Sun, 13 Dec 2009

Package timeSeries updated to version 2110.86 with previous version 2110.85 dated 2009-12-10

Author: Diethelm Wuertz and Yohan Chalabi
Title: Rmetrics - Financial Time Series Objects
Description: Environment for teaching "Financial Engineering and Computational Finance"

Diff between timeSeries versions 2110.85 dated 2009-12-10 and 2110.86 dated 2009-12-13

 ChangeLog          |   22 ++++++++++++++++++++++
 DESCRIPTION        |    8 ++++----
 man/base-subset.Rd |    4 ++++
 3 files changed, 30 insertions(+), 4 deletions(-)

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Package subselect updated to version 0.10-1 with previous version 0.9-9993 dated 2009-01-05

Author: Jorge Orestes Cerdeira Pedro Duarte Silva Jorge Cadima Manuel Minhoto
Title: Selecting variable subsets
Description: A collection of functions which (i) assess the quality of variable subsets as surrogates for a full data set, in either an exploratory data analysis or in the context of a multivariate linear model, and (ii) search for subsets which are optimal under various criteria.

Diff between subselect versions 0.9-9993 dated 2009-01-05 and 0.10-1 dated 2009-12-13

 DESCRIPTION        |   23 +++++---
 R/anneal.R         |   33 +++++++++---
 R/ccr12.R          |   20 +++----
 R/createHmat.R     |   26 ++++++++-
 R/genetic.R        |   40 ++++++++++++--
 R/improve.R        |   34 +++++++++---
 R/leaps.R          |   51 +++++++++++++-----
 R/tau2.R           |   18 +++---
 R/validation.R     |    5 +
 R/validnovcrit.R   |   45 ++++++++--------
 R/wald.R           |only
 R/xi2.R            |   20 +++----
 R/zeta2.R          |   20 +++----
 inst/CHANGELOG     |   25 +++++++++
 man/anneal.Rd      |  137 ++++++++++++++++++++++++++++++--------------------
 man/ccr12.Rd       |   15 +----
 man/genetic.Rd     |   75 ++++++++++++---------------
 man/glmHmat.Rd     |only
 man/improve.Rd     |  122 +++++++++++++++++++++++++++-----------------
 man/leaps.Rd       |  145 +++++++++++++++++++++++++++++++++--------------------
 man/tau2.Rd        |   15 +----
 man/wald.Rd        |only
 man/xi2.Rd         |   19 ++----
 man/zeta2.Rd       |   16 ++---
 src/CCRcrt.cpp     |   12 ++--
 src/CCRcrt.h       |    8 +-
 src/GCDcrt.cpp     |   20 +++----
 src/GCDcrt.h       |    8 +-
 src/MStcrt.cpp     |   18 +++---
 src/MStcrt.h       |    8 +-
 src/Qforms.cpp     |    8 +-
 src/Qforms.h       |    4 -
 src/RMcrt.cpp      |   32 +++++------
 src/RMcrt.h        |   12 ++--
 src/RVcrt.cpp      |   32 +++++------
 src/RVcrt.h        |   12 ++--
 src/Rnk3CCRcrt.cpp |   10 +--
 src/Rnk3CCRcrt.h   |    4 -
 src/SR_intf.cpp    |   13 ++--
 src/Sscma.cpp      |    6 +-
 src/VSQforms.cpp   |   24 ++++----
 src/VSQforms.h     |   10 +--
 src/Varsmbo.cpp    |    8 +-
 src/Vsmabo.h       |   10 +--
 src/Wrkf1.cpp      |   23 +++++---
 45 files changed, 704 insertions(+), 482 deletions(-)

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Package parser updated to version 0.0-7 with previous version 0.0-6 dated 2009-12-13

Author: Romain Francois
Title: Detailed R source code parser
Description: detailed source code parser, based on the standard R parser but organizing the information differently

Diff between parser versions 0.0-6 dated 2009-12-13 and 0.0-7 dated 2009-12-13

 DESCRIPTION           |    8 ++++----
 inst/include          |only
 man/parser-package.Rd |    4 ++--
 3 files changed, 6 insertions(+), 6 deletions(-)

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Package tcltk2 updated to version 1.1-1 with previous version 1.1-0 dated 2009-07-03

Author: Philippe Grosjean
Title: Tcl/Tk Additions
Description: A series of additional Tcl commands and Tk widgets with style and various functions (under Windows: DDE exchange, access to the registry and icon manipulation) to supplement the tcltk package

