Mon, 14 Dec 2009

Package twitteR updated to version 0.1.5 with previous version 0.1.3 dated 2009-11-13

Author: Jeff Gentry
Title: R based Twitter client
Description: Provides an interface to the Twitter web API

Diff between twitteR versions 0.1.3 dated 2009-11-13 and 0.1.5 dated 2009-12-14

 DESCRIPTION           |    6 +++---
 R/dm.R                |   21 +++++++++++----------
 R/search.R            |    8 ++++----
 R/session.R           |    9 +++++++--
 R/status.R            |   16 ++++++++--------
 R/timeline.R          |   16 ++++++++--------
 R/users.R             |   12 ++++++------
 inst/doc/twitteR.pdf  |binary
 man/Rtweets.Rd        |    3 ++-
 man/dm.Rd             |   10 ++++++----
 man/getUser.Rd        |    7 ++++---
 man/publicTimeline.Rd |    9 +++++----
 man/search.Rd         |    3 ++-
 man/updateStatus.Rd   |    7 ++++---
 14 files changed, 70 insertions(+), 57 deletions(-)

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Package sp updated to version 0.9-52 with previous version 0.9-51 dated 2009-12-07

Author: Edzer Pebesma , Roger Bivand and others
Title: classes and methods for spatial data
Description: A package that provides classes and methods for spatial data. The classes document where the spatial location information resides, for 2D or 3D data. Utility functions are provided, e.g. for plotting data as maps, spatial selection, as well as methods for retrieving coordinates, for subsetting, print, summary, etc.

Diff between sp versions 0.9-51 dated 2009-12-07 and 0.9-52 dated 2009-12-14

 .Rbuildindex.19095      |only
 DESCRIPTION             |   10 
 NAMESPACE               |    2 
 R/spdists.R             |   25 
 inst/doc/sp.pdf         | 3646 ++++++++++++++++++++++++------------------------
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 9 files changed, 1862 insertions(+), 1831 deletions(-)

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Package sos updated to version 1.2-2 with previous version 1.1-7 dated 2009-11-03

Author: Spencer Graves, Sundar Dorai-Raj, and Romain Francois
Title: sos
Description: R related Search Engines

Diff between sos versions 1.1-7 dated 2009-11-03 and 1.2-2 dated 2009-12-14

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 sos-1.2-2/sos/R/summary.findFn.R            |   17 
 sos-1.2-2/sos/R/writeFindFn2xls.R           |  109 +++--
 sos-1.2-2/sos/inst/doc/RJournal.sty         |    1 
 sos-1.2-2/sos/inst/doc/sos.Rnw              |  531 +++++++++++++++++++++++++++-
 sos-1.2-2/sos/inst/doc/sos.pdf              |binary
 14 files changed, 625 insertions(+), 70 deletions(-)

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Package R2jags updated to version 0.01-28 with previous version 0.01-27 dated 2009-11-12

Author: Yu-Sung Su , Masanao Yajima ,
Title: A Package for Running jags from R
Description: Using this package to call jags from R.

Diff between R2jags versions 0.01-27 dated 2009-11-12 and 0.01-28 dated 2009-12-14

 CHANGELOG    |    4 ++++
 DESCRIPTION  |    8 ++++----
 R/autojags.R |    6 +++---
 3 files changed, 11 insertions(+), 7 deletions(-)

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Package KFAS updated to version 0.4.8 with previous version 0.4.7 dated 2009-11-11

Author: Jouni Helske
Title: Multivariate Kalman filter and smoother, simulation smoother and forecasting of state space models. State smoothing and approximate likelihood of exponential family state space models.
Description: Package KFAS provides functions for fast Kalman filtering, state and disturbance smoothing, forecasting and simulation of multivariate time-variant state space models. All functions can use exact diffuse initialisation when distributions of some or all elements of initial state vector are unknown. Filtering, state smoothing and simulation functions use sequential processing algorithm, which is faster than standard approach, and it also allows singularity of prediction error variance matrix. KFAS also contains function for likelihood of exponential family state space models and function for state smoothing of exponential family state space models.

Diff between KFAS versions 0.4.7 dated 2009-11-11 and 0.4.8 dated 2009-12-14

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 KFAS-0.4.8/KFAS/DESCRIPTION         |   15 +--
 KFAS-0.4.8/KFAS/NAMESPACE           |    2 
 KFAS-0.4.8/KFAS/R/KFAS.R            |  161 ++++++++++++++++++++++++++++++++++--
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 9 files changed, 163 insertions(+), 15 deletions(-)

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Package GeneReg updated to version 1.1.1 with previous version 1.1.0 dated 2009-09-08

Author: Tao Huang
Title: Construct time delay gene regulatory network
Description: GeneReg is an R package for inferring time delay gene regulatory network using time course gene expression profiles. The main idea of time delay linear model is to fit a linear regression model using a set of putative regulators to estimate the transcription pattern of a specific target gene.

