Author: Reinhard Furrer
Title: SPArse Matrix
Description: Set of function for sparse matrix algebra. Differences
with SparseM/Matrix are: (1) we only support (essentially) one
sparse matrix format, (2) based on transparent and simple
structure(s), (3) tailored for MCMC calculations within GMRF.
(4) S3 and S4 like-"compatible" ... and it is fast.
Diff between spam versions 0.15-5 dated 2009-09-18 and 0.20-2 dated 2009-12-16
DESCRIPTION | 10 +- NAMESPACE | 8 +- R/apply.R | 5 + R/definitions.R | 24 ++---- R/dist.R | 7 - R/foreign.R | 5 + R/helper.R | 119 ++++++++++++++++++++++++------ R/kronecker.R | 5 + R/plotting.R | 5 + R/profile.R | 10 -- R/spam_solve.R | 30 ++++--- R/xybind.R | 5 + data/Oral.rda |only data/germany.rda |only demo/00Index | 2 demo/article-jss-example1.R |only demo/article-jss-example2.R |only demo/article-jss.R | 28 ++++--- demo/cholesky.R | 5 + demo/spam.R | 5 + demo/timing.R | 5 + inst/NEWS | 38 +++++++++ inst/demodata |only man/Oral.Rd |only man/SPAM.Rd | 7 + man/UScounties.Rd | 5 + man/USprecip.Rd | 5 + man/adiag.Rd | 5 + man/allequal.Rd | 5 + man/apply.Rd | 7 + man/chol.Rd | 14 +-- man/complexity.Rd | 70 +++++++---------- man/det.Rd | 5 + man/diag.Rd | 5 + man/dim.Rd | 5 + man/display.Rd | 5 + man/foreign.Rd | 5 + man/germany.Rd |only man/history.spam.Rd | 13 +-- man/image.Rd | 5 + man/import.Rd | 5 + man/isSymmetric.Rd | 9 -- man/kronecker.Rd | 12 +-- man/lu.tri.Rd | 5 + man/math.Rd | 5 + man/math2.Rd | 5 + man/nearestdist.Rd | 5 + man/operations.Rd | 5 + man/options.Rd | 5 + man/ordering.Rd | 5 + man/powerboost.Rd | 5 + man/print.Rd | 10 -- man/rmvnorm.Rd | 34 ++++---- man/solve.Rd | 5 + man/spam-class.Rd | 5 + man/spam.chol.NgPeyton-class.Rd | 6 + man/spam.creation.Rd | 5 + man/spam.internal.Rd | 5 + man/summary.Rd | 5 + man/todo.Rd | 7 + man/triplet.Rd | 5 + man/version.Rd | 5 + man/xybind.Rd | 5 + src/spamown.f | 9 +- tests/demo_article-jss-example1.R |only tests/demo_article-jss-example1.Rout.save |only tests/demo_article-jss-example2.R |only tests/demo_article-jss-example2.Rout.save |only tests/demo_article-jss.R | 23 ++--- tests/demo_article-jss.Rout.save | 14 ++- tests/demo_cholesky.R | 5 + tests/demo_cholesky.Rout.save | 14 ++- tests/demo_spam.R | 5 + tests/demo_spam.Rout.save | 14 ++- tests/demo_timing.R | 29 +++++++ tests/demo_timing.Rout.save | 38 ++++++++- tests/displays.R | 5 + tests/displays.Rout.save | 14 ++- tests/dist.R | 5 + tests/dist.Rout.save | 14 ++- tests/foreign.R | 5 + tests/foreign.Rout.save | 10 +- tests/helper.R |only tests/helper.Rout.save |only tests/kronecker.R | 5 + tests/kronecker.Rout.save | 14 ++- tests/overall.R | 5 + tests/overall.Rout.save | 14 ++- tests/solve.R | 5 + tests/solve.Rout.save | 14 ++- tests/xybind.R | 5 + tests/xybind.Rout.save | 14 ++- 92 files changed, 622 insertions(+), 298 deletions(-)
Author: Martyn Plummer
Title: Bayesian graphical models using MCMC
Description: Interface to the JAGS MCMC library
Diff between rjags versions 1.0.3-12 dated 2009-11-10 and 1.0.3-13 dated 2009-12-16
DESCRIPTION | 10 +++++----- R/jags.R | 6 +++++- 2 files changed, 10 insertions(+), 6 deletions(-)
Author: Andrew Gelman
Diff between arm versions 1.2-12 dated 2009-12-13 and 1.2-12.02 dated 2009-12-16
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Description: R functions for processing lm, glm, mer and polr outputs.
