Author: Yohan Chalabi, Christophe Dutang, Petr Savicky and Diethelm
Wuertz (except underlying C codes of (i) the SFMT algorithm
from M. Matsumoto and M. Saito, (ii) the Knuth-TAOCP RNG from
D. Knuth). See LICENCE file for details.
Title: toolbox for pseudo and quasi random number generation and RNG
tests.
Description: The package provides (1) pseudo random generators -
general linear congruential generators (Park Miller) and
multiple recursive generators (Knuth TAOCP), generalized
feedback shift register (SF-Mersenne Twister algorithm and WELL
generators); (2) quasi random generators - the Torus algorithm,
the Sobol sequence, the Halton sequence (thus include Van der
Corput sequence) and (3) some additional tests such as the gap
test, the serial test, the poker test... For true random number
generation, use the 'random' package, for Latin Hypercube
Sampling (a hybrid qmc method), use the 'lhs' package, a number
of RNGs and tests for RNGs are provided by 'RDieHarder', all
available on CRAN. There is also a small stand-alone package
'rngwell19937' for the WELL19937a RNG.
Diff between randtoolbox versions 1.07 dated 2009-02-15 and 1.09 dated 2009-12-11
randtoolbox-1.07/randtoolbox/inst/doc/Sweave.sh |only randtoolbox-1.07/randtoolbox/src/WELL1024a.c |only randtoolbox-1.07/randtoolbox/src/WELL1024a.h |only randtoolbox-1.07/randtoolbox/src/WELL1024b.c |only randtoolbox-1.07/randtoolbox/src/WELL1024b.h |only randtoolbox-1.07/randtoolbox/src/WELL19937a.c |only randtoolbox-1.07/randtoolbox/src/WELL19937a.h |only randtoolbox-1.07/randtoolbox/src/WELL19937aTemp.c |only randtoolbox-1.07/randtoolbox/src/WELL19937aTemp.h |only randtoolbox-1.07/randtoolbox/src/WELL19937b.c |only randtoolbox-1.07/randtoolbox/src/WELL19937b.h |only randtoolbox-1.07/randtoolbox/src/WELL19937bTemp.c |only randtoolbox-1.07/randtoolbox/src/WELL19937bTemp.h |only randtoolbox-1.07/randtoolbox/src/WELL21701a.c |only randtoolbox-1.07/randtoolbox/src/WELL21701a.h |only randtoolbox-1.07/randtoolbox/src/WELL21701aTemp.c |only randtoolbox-1.07/randtoolbox/src/WELL21701aTemp.h |only randtoolbox-1.07/randtoolbox/src/WELL23209a.c |only randtoolbox-1.07/randtoolbox/src/WELL23209a.h |only randtoolbox-1.07/randtoolbox/src/WELL23209aTemp.c |only randtoolbox-1.07/randtoolbox/src/WELL23209aTemp.h |only randtoolbox-1.07/randtoolbox/src/WELL23209b.c |only randtoolbox-1.07/randtoolbox/src/WELL23209b.h |only randtoolbox-1.07/randtoolbox/src/WELL23209bTemp.c |only randtoolbox-1.07/randtoolbox/src/WELL23209bTemp.h |only randtoolbox-1.07/randtoolbox/src/WELL44497a.c |only randtoolbox-1.07/randtoolbox/src/WELL44497a.h |only randtoolbox-1.07/randtoolbox/src/WELL44497aTemp.c |only randtoolbox-1.07/randtoolbox/src/WELL44497aTemp.h |only randtoolbox-1.07/randtoolbox/src/WELL512a.c |only randtoolbox-1.07/randtoolbox/src/WELL512a.h |only randtoolbox-1.07/randtoolbox/src/WELL521a.c |only randtoolbox-1.07/randtoolbox/src/WELL521a.h |only randtoolbox-1.07/randtoolbox/src/WELL521b.c |only randtoolbox-1.07/randtoolbox/src/WELL521b.h |only randtoolbox-1.07/randtoolbox/src/WELL607a.c |only randtoolbox-1.07/randtoolbox/src/WELL607a.h |only randtoolbox-1.07/randtoolbox/src/WELL607b.c |only randtoolbox-1.07/randtoolbox/src/WELL607b.h |only randtoolbox-1.07/randtoolbox/src/WELL800a.c |only randtoolbox-1.07/randtoolbox/src/WELL800a.h |only randtoolbox-1.07/randtoolbox/src/WELL800aTemp.c |only randtoolbox-1.07/randtoolbox/src/WELL800aTemp.h |only randtoolbox-1.07/randtoolbox/src/WELL800b.c |only randtoolbox-1.07/randtoolbox/src/WELL800b.h |only randtoolbox-1.07/randtoolbox/src/WELL800bTemp.c |only randtoolbox-1.07/randtoolbox/src/WELL800bTemp.h |only randtoolbox-1.09/randtoolbox/DESCRIPTION | 38 randtoolbox-1.09/randtoolbox/LICENCE | 46 randtoolbox-1.09/randtoolbox/NAMESPACE | 21 randtoolbox-1.09/randtoolbox/R/pseudoRNG.R | 64 randtoolbox-1.09/randtoolbox/R/qmc.R | 201 randtoolbox-1.09/randtoolbox/R/quasiRNG.R | 137 randtoolbox-1.09/randtoolbox/R/randtoolboxEnv.R | 61 randtoolbox-1.09/randtoolbox/R/runifInterface.R |only randtoolbox-1.09/randtoolbox/R/testRNG.R | 61 randtoolbox-1.09/randtoolbox/R/trueRNG.R |only randtoolbox-1.09/randtoolbox/R/version.R |only randtoolbox-1.09/randtoolbox/R/zzz.R |only randtoolbox-1.09/randtoolbox/configure | 838 randtoolbox-1.09/randtoolbox/configure.ac | 4 randtoolbox-1.09/randtoolbox/inst/NEWS | 68 randtoolbox-1.09/randtoolbox/inst/doc/DOC1e5.pdf | 1467 randtoolbox-1.09/randtoolbox/inst/doc/Makefile | 11 randtoolbox-1.09/randtoolbox/inst/doc/randtoolbox.Rnw | 1673 - randtoolbox-1.09/randtoolbox/inst/doc/randtoolbox.bib | 132 randtoolbox-1.09/randtoolbox/inst/doc/randtoolbox.pdf |28928 +++++++++++++----- randtoolbox-1.09/randtoolbox/inst/doc/src |only randtoolbox-1.09/randtoolbox/inst/doc/vanilla.pdf |binary randtoolbox-1.09/randtoolbox/man/colltest.Rd | 2 randtoolbox-1.09/randtoolbox/man/freqtest.Rd | 2 randtoolbox-1.09/randtoolbox/man/gaptest.Rd | 2 randtoolbox-1.09/randtoolbox/man/get.primes.Rd |only randtoolbox-1.09/randtoolbox/man/ordertest.Rd | 2 randtoolbox-1.09/randtoolbox/man/overall-doc.Rd |only randtoolbox-1.09/randtoolbox/man/pokertest.Rd | 2 randtoolbox-1.09/randtoolbox/man/pseudoRNG.Rd | 14 randtoolbox-1.09/randtoolbox/man/quasiRNG.Rd | 25 randtoolbox-1.09/randtoolbox/man/runifInterface.Rd |only randtoolbox-1.09/randtoolbox/man/serialtest.Rd | 2 randtoolbox-1.09/randtoolbox/src/LowDiscrepancy.f | 209 randtoolbox-1.09/randtoolbox/src/SFMT-sse2.h | 62 randtoolbox-1.09/randtoolbox/src/config.h | 4 randtoolbox-1.09/randtoolbox/src/congruRand.c |only randtoolbox-1.09/randtoolbox/src/congruRand.h |only randtoolbox-1.09/randtoolbox/src/init.c | 79 randtoolbox-1.09/randtoolbox/src/locale.h | 64 randtoolbox-1.09/randtoolbox/src/primes.h |only randtoolbox-1.09/randtoolbox/src/randtoolbox.c |13022 -------- randtoolbox-1.09/randtoolbox/src/randtoolbox.h | 106 randtoolbox-1.09/randtoolbox/src/runifInterface.c |only randtoolbox-1.09/randtoolbox/src/runifInterface.h |only randtoolbox-1.09/randtoolbox/src/testrng.c | 62 randtoolbox-1.09/randtoolbox/src/testrng.h | 62 randtoolbox-1.09/randtoolbox/src/version.c |only randtoolbox-1.09/randtoolbox/src/wellrng.h |only 96 files changed, 23463 insertions(+), 24008 deletions(-)
Author: Bob Wheeler
Diff between SuppDists versions 1.1-6 dated 2009-09-30 and 1.1-8 dated 2009-12-11
Title: Supplementary distributions
Description: Ten distributions supplementing those built into R.