Diff between GeneReg versions 1.1.0 dated 2009-09-08 and 1.1.1 dated 2009-12-14

 DESCRIPTION                    |    8 ++++----
 R/plot.R                       |    3 +--
 R/timedelay.lm.R               |    2 +-
 man/GeneReg-package.Rd         |   24 ++++++++++++++++--------
 man/timedelay.lm.Rd            |    6 +++---
 man/timedelay.lm.batch.Rd      |    3 ++-
 man/timedelay.univariate.lm.Rd |    5 +++--
 man/ts.bspline.Rd              |    2 +-
 8 files changed, 31 insertions(+), 22 deletions(-)

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New package BioStatR with initial version 1.0.0
Package: BioStatR
Version: 1.0.0
Date: 2009-12-14
Depends: R (>= 2.4.0)
Imports:
Enhances:
Suggests:
Title: Exercices et problèmes de statistique avec le logiciel R
Author: Frederic Bertrand , Myriam Maumy-Bertrand .
Maintainer: Frederic Bertrand
Description: This packages provides datasets for the book "Exercices et problèmes de statistique avec le logiciel R".
License: GPL-2 | GPL-3
Encoding: latin1
URL: http://www-irma.u-strasbg.fr/~fbertran/
Classification/MSC:
Packaged: 2009-12-14 11:35:28 UTC; Bertrand
Repository: CRAN
Date/Publication: 2009-12-14 19:58:34

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Package bibtex updated to version 0.1-3 with previous version 0.1-2 dated 2009-12-13

Author: Romain Francois
Title: bibtex parser
Description: Utility to parse a bibtex file

Diff between bibtex versions 0.1-2 dated 2009-12-13 and 0.1-3 dated 2009-12-14

 DESCRIPTION           |    8 ++++----
 R/bibtex.R            |    2 +-
 man/bibtex-package.Rd |    4 ++--
 3 files changed, 7 insertions(+), 7 deletions(-)

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New package bfast with initial version 1.1
Package: bfast
Version: 1.1
Date: 2009-12-11
Title: BFAST: Breaks For Additive Seasonal and Trend
Author: Jan Verbesselt, with contributions from Rob Hyndman
Maintainer: Jan Verbesselt
Depends: R (>= 2.0.0), strucchange, MASS, forecast
Description: BFAST integrates the decomposition of time series into trend, seasonal, and remainder components with methods for detecting and characterizing abrupt changes within the trend and seasonal components. BFAST can be used to analyze different types of satellite image time series and can be applied to other disciplines dealing with seasonal or non-seasonal time series, such as hydrology, climatology, and econometrics. The algorithm can be extended to label detected changes with information on the parameters of the fitted piecewise linear models.
License: GPL (>= 2)
URL: http://bfast.R-Forge.R-project.org/
LazyLoad: yes
LazyData: yes
Repository: CRAN
Repository/R-Forge/Project: bfast
Repository/R-Forge/Revision: 32
Date/Publication: 2009-12-14 19:58:44
Packaged: 2009-12-11 21:13:51 UTC; rforge

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Package betareg updated to version 2.1-2 with previous version 2.0-0 dated 2009-09-03

Author: Achim Zeileis [aut, cre], Francisco Cribari-Neto [ctb], Alexandre B. Simas [ctb] (earlier version by), Andrea V. Rocha [ctb] (earlier version by)
Title: Beta Regression
Description: Beta regression for modeling beta-distributed dependent variables, e.g., rates and proportions.

Diff between betareg versions 2.0-0 dated 2009-09-03 and 2.1-2 dated 2009-12-14

 DESCRIPTION              |   24 +-
 NAMESPACE                |    2 
 NEWS                     |   34 +++
 R/betareg.R              |  466 ++++++++++++++++++++++++++++++++++-------------
 R/leverage.R             |   38 ++-
 R/plot.betareg.R         |   47 +++-
 data/MockJurors.rda      |only
 data/ReadingSkills.rda   |only
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 inst/CITATION            |   13 -
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 man/betareg.Rd           |  117 ++++++++---
 man/betareg.control.Rd   |    4 
 man/gleverage.Rd         |    8 
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 man/predict.betareg.Rd   |   14 -
 man/residuals.betareg.Rd |    5 
 man/summary.betareg.Rd   |   36 ++-
 24 files changed, 600 insertions(+), 236 deletions(-)

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Package e1071 updated to version 1.5-22 with previous version 1.5-21 dated 2009-11-11

Author: Evgenia Dimitriadou, Kurt Hornik, Friedrich Leisch, David Meyer, and Andreas Weingessel
Title: Misc Functions of the Department of Statistics (e1071), TU Wien
Description: Functions for latent class analysis, short time Fourier transform, fuzzy clustering, support vector machines, shortest path computation, bagged clustering, naive Bayes classifier, ...