CHANGELOG | 2 +-
DESCRIPTION | 16 ++++++++--------
NAMESPACE | 2 +-
R/simmer.R | 1 -
man/invlogit.Rd | 6 +++---
5 files changed, 13 insertions(+), 14 deletions(-)
Author: Adrian Barnett
Diff between season versions 0.2-2 dated 2009-10-20 and 0.2-3 dated 2009-12-16
Title: Seasonal analysis of health data
Description: Routines for the seasonal analysis of health data,
including regression models, time-stratified case-crossover,
plotting functions and residual checks.
DESCRIPTION | 8 +--
NAMESPACE | 4 +
R/casecross.R | 108 +++++++++++++++++++++++++---------------------
R/cosinor.R | 10 +++-
R/createAdj.R |only
R/dumpdata.R |only
R/monthmean.R |only
R/monthplot.R |only
R/nscosinor.R | 4 +
R/plot.Cosinor.R | 8 ++-
R/plot.Monthmean.R |only
R/plotCircular.R | 33 ++++++++++----
R/print.Monthmean.R |only
R/sinusoid.R |only
R/test.R |only
data/CVDdaily.RData |binary
man/CVDdaily.Rd | 3 -
man/casecross.Rd | 16 ++----
man/ciPhase.Rd | 2
man/cipolygon-internal.Rd |only
man/cosinor.Rd | 15 ++++--
man/createAdj.Rd |only
man/flagleap-internal.Rd |only
man/invyrfraction.Rd | 2
man/kalfil-internal.Rd |only
man/monthglm.Rd | 7 +-
man/monthmean.Rd |only
man/monthplot.Rd |only
man/nochars-internal.Rd |only
man/nscosinor.Rd | 9 ++-
man/peri.Rd | 2
man/phasecalc.Rd | 2
man/plot.Cosinor.Rd | 2
man/plot.monthglm.Rd | 2
man/plot.nsCosinor.Rd | 3 -
man/plotCircle.Rd | 2
man/plotCircular.Rd | 5 +-
man/print.Cosinor.Rd | 2
man/print.Monthmean.Rd |only
man/print.casecross.Rd | 2
man/print.nsCosinor.Rd | 2
man/rinvgamma-internal.Rd |only
man/season-internal.Rd | 10 ++--
man/season-package.Rd | 38 ++++------------
man/seasrescheck.Rd | 4 -
man/sinusoid.Rd |only
man/summary.Cosinor.Rd | 3 -
man/summary.casecross.Rd | 2
man/summary.monthglm.Rd | 2
man/summary.nsCosinor.Rd | 2
man/wtest.Rd | 2
man/yrfraction.Rd | 2
52 files changed, 177 insertions(+), 141 deletions(-)
Author: Michael Lawrence, John Verzani
Title: Toolkit implementation of gWidgets for RGtk2
Description: Port of gWidgets API to RGtk2
Diff between gWidgetsRGtk2 versions 0.0-55 dated 2009-12-15 and 0.0-56 dated 2009-12-16
ChangeLog | 4 ++++ DESCRIPTION | 6 +++--- NEWS | 6 ++++++ R/ggrid.R | 35 ++++++++++++++++++++--------------- 4 files changed, 33 insertions(+), 18 deletions(-)
Author: Rory Michelland
Diff between OligoSpecificitySystem versions 1.1 dated 2009-12-09 and 1.2 dated 2009-12-16
More information about OligoSpecificitySystem at CRAN
Title: Oligo Specificity System
Description: Calculate the theorical specificity of a system of
multiple primers used for PCR, qPCR primers or degenerated
primer design
DESCRIPTION | 6 +++---
R/dbb1.r | 5 ++++-
R/dbb2.r | 9 ++++++---
R/dbb3.r | 11 +++++++----
R/dbb4.r | 35 ++++++++++++++++++++++-------------
R/degencal4.r | 10 ++++++----
R/pcrcal4.r | 22 ++++++++++++++--------
7 files changed, 62 insertions(+), 36 deletions(-)
Permanent link
Author: Asger R. Pedersen
Diff between HMR versions 0.1.0 dated 2009-09-28 and 0.1.1 dated 2009-12-16