Inverse Gauss, Kruskal-Wallis, Kendall's Tau, Friedman's chi
squared, Spearman's rho, maximum F ratio, the Pearson product
moment correlation coefficiant, Johnson distributions, normal
scores and generalized hypergeometric distributions. In
addition two random number generators of George Marsaglia are
included.
DESCRIPTION | 8 ++++----
src/dists.cc | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)
Author: Douglas Bates
Diff between Matrix versions 0.999375-32 dated 2009-11-22 and 0.999375-33 dated 2009-12-11
Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
ChangeLog | 33 ++
DESCRIPTION | 9
Done | 1
R/Auxiliaries.R | 3
R/Ops.R | 118 ++++++--
R/not.R | 4
R/spModels.R | 2
R/sparseVector.R | 22 +
TODO | 1
inst/doc/Comparisons.pdf |binary
inst/doc/Design-issues.pdf |binary
inst/doc/Intro2Matrix.pdf | 622 +++++++++++++++++++++-----------------------
inst/doc/Introduction.pdf |binary
inst/doc/sparseModels.pdf |binary
inst/include/Matrix_stubs.c | 9
inst/test-tools.R | 12
man/chol.Rd | 17 -
man/sparseVector-class.Rd | 16 +
tests/group-methods.R | 29 +-
tests/indexing.R | 21 +
tests/indexing.Rout.save | 17 -
21 files changed, 557 insertions(+), 379 deletions(-)
Author: Klaus Nordhausen, Jyrki Mottonen, Hannu Oja
Title: Multivariate Nonparametric Methods. An Approach Based on Spatial
Signs and Ranks
Description: The package provides multivariate tests, estimates and
methods based on the identity score, spatial sign score and
spatial rank score. The methods include one and c-sample
problems, shape estimation and testing, linear regression and
principal components.
Diff between MNM versions 0.95-0 dated 2009-11-09 and 0.95-1 dated 2009-12-11
DESCRIPTION | 8 +- R/mv.2way.estInternal.R | 133 ++++++++++++++++++++++++++++++------------------ R/plotMvloc.R | 16 ++--- R/plotShape.R | 14 ++--- inst |only man/MNM-package.Rd | 4 - man/mv.2way.est.Rd | 14 ++--- man/plotMvloc.Rd | 11 ++- man/plotShape.Rd | 8 ++ 9 files changed, 126 insertions(+), 82 deletions(-)
Author: Mark S. Handcock
Diff between statnet versions 2.1 dated 2008-05-02 and 2.1-1 dated 2009-12-11
Title: Software tools for the Statistical Modeling of Network Data
Description: An integrated set of tools for the representation,
visualization, analysis and simulation of network data. For an
introduction type: help(package='statnet')
statnet-2.1-1/statnet/DESCRIPTION | 32 ++++++++++--------
statnet-2.1-1/statnet/LICENSE | 8 ++--
statnet-2.1-1/statnet/R/update.statnet.R | 16 ++++-----
statnet-2.1-1/statnet/R/zzz.R | 9 ++---
statnet-2.1-1/statnet/inst/CITATION | 9 ++---
statnet-2.1-1/statnet/man/statnet-package.Rd | 47 +++++++++++++--------------
statnet-2.1-1/statnet/man/update_statnet.Rd |only
statnet-2.1/statnet/inst/CITATION.1 |only
statnet-2.1/statnet/inst/aaa |only
statnet-2.1/statnet/man/update.statnet.Rd |only
10 files changed, 66 insertions(+), 55 deletions(-)
Author: Patrick Giraudoux
Diff between pgirmess versions 1.4.2 dated 2009-11-13 and 1.4.3 dated 2009-12-11
Title: Data analysis in ecology
Description: Miscellaneous functions for analysis and display of
ecological and spatial data
DESCRIPTION | 8 ++++----
R/gps2gpx.r | 20 ++++++++++++++------
R/shannon.R | 20 ++++++++++----------
man/shannon.Rd | 2 +-
man/writeGPX.rd | 14 +++++++-------
5 files changed, 36 insertions(+), 28 deletions(-)
Author: Andrew Gelman
Diff between arm versions 1.2-10 dated 2009-11-23 and 1.2-11.02 dated 2009-12-11
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Description: R functions for processing lm, glm, mer and polr outputs.
