric-72.rd | 2
ggplot2-0.8.4/ggplot2/man/is-position-aes-5l.rd | 4
ggplot2-0.8.4/ggplot2/man/label-both-cu.rd | 2
ggplot2-0.8.4/ggplot2/man/label-parsed-ov.rd | 2
ggplot2-0.8.4/ggplot2/man/label-value-9n.rd | 2
ggplot2-0.8.4/ggplot2/man/labs-df.rd | 2
ggplot2-0.8.4/ggplot2/man/last-plot-9d.rd | 6
ggplot2-0.8.4/ggplot2/man/limits-nu.rd | 2
ggplot2-0.8.4/ggplot2/man/map-data-ax.rd | 2
ggplot2-0.8.4/ggplot2/man/midwest.rd | 4
ggplot2-0.8.4/ggplot2/man/muted-5j.rd | 4
ggplot2-0.8.4/ggplot2/man/nice-ramp-fd.rd | 4
ggplot2-0.8.4/ggplot2/man/panelGrob-da.rd | 4
ggplot2-0.8.4/ggplot2/man/parse-unit-spec-ps.rd | 4
ggplot2-0.8.4/ggplot2/man/percent-8m.rd | 4
ggplot2-0.8.4/ggplot2/man/plot-theme-9b.rd | 4
ggplot2-0.8.4/ggplot2/man/plotmatrix-95.rd | 2
ggplot2-0.8.4/ggplot2/man/pos-dodge-6a.rd | 4
ggplot2-0.8.4/ggplot2/man/pos-fill-96.rd | 4
ggplot2-0.8.4/ggplot2/man/pos-stack-ev.rd | 4
ggplot2-0.8.4/ggplot2/man/precision-hd.rd | 4
ggplot2-0.8.4/ggplot2/man/predictdf-62.rd | 4
ggplot2-0.8.4/ggplot2/man/print-ggplot-0n.rd | 4
ggplot2-0.8.4/ggplot2/man/print-theme-55.rd | 4
ggplot2-0.8.4/ggplot2/man/ps-ie.rd | 4
ggplot2-0.8.4/ggplot2/man/rdoc-auto-link-g4.rd | 4
ggplot2-0.8.4/ggplot2/man/rdoc-from-html-55.rd | 2
ggplot2-0.8.4/ggplot2/man/rect-to-poly-24.rd | 4
ggplot2-0.8.4/ggplot2/man/rename-aes-ay.rd | 4
ggplot2-0.8.4/ggplot2/man/rescale-dp.rd | 4
ggplot2-0.8.4/ggplot2/man/safe-call-7b.rd | 2
ggplot2-0.8.4/ggplot2/man/same-file-xm.rd | 4
ggplot2-0.8.4/ggplot2/man/save-examples-zh.rd | 2
ggplot2-0.8.4/ggplot2/man/scale_datetime.rd | 10 +
ggplot2-0.8.4/ggplot2/man/scale_gradientn.rd | 4
ggplot2-0.8.4/ggplot2/man/scale_size.rd | 4
ggplot2-0.8.4/ggplot2/man/scales-list-3z.rd | 4
ggplot2-0.8.4/ggplot2/man/scientific-fz.rd | 4
ggplot2-0.8.4/ggplot2/man/set-default-scale-47.rd | 2
ggplot2-0.8.4/ggplot2/man/set-last-plot-8d.rd | 4
ggplot2-0.8.4/ggplot2/man/setup-viewports-58.rd | 4
ggplot2-0.8.4/ggplot2/man/stairstep-as.rd | 4
ggplot2-0.8.4/ggplot2/man/stat_bin.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_bin2d.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_binhex.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_boxplot.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_contour.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_density.rd | 9 -
ggplot2-0.8.4/ggplot2/man/stat_density2d.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_qq.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_quantile.rd | 4
ggplot2-0.8.4/ggplot2/man/stat_smooth.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_spoke.rd | 4
ggplot2-0.8.4/ggplot2/man/stat_sum.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_summary.rd | 2
ggplot2-0.8.4/ggplot2/man/strip-dots-g2.rd | 4