Diff between tcltk2 versions 1.1-0 dated 2009-07-03 and 1.1-1 dated 2009-12-13

 DESCRIPTION         |   17 ++++++++------
 NEWS                |   47 ++++++++++++++++++++++++++---------------
 R/tcltk2-Internal.R |   24 +++++++++++++++++++++
 TODO                |   59 ++++++++++++++++++++++++----------------------------
 inst/CITATION       |   25 +++++++++++-----------
 5 files changed, 105 insertions(+), 67 deletions(-)

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Package parser updated to version 0.0-6 with previous version 0.0-5 dated 2009-11-22

Author: Romain Francois
Title: Detailed R source code parser
Description: detailed source code parser, based on the standard R parser but organizing the information differently

Diff between parser versions 0.0-5 dated 2009-11-22 and 0.0-6 dated 2009-12-13

 parser-0.0-5/parser/inst/include          |only
 parser-0.0-6/parser/DESCRIPTION           |    8 -
 parser-0.0-6/parser/NEWS                  |    7 -
 parser-0.0-6/parser/R/parser.R            |   14 +-
 parser-0.0-6/parser/inst/grammar/gram.y   |    2 
 parser-0.0-6/parser/man/parser-package.Rd |    4 
 parser-0.0-6/parser/src/Makevars          |only
 parser-0.0-6/parser/src/files.c           |    2 
 parser-0.0-6/parser/src/gram.c            |  190 +++++++++++++++---------------
 parser-0.0-6/parser/src/io.c              |    2 
 parser-0.0-6/parser/src/parser.h          |only
 parser-0.0-6/parser/src/stretchyList.c    |    2 
 parser-0.0-6/parser/src/tokens.c          |    2 
 13 files changed, 123 insertions(+), 110 deletions(-)

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Package fossil updated to version 0.2.3 with previous version 0.2.2 dated 2009-11-26

Author: Matthew Vavrek
Title: Palaeoecological and Palaeogeographical Analysis Tools
Description: A set of analytical tools useful in analysing ecological and geographical data sets, both ancient and modern. The package includes functions for estimating species richness (Chao 1 and 2, ACE, ICE, Jacknife), shared species/beta diversity, species area curves and geographic distances and areas.

Diff between fossil versions 0.2.2 dated 2009-11-26 and 0.2.3 dated 2009-12-13

 DESCRIPTION  |    6 +-
 R/sorenson.R |   12 ++---
 R/spp.est.R  |  123 ++++++++++++++++++++++++++++++++---------------------------
 3 files changed, 76 insertions(+), 65 deletions(-)

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Package crawl updated to version 1.1-0 with previous version 1.0-4 dated 2009-05-06

Author: Devin S. Johnson
Title: Fit continuous-time correlated random walk models for animal movement data
Description: The (C)orrelated (RA)ndom (W)alk (L)ibrary of R functions was designed for fitting continuous-time correlated random walk (CTCRW) models with time indexed covariates. The model is fit using the Kalman-Filter on a state space version of the continuous-time staochistic movement process.

Diff between crawl versions 1.0-4 dated 2009-05-06 and 1.1-0 dated 2009-12-13

 .project                 |only
 DESCRIPTION              |   10 ++--
 R/crawl-internal.R       |   24 +++++++++
 R/crwMLE.R               |   40 +++++++++++-----
 R/crwN2ll.R              |   71 +++++++++++++++--------------
 R/crwPostIS.R            |only
 R/crwPredict.R           |  115 ++++++++++++++++++++++++++++-------------------
 R/crwSamplePar.R         |only
 R/crwSimulator.R         |only
 R/getQ.R                 |only
 R/zzz.R                  |    7 ++
 man/crawl-internal.Rd    |    9 +++
 man/crawl-package.Rd     |    7 +-
 man/crwMLE.Rd            |   14 +++--
 man/crwN2ll.Rd           |    1 
 man/crwPostIS.Rd         |only
 man/crwPredict.Rd        |   20 +++++---
 man/crwSamplePar.Rd      |only
 man/crwSimulator.Rd      |only
 man/northernFurSeal.Rd   |   31 +++++++++++-
 src/crwDriftN2ll.f90     |   26 +++++-----
 src/crwDriftPredict.f90  |   55 +++++++++++++---------
 src/crwDriftSimulate.f90 |only
 src/crwN2ll.f90          |   20 ++++----
 src/crwPredict.f90       |   48 +++++++++++--------
 src/crwSimulate.f90      |only
 26 files changed, 315 insertions(+), 183 deletions(-)

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Package countrycode updated to version 0.3 with previous version 0.2 dated 2009-06-14

Author: Vincent Arel-Bundock
Title: Create and manipulate data frames that contain country names or country coding schemes
Description: Standardizes country names, converts them into one of seven coding schemes, assigns region descriptors, and generates empty dyadic or country-year dataframes from the coding schemes.