Title: Flux estimation with static chamber data
Description: Statistical analysis of static chamber concentration data
for trace gas flux estimation
DESCRIPTION | 6 +++---
R/HMR.fit1.R | 6 +++++-
man/HMR.Rd | 2 +-
3 files changed, 9 insertions(+), 5 deletions(-)
Author: Xiangyang Ye, Pharmacotherapy Outcomes Research Center,
University of Utah
Title: Medication Adherence: Commonly Used Definitions
Description: Medication Adherence: Commonly Used Definitions
Diff between medAdherence versions 1.01 dated 2009-04-28 and 1.02 dated 2009-12-16
medAdherence-1.01/medAdherence/data |only medAdherence-1.01/medAdherence/man/coms.Rd |only medAdherence-1.02/medAdherence/DESCRIPTION | 10 +++++----- medAdherence-1.02/medAdherence/R/medCMA.R | 4 ++-- medAdherence-1.02/medAdherence/R/medCMG.R | 4 ++-- medAdherence-1.02/medAdherence/R/medCMOS.R | 6 +++--- medAdherence-1.02/medAdherence/R/medCR.R | 6 +++--- medAdherence-1.02/medAdherence/R/medCSA.R | 4 ++-- medAdherence-1.02/medAdherence/R/medDBR.R | 4 ++-- medAdherence-1.02/medAdherence/R/medDTMPR.R | 4 ++-- medAdherence-1.02/medAdherence/R/medMPR.R | 4 ++-- medAdherence-1.02/medAdherence/R/medMPRm.R | 4 ++-- medAdherence-1.02/medAdherence/R/medPDC.R | 5 +++-- medAdherence-1.02/medAdherence/R/rxExampledt.R |only medAdherence-1.02/medAdherence/man/Adherence-package.Rd | 10 +++++----- medAdherence-1.02/medAdherence/man/medCMA.Rd | 5 +++-- medAdherence-1.02/medAdherence/man/medCMG.Rd | 5 +++-- medAdherence-1.02/medAdherence/man/medCMOS.Rd | 7 ++++--- medAdherence-1.02/medAdherence/man/medCR.Rd | 7 ++++--- medAdherence-1.02/medAdherence/man/medCSA.Rd | 7 ++++--- medAdherence-1.02/medAdherence/man/medDBR.Rd | 7 ++++--- medAdherence-1.02/medAdherence/man/medDTMPR.Rd | 5 +++-- medAdherence-1.02/medAdherence/man/medMPR.Rd | 5 +++-- medAdherence-1.02/medAdherence/man/medMPRm.Rd | 5 +++-- medAdherence-1.02/medAdherence/man/medPDC.Rd | 5 +++-- medAdherence-1.02/medAdherence/man/postData.Rd | 2 +- medAdherence-1.02/medAdherence/man/preData.Rd | 2 +- medAdherence-1.02/medAdherence/man/rxExampledt.Rd |only medAdherence-1.02/medAdherence/man/rxGaps.Rd | 2 +- 29 files changed, 70 insertions(+), 59 deletions(-)
Author: Chris Fraley and Adrian Raftery
Title: Model-Based Clustering / Normal Mixture Modeling
Description: Model-based clustering and normal mixture modeling
including Bayesian regularization
Diff between mclust versions 3.3.2 dated 2009-10-13 and 3.4 dated 2009-12-16
CHANGELOG | 5 DESCRIPTION | 9 LICENSE | 10 R/mclust.R | 864 ++++++++++++++++++++++++++++++++++++---------------- R/zzz.R | 5 man/defaultPrior.Rd | 19 - man/imputeData.Rd |only man/imputePairs.Rd |only 8 files changed, 632 insertions(+), 280 deletions(-)
Author: Andrew Redd
Title: Marginal Mean Model Plots
Description: Marginal mean model plots for linear (lm) and generalized
linear models (glm). Including tools for bandwidth
exploration. Built on the work from the alr3 and locfit
packages.