ggplot2-0.8.4/ggplot2/man/summarise-by-x-13.rd | 2
ggplot2-0.8.4/ggplot2/man/summary-ggplot-cv.rd | 2
ggplot2-0.8.4/ggplot2/man/surround-viewports-03.rd | 4
ggplot2-0.8.4/ggplot2/man/theme-blank-f4.rd | 6
ggplot2-0.8.4/ggplot2/man/theme-bw-pq.rd | 4
ggplot2-0.8.4/ggplot2/man/theme-gray-gw.rd | 4
ggplot2-0.8.4/ggplot2/man/theme-line-49.rd | 4
ggplot2-0.8.4/ggplot2/man/theme-rect-f3.rd | 2
ggplot2-0.8.4/ggplot2/man/theme-render-36.rd | 2
ggplot2-0.8.4/ggplot2/man/theme-segment-t0.rd | 4
ggplot2-0.8.4/ggplot2/man/theme-text-9a.rd | 4
ggplot2-0.8.4/ggplot2/man/time-breaks-om.rd | 4
ggplot2-0.8.4/ggplot2/man/to-date-og.rd | 4
ggplot2-0.8.4/ggplot2/man/to-time-1x.rd | 4
ggplot2-0.8.4/ggplot2/man/tr-o7.rd | 4
ggplot2-0.8.4/ggplot2/man/transform-position-w3.rd | 4
ggplot2-0.8.4/ggplot2/man/try-require-by.rd | 4
ggplot2-0.8.4/ggplot2/man/ulevels-qj.rd | 4
ggplot2-0.8.4/ggplot2/man/uniquecols-cf.rd | 4
ggplot2-0.8.4/ggplot2/man/update-geom-defaults-1v.rd | 2
ggplot2-0.8.4/ggplot2/man/update-labels-kd.rd | 2
ggplot2-0.8.4/ggplot2/man/update-stat-defaults-wc.rd | 4
ggplot2-0.8.4/ggplot2/man/vp-name-ea.rd | 2
ggplot2-0.8.4/ggplot2/man/vp-path-c6.rd | 2
ggplot2-0.8.4/ggplot2/man/wrap-hmisc-hc.rd | 4
ggplot2-0.8.4/ggplot2/man/xlim-db.rd | 2
ggplot2-0.8.4/ggplot2/man/ylim-ok.rd | 2
ggplot2-0.8.4/ggplot2/man/zeroGrob-i3.rd |only
249 files changed, 617 insertions(+), 480 deletions(-)
Author: CHARLOTTE MAIA
Title: Multivariate ECDF Based Models
Description: Univariate and multivariate ECDFs. This produces step
functions, methods for producing smooth(ish) distribution
functions are being considered.
Diff between mecdf versions 0.1.0 dated 2009-12-06 and 0.2.1 dated 2009-12-09
DESCRIPTION | 16 ++++++++-------- R/mecdf.r | 44 +++++++++++++++++++++++++------------------- R/plot.r |only inst/doc/Makefile |only inst/doc/maia.sty |only inst/doc/mecdf.pdf |only inst/doc/mecdf.rnw |only man/bcdf.plot.Rd |only man/mecdf.Rd | 4 ++-- 9 files changed, 35 insertions(+), 29 deletions(-)
Author: Patrick Mair, Reinhold Hatzinger
Title: Extended Rasch Modeling.
Description: eRm fits Rasch models (RM), linear logistic test models
(LLTM), rating scale model (RSM), linear rating scale models
(LRSM), partial credit models (PCM), and linear partial credit
models (LPCM). Missing values are allowed in the data matrix.
Additional features are the ML estimation of the person
parameters, Andersen's LR-test, item-specific Wald test,
itemfit and personfit statistics including infit and outfit
measures, various ICC and related plots, automated stepwise
item elimination, simulation module for various binary data
matrices. An eRm platform is provided at R-forge (see URL).