Diff between countrycode versions 0.2 dated 2009-06-14 and 0.3 dated 2009-12-13

 DESCRIPTION                |    8 +++---
 R/countrycode.R            |   54 +++++++++++++++++++++------------------------
 man/countrycode-package.Rd |    4 +--
 3 files changed, 32 insertions(+), 34 deletions(-)

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Package caMassClass updated to version 1.8 with previous version 1.7 dated 2009-10-11

Author: Jarek Tuszynski
Title: Processing & Classification of Protein Mass Spectra (SELDI) Data
Description: Functions for processing and classification of protein mass spectra (SELDI) data. Also includes support for mzXML Files.

Diff between caMassClass versions 1.7 dated 2009-10-11 and 1.8 dated 2009-12-13

 CHANGES                    |    4 +++-
 DESCRIPTION                |    8 ++++----
 R/msc.baseline.subtract.R  |    4 ++--
 R/msc.biomarkers.IO.csv.R  |    4 ++--
 R/msc.biomarkers.fill.R    |    4 ++--
 R/msc.classifier.run.R     |    4 ++--
 R/msc.classifier.test.R    |    4 ++--
 R/msc.copies.merge.R       |    4 ++--
 R/msc.features.remove.R    |    4 ++--
 R/msc.features.scale.R     |    4 ++--
 R/msc.features.select.R    |    4 ++--
 R/msc.mass.adjust.R        |    4 ++--
 R/msc.mass.cut.R           |    4 ++--
 R/msc.peaks.IO.csv.R       |    4 ++--
 R/msc.peaks.IO.mzXML.R     |    4 ++--
 R/msc.peaks.align.R        |    4 ++--
 R/msc.peaks.clust.R        |    4 ++--
 R/msc.peaks.find.R         |    4 ++--
 R/msc.preprocess.run.R     |    4 ++--
 R/msc.project.read.R       |    4 ++--
 R/msc.project.run.R        |    6 ++++++
 R/msc.rawMS.IO.csv.R       |    5 ++---
 R/msc.rawMS.IO.mzXML.R     |    5 ++---
 R/msc.sample.correlation.R |    4 ++--
 R/mzXML.R                  |   15 ++++++++-------
 25 files changed, 63 insertions(+), 56 deletions(-)

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Package bibtex updated to version 0.1-2 with previous version 0.1-0 dated 2009-12-11

Author: Romain Francois
Title: bibtex parser
Description: Utility to parse a bibtex file

Diff between bibtex versions 0.1-0 dated 2009-12-11 and 0.1-2 dated 2009-12-13

 DESCRIPTION           |    8 
 inst/bibparse.output  |    4 
 man/bibtex-package.Rd |    4 
 src/Makevars          |only
 src/biblex.c          |   48 +-
 src/bibparse.c        |  841 ++++++++++++++++++++++++++++++++------------------
 src/bibparse.h        |   51 ---
 src/bibtex.h          |    1 
 8 files changed, 595 insertions(+), 362 deletions(-)

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Package arm updated to version 1.2-12 with previous version 1.2-11.02 dated 2009-12-11

Author: Andrew Gelman , Yu-Sung Su , Masanao Yajima , Jennifer Hill , Maria Grazia Pittau , Jouni Kerman and Tian Zheng
Title: Data Analysis Using Regression and Multilevel/Hierarchical Models
Description: R functions for processing lm, glm, mer and polr outputs.