Diff between marginalmodelplots versions 0.4.1 dated 2009-02-08 and 0.4.2 dated 2009-12-16
DESCRIPTION | 27 ++++++++++++++++----------- man/aicc.Rd | 4 ++-- man/mmps-package.Rd | 10 ++++------ 3 files changed, 22 insertions(+), 19 deletions(-)
More information about marginalmodelplots at CRAN
Permanent link
Author: Achim Zeileis
Title: Measuring Inequality, Concentration, and Poverty
Description: Inequality, concentration, and poverty measures. Lorenz
curves (empirical and theoretical).
Diff between ineq versions 0.2-8 dated 2007-06-08 and 0.2-9 dated 2009-12-16
DESCRIPTION | 16 +++++++++------- R/ineq.R | 19 +++++++++++++++---- man/pov.Rd | 36 +++++++++++++++++++++--------------- 3 files changed, 45 insertions(+), 26 deletions(-)
Author: Thoralf Mildenberger, Yves Rozenholc, David Zasada.
Title: Construction of regular and irregular histograms with different
options for automatic choice of bins
Description: Automatic construction of regular and irregular histograms
as described in Rozenholc/Mildenberger/Gather (2009).
Diff between histogram versions 0.0-21 dated 2009-11-12 and 0.0-22 dated 2009-12-16
DESCRIPTION | 8 ++++---- R/histogram.R | 10 ++++++---- R/histogram.irregular.R | 15 ++++++++++++--- R/histogram.regular.R | 20 +++++++++++++++----- man/histogram.Rd | 47 ++++++++++++++++++++++++++++++++++++----------- 5 files changed, 73 insertions(+), 27 deletions(-)
Author: Edzer Pebesma
Diff between gstat versions 0.9-65 dated 2009-12-02 and 0.9-66 dated 2009-12-16
Title: geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator
(co)simulation; variogram and variogram map plotting utility
functions.
DESCRIPTION | 16
R/krige0.R | 46
inst/doc/gstat.pdf |29768 +++++++++++++++++++++++++--------------------------
man/krige.Rd | 6
src/gls.c | 3
src/glvars.c | 1
src/lex.c | 21
src/lex.l | 7
src/parse.c | 2
src/version.h | 4
tests/line.Rout.save | 44
11 files changed, 14917 insertions(+), 15001 deletions(-)
Author: Andrew Redd
Title: Wrapper and auxilliary functions for maps package to work with
grid graphics system.
Description: The gmaps package extends the functionality of the maps
package for the grid graphics system. This enables more
advanced plots and more functionality. It also makes use of
the grid structure to fix problems encountered with the
traditional graphics system, such as resizing of graphs.
Diff between gmaps versions 0.1 dated 2008-03-06 and 0.1.1 dated 2009-12-16
DESCRIPTION | 31 +++++++++++++++++++------------ man/mapGrob.Rd | 2 +- 2 files changed, 20 insertions(+), 13 deletions(-)
Author: Hadley Wickham
Diff between ggplot2 versions 0.8.4 dated 2009-12-09 and 0.8.5 dated 2009-12-16
Title: An implementation of the Grammar of Graphics
Description: An implementation of the grammar of graphics in R. It
combines the advantages of both base and lattice graphics:
conditioning and shared axes are handled automatically, and you
can still build up a plot step by step from multiple data
sources. It also implements a sophisticated multidimensional
conditioning system and a consistent interface to map data to
aesthetic attributes. See the ggplot2 website for more
information, documentation and examples.