Diff between eRm versions 0.10-2 dated 2009-03-06 and 0.11-0 dated 2009-12-09
eRm-0.10-2/eRm/inst |only eRm-0.11-0/eRm/COPYRIGHTS | 20 ++++++++--------- eRm-0.11-0/eRm/DESCRIPTION | 37 ++++++++++++++++++++------------ eRm-0.11-0/eRm/NAMESPACE | 9 ++++++- eRm-0.11-0/eRm/R/NPtest.R |only eRm-0.11-0/eRm/R/ROCR_aux.R |only eRm-0.11-0/eRm/R/performance.R |only eRm-0.11-0/eRm/R/performance_measures.R |only eRm-0.11-0/eRm/R/performance_plots.R |only eRm-0.11-0/eRm/R/plot.ppar.r | 14 ++++++++---- eRm-0.11-0/eRm/R/plotCI.R |only eRm-0.11-0/eRm/R/plotPImap.R | 2 - eRm-0.11-0/eRm/R/prediction.R |only eRm-0.11-0/eRm/R/zzz.R |only eRm-0.11-0/eRm/man/NPtest.Rd |only eRm-0.11-0/eRm/man/eRm-package.Rd | 8 ++++-- 16 files changed, 58 insertions(+), 32 deletions(-)
Author: Rory Michelland
Diff between OligoSpecificitySystem versions 1.0 dated 2009-11-26 and 1.1 dated 2009-12-09
More information about OligoSpecificitySystem at CRAN
Title: Oligo Specificity System
Description: Calculate the theorical specificity of a system of
multiple primers used for PCR, qPCR primers or degenerated
primer design
DESCRIPTION | 8 ++++----
R/OSS.r | 36 ++++++++++++++++++++++--------------
R/concatenate.r | 5 +++--
R/dbb1.r | 16 +++++++++++-----
R/dbb2.r | 16 ++++++++++------
R/dbb3.r | 15 ++++++++++-----
R/dbb4.r | 41 +++++++++++++++++++----------------------
R/waitGUI.r |only
inst/doc/db1.txt | 1 -
man/OSS-internal.rd | 1 +
10 files changed, 80 insertions(+), 59 deletions(-)
Permanent link
Author: Felix Wittmann
Diff between HFWutils versions 0.9.1.2008.05.28 dated 2008-07-06 and 0.9.3.2009.12.07 dated 2009-12-09
Title: csv import, csv export, garbage collection,string matching and
passing by reference
Description: package containing functions for convenient csv import and
export with a view of using R as a calculation back end to
spreadsheet-like programs such as scalc in open office; string
matching and passing by reference
DESCRIPTION | 30 ++++++++++++++++++------------
man/Clean-methods.Rd | 4 ++--
man/cleanTexts.Rd | 21 ++++++---------------
3 files changed, 26 insertions(+), 29 deletions(-)
Author: Michael Morrissey
Title: Functions to facilitate power and sensitivity analyses for
genetic studies of natrual popualtions
Description: More to come
Diff between pedantics versions 1.0 dated 2009-10-29 and 1.01 dated 2009-12-09
DESCRIPTION | 6 - R/drawPedigree.R | 52 +++++++++++---- R/pedigreeStats.R | 172 ++++++++++++++++++++++++++++++++++++++++----------- man/drawPedigree.Rd | 3 man/pedigreeStats.Rd | 6 + 5 files changed, 186 insertions(+), 53 deletions(-)
Author: Andrew Gelman
Diff between mi versions 0.08-04.04 dated 2009-12-03 and 0.08-04.06 dated 2009-12-09
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
CHANGELOG | 4 ++++
DESCRIPTION | 8 ++++----
R/mi.binary.R | 4 ++--
R/mi.continuous.R | 6 +++---
R/mi.count.R | 5 ++---
R/mi.info.R | 14 ++++++++++++--
R/mi.polr.R | 4 +---
7 files changed, 28 insertions(+), 17 deletions(-)
Author: Dimitris Rizopoulos
Diff between ltm versions 0.9-2 dated 2009-10-12 and 0.9-3 dated 2009-12-09
Title: Latent Trait Models under IRT
Description: Analysis of multivariate dichotomous and polytomous data
using latent trait models under the Item Response Theory
approach. It includes the Rasch, the Two-Parameter Logistic,
the Birnbaum's Three-Parameter, the Graded Response, and the
Generalized Partial Credit Models.