CHANGELOG | 4 ++
DESCRIPTION | 10 +++----
NAMESPACE | 9 ++++++
R/sim.R | 78 ++++++++++++++++++++++++++++-----------------------------
R/simmer.R |only
man/display.Rd | 29 ++++++++-------------
man/sim.Rd | 6 ----
7 files changed, 70 insertions(+), 66 deletions(-)
Author: Fabrice Colas
Title: Integrated methodology for the identification of homogeneous
profiles in data distribution
Description: Integrated set of tools and methods to identify
homogeneous profiles/subtypes in data distribution by cluster
analysis. It includes methods for data treatment and
pre-processing, repeated cluster analysis, model selection,
model reliability and reproducibility assessment, profiles
characterization and validation by visual and table summaries.
It applies particularly to the search for more homogeneous
profiles in cohort studies.
Diff between SDisc versions 1.18 dated 2009-12-09 and 1.19 dated 2009-12-11
SDisc-1.18/SDisc/inst/doc/LMPredicted |only SDisc-1.18/SDisc/inst/doc/OrchardSprays |only SDisc-1.18/SDisc/inst/doc/SDDataBasic |only SDisc-1.18/SDisc/inst/doc/SDDataCenter |only SDisc-1.18/SDisc/inst/doc/SDDataLinearModel |only SDisc-1.18/SDisc/inst/doc/iris |only SDisc-1.18/SDisc/inst/doc/state/figures/MM-VII,4,6015.pdf |only SDisc-1.18/SDisc/inst/doc/state/figures/oddGroup-001-BB.pdf |only SDisc-1.18/SDisc/inst/doc/state/figures/oddGroup-001-H.pdf |only SDisc-1.18/SDisc/inst/doc/state/figures/oddGroup-002-BB.pdf |only SDisc-1.18/SDisc/inst/doc/state/figures/oddGroup-002-H.pdf |only SDisc-1.18/SDisc/inst/doc/state/tables/MM-VII,4,6013.csv |only SDisc-1.18/SDisc/inst/doc/state/tables/MM-VII,5,6014.csv |only SDisc-1.18/SDisc/inst/doc/state/tables/MM-VII,5,6015.csv |only SDisc-1.19/SDisc/DESCRIPTION | 10 SDisc-1.19/SDisc/R/SDisc.R | 14 SDisc-1.19/SDisc/inst/doc/Mixt3 |only SDisc-1.19/SDisc/inst/doc/Normdep |only SDisc-1.19/SDisc/inst/doc/NormdepPredicted |only SDisc-1.19/SDisc/inst/doc/SDisc-vignette.Snw | 583 SDisc-1.19/SDisc/inst/doc/SDisc-vignette.pdf |21073 +++++++----- SDisc-1.19/SDisc/inst/doc/SDisc.sty |only SDisc-1.19/SDisc/inst/doc/cran.pdf |only SDisc-1.19/SDisc/inst/doc/figures/scenario.pdf |binary SDisc-1.19/SDisc/inst/doc/mapLatlong.pdf |only SDisc-1.19/SDisc/inst/doc/osprays |only SDisc-1.19/SDisc/inst/doc/state.csv |only SDisc-1.19/SDisc/inst/doc/state/IMAGE.RData |binary SDisc-1.19/SDisc/inst/doc/state/figures/MM-VVI,4,6022.pdf |only SDisc-1.19/SDisc/inst/doc/state/tables/MM-VII,4,6014.csv | 88 SDisc-1.19/SDisc/inst/doc/state/tables/MM-VII,4,6015.csv | 82 SDisc-1.19/SDisc/inst/doc/state/tables/MM-VII,4,6023.csv |only SDisc-1.19/SDisc/inst/doc/state/tables/MM-VVI,4,6017.csv |only SDisc-1.19/SDisc/inst/doc/state/tables/MM-VVI,4,6022.csv |only 34 files changed, 13360 insertions(+), 8490 deletions(-)