ggplot2-0.8.4/ggplot2/man/scale_alpha.rd |only
ggplot2-0.8.4/ggplot2/man/scale_linetype.rd |only
ggplot2-0.8.4/ggplot2/man/scale_shape.rd |only
ggplot2-0.8.4/ggplot2/man/scale_size.rd |only
ggplot2-0.8.5/ggplot2/CHANGELOG | 37 +++++
ggplot2-0.8.5/ggplot2/DESCRIPTION | 12 -
ggplot2-0.8.5/ggplot2/NEWS | 109 ++++++++++------
ggplot2-0.8.5/ggplot2/R/aaa-.r | 1
ggplot2-0.8.5/ggplot2/R/aes.r | 9 +
ggplot2-0.8.5/ggplot2/R/coord-.r | 6
ggplot2-0.8.5/ggplot2/R/coord-cartesian-.r | 15 +-
ggplot2-0.8.5/ggplot2/R/coord-cartesian-equal.r | 28 +++-
ggplot2-0.8.5/ggplot2/R/coord-cartesian-flipped.r | 2
ggplot2-0.8.5/ggplot2/R/coord-map.r | 4
ggplot2-0.8.5/ggplot2/R/coord-polar.r | 11 +
ggplot2-0.8.5/ggplot2/R/coord-transform.r | 13 +
ggplot2-0.8.5/ggplot2/R/facet-.r | 8 -
ggplot2-0.8.5/ggplot2/R/facet-grid-.r | 21 ++-
ggplot2-0.8.5/ggplot2/R/facet-wrap.r | 28 +++-
ggplot2-0.8.5/ggplot2/R/geom-hline.r | 4
ggplot2-0.8.5/ggplot2/R/geom-path-.r | 60 ++++++++
ggplot2-0.8.5/ggplot2/R/geom-text.r | 23 +++
ggplot2-0.8.5/ggplot2/R/geom-vline.r | 4
ggplot2-0.8.5/ggplot2/R/grob-grid.r | 27 +--
ggplot2-0.8.5/ggplot2/R/guides-legend.r | 48 ++++---
ggplot2-0.8.5/ggplot2/R/labels.r | 9 -
ggplot2-0.8.5/ggplot2/R/layer.r | 19 ++
ggplot2-0.8.5/ggplot2/R/plot-construction.r | 11 +
ggplot2-0.8.5/ggplot2/R/plot-render.r | 8 -
ggplot2-0.8.5/ggplot2/R/plot.r | 2
ggplot2-0.8.5/ggplot2/R/quick-plot.r | 8 -
ggplot2-0.8.5/ggplot2/R/scale-continuous-.r | 29 +++-
ggplot2-0.8.5/ggplot2/R/scale-continuous-alpha.r | 9 -
ggplot2-0.8.5/ggplot2/R/scale-continuous-colour.r | 34 +---
ggplot2-0.8.5/ggplot2/R/scale-convenience.r | 24 +++
ggplot2-0.8.5/ggplot2/R/scale-defaults.r | 1
ggplot2-0.8.5/ggplot2/R/scale-discrete-.r | 8 -
ggplot2-0.8.5/ggplot2/R/scale-discrete-colour.r | 11 +
ggplot2-0.8.5/ggplot2/R/scale-discrete-grey.r | 7 -
ggplot2-0.8.5/ggplot2/R/scale-identity.r | 9 -
ggplot2-0.8.5/ggplot2/R/scale-linetype.r | 7 -
ggplot2-0.8.5/ggplot2/R/scale-manual.r | 6
ggplot2-0.8.5/ggplot2/R/scale-shape.r | 12 +
ggplot2-0.8.5/ggplot2/R/scale-size.r | 14 +-
ggplot2-0.8.5/ggplot2/R/scales-.r | 83 +++++-------
ggplot2-0.8.5/ggplot2/R/stat-.r | 12 +
ggplot2-0.8.5/ggplot2/R/stat-bin.r | 37 +++--
ggplot2-0.8.5/ggplot2/R/stat-contour.r | 31 +---
ggplot2-0.8.5/ggplot2/R/stat-density-2d.r | 23 ++-