DESCRIPTION | 8 ++++----
R/IRT.parm.rasch.R | 2 +-
R/fitted.ltm.R | 2 ++
R/fitted.rasch.R | 2 ++
R/fitted.tpm.R | 2 ++
R/onAttach.R | 2 +-
R/summary.grm.R | 6 ++++++
R/summary.ltm.R | 4 ++--
R/summary.tpm.R | 2 +-
data/Abortion.rda |binary
data/Environment.rda |binary
data/LSAT.rda |binary
data/Mobility.rda |binary
data/Science.rda |binary
data/WIRS.rda |binary
inst/NEWS | 7 +++++++
man/ltm-package.Rd | 4 ++--
17 files changed, 30 insertions(+), 11 deletions(-)
Author: Rob J Hyndman and Han Lin Shang
Title: Functional time series analysis
Description: Functions for functional time series
Diff between ftsa versions 1.1 dated 2009-10-08 and 1.2 dated 2009-12-09
CHANGELOG | 4 ++++ DESCRIPTION | 8 ++++---- NAMESPACE | 4 +++- R/extract.time.R | 20 ++++++++++++++++---- R/extract.x.R | 22 +++++++++++++++++----- R/fplsrweightselect.R |only R/ftsmweightselect.R |only man/extract.Rd | 2 +- man/fplsrweightselect.Rd |only man/ftsmweightselect.Rd |only 10 files changed, 45 insertions(+), 15 deletions(-)
Author: Han Lin Shang and Rob J Hyndman
Title: Functional data sets
Description: Functional data sets
Diff between fds versions 1.2 dated 2009-11-03 and 1.3 dated 2009-12-09
CHANGELOG | 6 +++++- DESCRIPTION | 8 ++++---- data/ECBYieldcurve.rda |only data/FedYieldcurve.rda |only data/SOI.rda |only man/ECBYieldcurve.Rd |only man/FedYieldcurve.Rd |only man/SOI.Rd |only 8 files changed, 9 insertions(+), 5 deletions(-)
Author: Felix Kaminsky
Diff between estout versions 0.8-1 dated 2009-11-15 and 0.9-1 dated 2009-12-09
Title: Estimates Output
Description: The function collection stores the estimates of several
models and formats it to a table of the form estimate starred
and std.err. below. The default output is LaTeX but output to
CSV for later editing in a spreadsheet tool is possible as
well. It works for linear models (lm) and panel models from the
"plm"-package (plm). The added "descsto" and "desctab" enable
you to export descriptive statistics of data-frames and single
variables to LaTeX and CSV.
DESCRIPTION | 6 +-
R/esttab.R | 117 ++++++++++++++++++++++++++++++++++++++++++++++------------
man/esttab.Rd | 6 ++
3 files changed, 101 insertions(+), 28 deletions(-)
Author: Mark Stevenson
Diff between epiR versions 0.9-19 dated 2009-08-10 and 0.9-22 dated 2009-12-09
Title: Functions for analysing epidemiological data
Description: A package for analysing epidemiological data. Contains
functions for directly and indirectly adjusting measures of
disease frequency, quantifying measures of association on the
basis of single or multiple strata of count data presented in a
contingency table, and computing confidence intervals around
incidence risk and incidence rate estimates. Miscellaneous
functions for use in meta-analysis, diagnostic test
interpretation, and sample size calculations.
DESCRIPTION | 8
R/epi.2by2.R | 2058 +++++++--------
R/epi.dms.R | 12
R/epi.dsl.R | 16
R/epi.iv.R | 15
R/epi.mh.R | 14
R/epi.prcc.R | 38
doc/epiR.pdf | 7619 +++++++++++++++++++++++++++-----------------------------
man/epi.2by2.Rd | 47
man/epi.dsl.Rd | 2
man/epi.iv.Rd | 2
man/epi.mh.Rd | 2
man/epi.prcc.Rd | 8
13 files changed, 4941 insertions(+), 4900 deletions(-)
Author: Andy Bunn
Title: Dendrochronology Program Library in R
Description: This package contains functions for performing some
standard tree-ring analyses.
Diff between dplR versions 1.2.1 dated 2009-12-02 and 1.2.2 dated 2009-12-09
DESCRIPTION | 8 ++++---- R/cms.R | 38 ++++++++++++++++++++++++++++++-------- inst/CITATION | 18 ++++++++++++++++++ man/cms.Rd | 18 +++++++++++++----- 4 files changed, 65 insertions(+), 17 deletions(-)
Author: Rolf Turner
Diff between deldir versions 0.0-10 dated 2009-11-16 and 0.0-11 dated 2009-12-09
Title: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation.
Description: Calculates the Delaunay triangulation and the Dirichlet or
Voronoi tessellation (with respect to the entire plane) of a
planar point set.