Diff between e1071 versions 1.5-21 dated 2009-11-11 and 1.5-22 dated 2009-12-14

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 15 files changed, 46 insertions(+), 78 deletions(-)

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New package openintro with initial version 1.0
Package: openintro
Type: Package
Title: Open Intro data sets and supplement functions
Version: 1.0
Date: 2009-12-13
Author: David M Diez and Christopher D Barr
Maintainer: David M Diez
Description: This package is intended to be a supplement to the Open Intro open source book project. This package contains data sets used in the book along with functions used to make the book's figures.
License: GPL-2
LazyLoad: yes
URL: http://www.openintro.org/
Packaged: Sun Dec 13 18:39:59 2009; diez
Repository: CRAN
Date/Publication: 2009-12-14 07:46:26

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Package estout updated to version 1.0-1 with previous version 0.9-1 dated 2009-12-09

Author: Felix Kaminsky , inspired by the estout package for Stata.
Title: Estimates Output
Description: This package is intended to speedup the process of creating model-comparing tables common in Macroeconomics. The function collection stores the estimates of several models and formats it to a table of the form estimate starred and std.err. below. The default output is LaTeX but output to CSV for later editing in a spreadsheet tool is possible as well. It works for linear models (lm) and panel models from the "plm"-package (plm). Two further implemented functions "descsto" and "desctab" enable you to export descriptive statistics of data-frames and single variables to LaTeX and CSV.

Diff between estout versions 0.9-1 dated 2009-12-09 and 1.0-1 dated 2009-12-14

 DESCRIPTION    |   26 ++++++++++++++------------
 R/descsto.R    |   51 +++++++++++++++++++++++++++++++++++++++++----------
 R/desctab.R    |   56 +++++++++++++++++++++++++++++++++++++++-----------------
 R/esttab.R     |   43 +++++++++++++++++++++++--------------------
 man/descsto.Rd |    3 ++-
 man/desctab.Rd |    5 ++++-
 man/esttab.Rd  |    5 ++---
 7 files changed, 125 insertions(+), 64 deletions(-)

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New package boolfun with initial version 0.2.1
Package: boolfun
Title: Cryptographic Boolean Functions
Version: 0.2.1
Date: 2009
Author: F.Lafitte
Description: This package can be used to assess cryptographic properties of Boolean functions (such as nonlinearity, algebraic immunity, resiliency, ...).
Maintainer: Frederic Lafitte
Depends: R (>= 2.3.0), R.oo
License: GPL (>= 3)
Keywords: package, math, logic
Packaged: 2009-12-13 20:30:03 UTC; fred
Repository: CRAN
Date/Publication: 2009-12-14 07:46:23

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Package ROCR updated to version 1.0-4 with previous version 1.0-3 dated 2009-10-28

Author: Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer
Title: Visualizing the performance of scoring classifiers.
Description: ROC graphs, sensitivity/specificity curves, lift charts, and precision/recall plots are popular examples of trade-off visualizations for specific pairs of performance measures. ROCR is a flexible tool for creating cutoff-parametrized 2D performance curves by freely combining two from over 25 performance measures (new performance measures can be added using a standard interface). Curves from different cross-validation or bootstrapping runs can be averaged by different methods, and standard deviations, standard errors or box plots can be used to visualize the variability across the runs. The parametrization can be visualized by printing cutoff values at the corresponding curve positions, or by coloring the curve according to cutoff. All components of a performance plot can be quickly adjusted using a flexible parameter dispatching mechanism. Despite its flexibility, ROCR is easy to use, with only three commands and reasonable default values for all optional parameters.

Diff between ROCR versions 1.0-3 dated 2009-10-28 and 1.0-4 dated 2009-12-14

 DESCRIPTION         |    8 ++++----
 INSTALL             |    2 +-
 NEWS                |    7 +++++++
 R/zzz.R             |   18 ++++++++++++++++--
 man/plot-methods.Rd |    2 +-
 5 files changed, 29 insertions(+), 8 deletions(-)

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