Diff between arm versions 1.2-11.02 dated 2009-12-11 and 1.2-12 dated 2009-12-13

 CHANGELOG   |   10 +++++++---
 DESCRIPTION |    8 ++++----
 R/simmer.R  |    8 +++-----
 3 files changed, 14 insertions(+), 12 deletions(-)

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Package VLMC updated to version 1.3-12 with previous version 1.3-11 dated 2009-11-19

Author: Martin Maechler
Title: VLMC -- Variable Length Markov Chains
Description: Functions, Classes & Methods for estimation, prediction, and simulation (bootstrap) of VLMC -- Variable Length Markov Chain -- Models

Diff between VLMC versions 1.3-11 dated 2009-11-19 and 1.3-12 dated 2009-12-13

 ChangeLog                  |    7 +++++++
 DESCRIPTION                |    8 ++++----
 R/vlmc.R                   |   20 ++++++++++----------
 man/vlmc.version.Rd        |    2 +-
 tests/AIC-etc.Rout.save    |   23 ++++++++++++-----------
 tests/iid-cutoff.Rout.save |    4 ++--
 tests/pred-vlmc.Rout.save  |   12 ++++++------
 7 files changed, 42 insertions(+), 34 deletions(-)

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Package RSEIS updated to version 2.3-3 with previous version 2.3-1 dated 2009-11-30

Author: Jonathan M. Lees
Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to analyze seismic data, via, spectrum analysis, wavelet transforms, particle motion, hodograms.

Diff between RSEIS versions 2.3-1 dated 2009-11-30 and 2.3-3 dated 2009-12-13

 DESCRIPTION          |    6 +++---
 R/JGET.seis.R        |    3 ++-
 R/convert2Rseis.R    |only
 R/info.seis.R        |only
 R/infoDB.R           |    2 +-
 R/plotevol2.R        |   17 ++++++++++++-----
 inst/doc/hodo.pdf    |binary
 inst/doc/rseis.pdf   |binary
 man/RSEIS-package.Rd |    2 +-
 man/convert2Rseis.Rd |only
 man/info.seis.Rd     |only
 man/plotevol.Rd      |   12 ++++++++++--
 12 files changed, 29 insertions(+), 13 deletions(-)

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Package RQuantLib updated to version 0.3.1 with previous version 0.3.0 dated 2009-09-06

Author: Dirk Eddelbuettel and Khanh Nguyen
Title: R interface to the QuantLib library
Description: The RQuantLib package makes parts of QuantLib visible to the R user. Currently a number option pricing functions are included, both vanilla and exotic, as well as a broad range of fixed-income functions, as well a general utilities such as business day calendar computations. Further software contributions are welcome. The QuantLib project aims to provide a comprehensive software framework for quantitative finance. The goal is to provide a standard open source library for quantitative analysis, modeling, trading, and risk management of financial assets. The Windows binary version is self-contained and does not require a QuantLib (or Boost) installation. RQuantLib uses the Rcpp R/C++ interface class library. See the Rcpp package on CRAN (or R-Forge) for more information on Rcpp. Note that while RQuantLib's code is licensed under the GPL (v2 or later), QuantLib itself is released under a somewhat less restrictive Open Source license (see QuantLib-License.txt).

Diff between RQuantLib versions 0.3.0 dated 2009-09-06 and 0.3.1 dated 2009-12-13

 DESCRIPTION                      |   10 
 configure                        | 3111 ++++++++++++++++++---------------------
 configure.in                     |    8 
 inst/ChangeLog                   |   31 
 man/Bond.Rd                      |   26 
 man/BondUtilities.Rd             |    5 
 man/DiscountCurve.Rd             |   34 
 man/Enum.Rd                      |    2 
 man/FixedRateBondPriceByYield.Rd |    6 
 man/FixedRateBondYield.Rd        |    6 
 man/ZeroPriceByYield.Rd          |    4 
 man/ZeroYield.Rd                 |    6 
 src/Makefile.win                 |   51 
 src/bermudan.cpp                 |    6 
 src/bonds.cpp                    |   14 
 src/curves.cpp                   |  151 -
 src/discount.cpp                 |  178 +-
 src/rquantlib.hpp                |    4 
 src/utils.cpp                    |    8 
 19 files changed, 1749 insertions(+), 1912 deletions(-)

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Package RFreak updated to version 0.2-7 with previous version 0.2-6 dated 2009-11-08

Author: Robin Nunkesser
Title: R/FrEAK interface
Description: An R interface to a modified version of the Free Evolutionary Algorithm Kit FrEAK. FrEAK is a toolkit written in Java to design and analyze evolutionary algorithms. Both the R interface and an extended version of FrEAK are contained in the RFreak package. For more information on FrEAK see http://sourceforge.net/projects/freak427/.