ChangeLog | 14 ++++++++++++++
DESCRIPTION | 8 ++++----
R/First.R | 2 +-
3 files changed, 19 insertions(+), 5 deletions(-)
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.30 dated 2009-11-09 and 4.31 dated 2009-12-09
caret-4.30/caret/R/makeCubistFiles.R |only caret-4.30/caret/inst/CHANGES |only caret-4.31/caret/DESCRIPTION | 12 ++++++---- caret-4.31/caret/NAMESPACE | 31 ++++++++++++++++++++++++++- caret-4.31/caret/R/rfe.R | 25 +++++++++++---------- caret-4.31/caret/R/selectByFilter.R |only caret-4.31/caret/inst/NEWS |only caret-4.31/caret/inst/doc/caretMisc.tex |only caret-4.31/caret/inst/doc/caretSelection.tex |only caret-4.31/caret/inst/doc/caretTrain.tex |only caret-4.31/caret/inst/doc/caretVarImp.tex |only caret-4.31/caret/man/nullModel.Rd |only caret-4.31/caret/man/rfeControl.Rd | 22 +++++++++---------- caret-4.31/caret/man/sbf.Rd |only caret-4.31/caret/man/sbfControl.Rd |only caret-4.31/caret/man/sbfFunctions.Rd |only 16 files changed, 61 insertions(+), 29 deletions(-)
Author: Sebastian Kaiser, Rodrigo Santamaria, Martin Sill, Roberto
Theron, Luis Quintales and Friedrich Leisch.
Title: BiCluster Algorithms
Description: The main function biclust provides several algorithms to
find biclusters in two-dimensional data: Cheng and Church,
Spectral, Plaid Model, Xmotifs and Bimax. In addition, the
package provides methods for data preprocessing (normalization
and discretisation), visualisation, and validation of bicluster
solutions.
Diff between biclust versions 0.8.1 dated 2009-05-07 and 0.9.1 dated 2009-12-09
DESCRIPTION | 15 ++--- NAMESPACE | 8 ++ NEWS | 2 R/aaa-biclust.r | 34 +++++++++++- R/bicorder.r |only R/bimax.r | 62 +++++++++++++++++++++- R/cc.r | 4 - R/clustmember.r | 135 +++++++++++++++++++++++++----------------------- R/jaccard.r | 28 +++++++++ R/parallelCoordinates.r | 32 +++++------ R/plaid.r | 28 ++++++++- R/predict.r |only R/questmetmotif.r |only R/questmotif.r | 4 - R/questordmotif.r |only R/spectral.r | 4 - R/xmotif.r | 4 - man/BCBimax.rd | 7 ++ man/BCQuest.rd | 15 ++++- man/Biclust.rd | 4 + man/BiclustMethod.rd | 4 - man/clustmember.rd | 40 ++++++++++---- man/coherence.Rd | 3 - man/discretize.rd | 3 - man/plotclust.rd | 2 man/predict.rd |only man/writeclust.rd | 4 - src/rbimax.c | 70 ++++++++++++------------ 28 files changed, 347 insertions(+), 165 deletions(-)
Author: Daniel Chessel, Anne-Beatrice Dufour
Diff between ade4 versions 1.4-13 dated 2009-11-03 and 1.4-14 dated 2009-12-09
Title: Analysis of Ecological Data : Exploratory and Euclidean methods
in Environmental sciences
Description: Multivariate data analysis and graphical display.
ChangeLog | 39 +++++++++
DESCRIPTION | 12 +-
R/betweencoinertia.R |only
R/costatis.R |only
R/plot.4thcorner.R | 39 ++++++---
R/s.match.class.R |only
R/statico.R |only
R/withincoinertia.R |only
man/area.plot.Rd | 7 -
man/betweencoinertia.Rd |only
man/costatis.Rd |only
man/dist.ktab.Rd | 9 +-
man/fourthcorner.Rd | 9 +-
man/neig.Rd | 6 -
man/oribatid.Rd | 4
man/s.match.class.Rd |only
man/statico.Rd |only
man/withincoinertia.Rd |only
man/woangers.Rd | 5 -
src/fourthcorner.c | 198 ++++++++++++++++++++++++++++++++++--------------
20 files changed, 234 insertions(+), 94 deletions(-)
Author: Jianqing Fan, Yang Feng, Richard Samworth, Yichao Wu
Title: Sure Independence Screening
Description: (Iterative) Sure Independence Screening for Generalized
Linear Models and Cox's Proportional Hazards Models
Diff between SIS versions 0.2 dated 2009-08-19 and 0.3 dated 2009-12-09
DESCRIPTION | 10 +++++----- man/COXvanISISscad.Rd | 1 + man/GLMvanISISscad.Rd | 1 + man/SIS.Rd | 1 + man/getfinalSCADcoef.Rd | 1 + man/getfinalSCADcoefCOX.Rd | 1 + man/scadcox.Rd | 1 + man/scadglm.Rd | 1 + man/wtlassocox.Rd | 1 + man/wtlassoglm.Rd | 1 + 10 files changed, 14 insertions(+), 5 deletions(-)
Author: Fabrice Colas
Title: Integrated methodology for the identification of homogeneous
profiles in data distribution
Description: Integrated set of tools and methods to identify
homogeneous profiles/subtypes in data distribution by cluster
analysis. It includes methods for data treatment and
pre-processing, repeated cluster analysis, model selection,
model reliability and reproducibility assessment, profiles
characterization and validation by visual and table summaries.
It applies particularly to the search for more homogeneous
profiles in cohort studies.
Diff between SDisc versions 1.17 dated 2009-11-05 and 1.18 dated 2009-12-09
DESCRIPTION | 10 - NAMESPACE | 2 R/SDisc.R | 477 ++++++++++++++++++++++++++++++------------------ inst |only man/SDData.Rd | 13 - man/SDDataSettings.Rd | 8 man/SDisc.Rd | 7 man/bestModel.Rd | 3 man/modelBasedEM.Rd | 4 man/plot.SDData.Rd | 10 - man/plot.SDStability.Rd | 3 man/plot.SDisc.Rd | 8 man/predict.SDData.Rd |only man/predict.SDisc.Rd | 6 man/print.SDCModel.Rd | 8 man/print.SDData.Rd | 6 man/print.SDisc.Rd | 3 man/print.bicTable.Rd | 3 man/summary.SDCModel.Rd | 4 man/summary.SDData.Rd | 10 - man/summary.SDisc.Rd | 7 man/summary.bicTable.Rd | 3 man/texTable.Rd | 8 man/write.SDisc.Rd | 4 24 files changed, 387 insertions(+), 220 deletions(-)
Author: Jon T. Schnute
Diff between PBSmodelling versions 2.51.168 dated 2009-11-25 and 2.55.175 dated 2009-12-09
Title: GUI Tools Made Easy: Interact with Models, Explore Data, Give
Dynamic Presentations
Description: PBS Modelling provides software to facilitate the design,
testing, and operation of computer models. It focuses
particularly on tools that make it easy to construct and edit a
customized graphical user interface (GUI). Although it depends
heavily on the R interface to the Tcl/Tk package, a user does
not need to know Tcl/Tk. The package contains examples that
illustrate models built with other R packages, including
PBSmapping, deSolve, PBSddesolve, and BRugs. It also serves as
a convenient prototype for building new R packages, along with
instructions and batch files to facilitate that process. The R
directory '.../library/PBSmodelling/doc' includes a complete
user guide PBSmodelling-UG.pdf. To use this package
effectively, please consult the guide.
DESCRIPTION | 8 ++++----
R/presentTalk.r | 40 ++++++++++++++++++++++++++++++----------
R/supportFuns.r | 9 +++++++++
inst/doc/ChangeLog.txt | 6 +++++-
inst/doc/DeveloperGuide.pdf |binary
inst/doc/PBSmodellingIntro.pdf |binary
inst/testWidgets/check.txt | 2 +-
man/openFile.Rd | 4 ++++
man/openUG.Rd |only
9 files changed, 53 insertions(+), 16 deletions(-)
Author: Jon T. Schnute, Rowan Haigh
Title: PBS ADMB
Description: R Support for ADMB (Automatic Differentiation Model
Builder)
Diff between PBSadmb versions 0.60.43 dated 2009-11-25 and 0.61.44 dated 2009-12-09
DESCRIPTION | 6 +++--- R/PBSadmb.r | 2 +- inst/doc/ChangeLog.txt | 4 ++++ 3 files changed, 8 insertions(+), 4 deletions(-)
Author: Andrew Parnell
Title: Bayesian chronologies via compound Poisson-Gamma processes.
Description: This package takes dating information to produce joint
chronological reconstructions for age-depth data. The package
allows for: radiocarbon and non-radiocarbon depths, thickness
errors, outlying dates, multiple calibration curves, and event
prediction. It also produces some pretty pictures, and writes
all output to files to allow for further analysis (eg
palaeoclimate reconstruction). There is a menu system for
users, as well as a command line interface for advanced and/or
batch processing.