Diff between RFreak versions 0.2-6 dated 2009-11-08 and 0.2-7 dated 2009-12-13

 RFreak-0.2-6/RFreak/inst/java/rfreak-0.2-4.jar                                                                            |only
 RFreak-0.2-7/RFreak/DESCRIPTION                                                                                           |    8 
 RFreak-0.2-7/RFreak/inst/java/README                                                                                      |    2 
 RFreak-0.2-7/RFreak/inst/java/build.xml                                                                                   |    4 
 RFreak-0.2-7/RFreak/inst/java/lib/ostermillerutils_1_07_00.jar                                                            |only
 RFreak-0.2-7/RFreak/inst/java/rfreak-0.2-5.jar                                                                            |only
 RFreak-0.2-7/RFreak/inst/java/src/freak/core/modulesupport/ClassCollector.java                                            |    2 
 RFreak-0.2-7/RFreak/inst/java/src/freak/core/util/GraphViz.java                                                           |    2 
 RFreak-0.2-7/RFreak/inst/java/src/freak/gui/gpas/GPASDialog.java                                                          |   15 
 RFreak-0.2-7/RFreak/inst/java/src/freak/gui/scheduleeditor/ScheduleEditor.java                                            |    2 
 RFreak-0.2-7/RFreak/inst/java/src/freak/gui/scheduleeditor/ScheduleEditorPanel.java                                       |    2 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/fitness/pointset/AbstractRobustRegressionFitness.java                      |    4 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/fitness/pointset/AbstractStaticSingleObjectiveRobustRegressionFitness.java |   10 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/fitness/pointset/LQDOptimization.java                                      |    1 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/operator/initialization/booleanfunction                                    |only
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/postprocessor/booleanfunction/Count.java                                   |   13 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/BooleanFunction.java                                           |   19 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/AndNode.java                                         |    2 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/AtomicNode.java                                      |    2 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/DNFTree.java                                         |   12 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/Data.java                                            |  228 ++++++++--
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/OperatorNode.java                                    |    2 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/OrNode.java                                          |    2 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/StaticCompareNode.java                               |   16 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/StaticConstantNode.java                              |   10 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/StaticInputNode.java                                 |    2 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/VariableCompareNode.java                             |    2 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/VariableConstantNode.java                            |    2 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/VariableInputNode.java                               |    2 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/stoppingcriterion/PredictingModelFound.java                                |    1 
 RFreak-0.2-7/RFreak/inst/java/src/freak/module/view/RReturn.java                                                          |    4 
 RFreak-0.2-7/RFreak/inst/java/src/freak/rinterface/control/RFreak.java                                                    |    2 
 RFreak-0.2-7/RFreak/inst/java/src/freak/rinterface/model/RReturns.java                                                    |   17 
 RFreak-0.2-7/RFreak/inst/java/src/freak/rinterface/model/ScheduleConfigurator.java                                        |   13 
 34 files changed, 327 insertions(+), 76 deletions(-)

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Package ProfessR updated to version 1.1-0 with previous version 1.0-8 dated 2009-02-15

Author: Jonathan M. Lees
Title: Grades Setting and Exam Maker
Description: Programs to determine student grades and create examinations from Question banks. Programs will create numerous multiple choice exams, randomly shuffled, for different versions of same question list.

Diff between ProfessR versions 1.0-8 dated 2009-02-15 and 1.1-0 dated 2009-12-13

 DESCRIPTION             |   11 ++++---
 R/IDandEM.R             |    1 
 R/UNCketron.R           |only
 R/getKEY.R              |only
 R/repair.id.R           |   71 ++++++++++++++++++++++++++++++++++++++++++------
 R/version.exam.R        |   11 ++++++-
 inst/doc/ExamMaker.pdf  |binary
 inst/doc/Grader.pdf     |binary
 man/ProfessR-package.Rd |    2 -
 man/UNCkeytron.Rd       |only
 man/getKEY.Rd           |only
 11 files changed, 82 insertions(+), 14 deletions(-)

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New package GrassmannOptim with initial version 1.0
Package: GrassmannOptim
Type: Package
Title: Grassmann Manifold Optimization
Version: 1.0
Date: 2009-12-11
Author: Kofi Placid Adragni and Seongho Wu
Maintainer: Kofi Placid Adragni
Depends: Matrix
Description: Optimizing a function F(U), where U is a semi-orthogonal matrix and F is invariant under an orthogonal transformation of U
License: GPL (>= 2)
Packaged: 2009-12-12 00:34:43 UTC; KAdragni
Repository: CRAN
Date/Publication: 2009-12-13 09:46:08

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