Diff between Bchron versions 2.1 dated 2008-05-13 and 3.0 dated 2009-12-09
Bchron-2.1/Bchron/R/Bchronchangecalcurve.R |only Bchron-2.1/Bchron/R/Bchronloaddata.R |only Bchron-2.1/Bchron/R/Bchronplotdens.R |only Bchron-2.1/Bchron/R/Bchronplotter.R |only Bchron-2.1/Bchron/R/Bchronplotterdatesonly.r |only Bchron-2.1/Bchron/R/Bchronquickload.R |only Bchron-2.1/Bchron/R/BchronreadEPD.r |only Bchron-2.1/Bchron/data |only Bchron-2.1/Bchron/man/Bchronchangecalcurve.Rd |only Bchron-2.1/Bchron/man/Bchronloaddata.Rd |only Bchron-2.1/Bchron/man/Bchronplotdens.Rd |only Bchron-2.1/Bchron/man/Bchronplotter.Rd |only Bchron-2.1/Bchron/man/Bchronplotterdatesonly.Rd |only Bchron-2.1/Bchron/man/Bchronquickload.Rd |only Bchron-2.1/Bchron/man/BchronreadEPD.Rd |only Bchron-2.1/Bchron/man/GlendaloughEventDepthsAlnus.Rd |only Bchron-2.1/Bchron/man/Glendaloughddepths.Rd |only Bchron-2.1/Bchron/man/IntCal04.Rd |only Bchron-2.1/Bchron/man/hdr2.den.Rd |only Bchron-3.0/Bchron/DESCRIPTION | 33 +- Bchron-3.0/Bchron/NAMESPACE | 9 Bchron-3.0/Bchron/R/BchronMCMC.R | 137 +++----- Bchron-3.0/Bchron/R/Bchroncalibrate.R | 80 +--- Bchron-3.0/Bchron/R/Bchroncheck.R | 84 +---- Bchron-3.0/Bchron/R/Bchronconvergecheck.R | 42 -- Bchron-3.0/Bchron/R/Bchroncreatecalcurve.R |only Bchron-3.0/Bchron/R/Bchronload.R |only Bchron-3.0/Bchron/R/Bchronmenu.R | 312 +++++++++++-------- Bchron-3.0/Bchron/R/Bchronplot.R |only Bchron-3.0/Bchron/R/Bchronplotevent.R | 97 ++++- Bchron-3.0/Bchron/R/Bchronpredict.R | 88 ++--- Bchron-3.0/Bchron/R/Bchronpredictevent.R | 142 ++------ Bchron-3.0/Bchron/R/Bchronproxyplot.R |only Bchron-3.0/Bchron/R/hdr2.den.R | 1 Bchron-3.0/Bchron/R/newgraphwindow.R | 8 Bchron-3.0/Bchron/R/zzz.R |only Bchron-3.0/Bchron/inst |only Bchron-3.0/Bchron/man/Bchron-package.Rd | 188 +++++------ Bchron-3.0/Bchron/man/BchronMCMC.Rd | 62 ++- Bchron-3.0/Bchron/man/Bchroncalibrate.Rd | 52 ++- Bchron-3.0/Bchron/man/Bchroncheck.Rd | 26 + Bchron-3.0/Bchron/man/Bchronconvergecheck.Rd | 38 +- Bchron-3.0/Bchron/man/Bchroncreatecalcurve.Rd |only Bchron-3.0/Bchron/man/Bchronload.Rd |only Bchron-3.0/Bchron/man/Bchronmenu.Rd | 38 +- Bchron-3.0/Bchron/man/Bchronplot.Rd |only Bchron-3.0/Bchron/man/Bchronplotevent.Rd | 59 +++ Bchron-3.0/Bchron/man/Bchronpredict.Rd | 44 ++ Bchron-3.0/Bchron/man/Bchronpredictevent.Rd | 52 ++- Bchron-3.0/Bchron/man/Bchronproxyplot.Rd |only Bchron-3.0/Bchron/man/newgraphwindow.Rd | 15 Bchron-3.0/Bchron/src/CPGv2.c | 69 +--- Bchron-3.0/Bchron/src/calibrate.c | 62 --- Bchron-3.0/Bchron/src/predict.c | 103 +----- Bchron-3.0/Bchron/src/predictrand.c | 69 +--- 55 files changed, 928 insertions(+), 982 deletions(-)