ggplot2-0.8.5/ggplot2/R/trans-.r | 17 --
ggplot2-0.8.5/ggplot2/R/trans-scales.r | 2
ggplot2-0.8.5/ggplot2/R/utilities-position.r | 19 ++
ggplot2-0.8.5/ggplot2/R/utilities.r | 10 +
ggplot2-0.8.5/ggplot2/R/xxx-digest.r | 2
ggplot2-0.8.5/ggplot2/R/xxx.r | 8 -
ggplot2-0.8.5/ggplot2/R/zxx.r | 6
ggplot2-0.8.5/ggplot2/expt/zzz-describe.r |only
ggplot2-0.8.5/ggplot2/inst |only
ggplot2-0.8.5/ggplot2/man/aes-s3.rd | 3
ggplot2-0.8.5/ggplot2/man/bin-xb.rd | 3
ggplot2-0.8.5/ggplot2/man/bolus-ggplot-9x.rd | 2
ggplot2-0.8.5/ggplot2/man/check-breaks-and-labels-7z.rd |only
ggplot2-0.8.5/ggplot2/man/coord_equal.rd | 10 +
ggplot2-0.8.5/ggplot2/man/equal-ranges-wa.rd | 2
ggplot2-0.8.5/ggplot2/man/expand-limits-54.rd |only
ggplot2-0.8.5/ggplot2/man/f5.rd | 2
ggplot2-0.8.5/ggplot2/man/fullseq-20.rd | 3
ggplot2-0.8.5/ggplot2/man/geom_contour.rd | 8 -
ggplot2-0.8.5/ggplot2/man/geom_density2d.rd | 8 -
ggplot2-0.8.5/ggplot2/man/geom_line.rd | 2
ggplot2-0.8.5/ggplot2/man/geom_path.rd | 30 +++-
ggplot2-0.8.5/ggplot2/man/geom_quantile.rd | 8 -
ggplot2-0.8.5/ggplot2/man/geom_text.rd | 11 +
ggplot2-0.8.5/ggplot2/man/grobGrid-67.rd | 10 -
ggplot2-0.8.5/ggplot2/man/scale_alpha_continuous.rd |only
ggplot2-0.8.5/ggplot2/man/scale_brewer.rd | 5
ggplot2-0.8.5/ggplot2/man/scale_continuous.rd | 5
ggplot2-0.8.5/ggplot2/man/scale_discrete.rd | 7 -
ggplot2-0.8.5/ggplot2/man/scale_gradient.rd | 8 -
ggplot2-0.8.5/ggplot2/man/scale_gradient2.rd | 8 -
ggplot2-0.8.5/ggplot2/man/scale_gradientn.rd | 8 -
ggplot2-0.8.5/ggplot2/man/scale_grey.rd | 5
ggplot2-0.8.5/ggplot2/man/scale_hue.rd | 5
ggplot2-0.8.5/ggplot2/man/scale_identity.rd | 11 -
ggplot2-0.8.5/ggplot2/man/scale_linetype_discrete.rd |only
ggplot2-0.8.5/ggplot2/man/scale_manual.rd | 11 -
ggplot2-0.8.5/ggplot2/man/scale_shape_discrete.rd |only
ggplot2-0.8.5/ggplot2/man/scale_size_continuous.rd |only
ggplot2-0.8.5/ggplot2/man/stat_bin.rd | 14 +-
ggplot2-0.8.5/ggplot2/man/stat_contour.rd | 1
ggplot2-0.8.5/ggplot2/man/stat_density2d.rd | 18 +-
ggplot2-0.8.5/ggplot2/man/trim-infinite-ly.rd |only
92 files changed, 780 insertions(+), 376 deletions(-)
Author: Friedrich Leisch and Bettina Gruen
Title: Flexible Mixture Modeling
Description: FlexMix implements a general framework for finite mixtures
of regression models using the EM algorithm. FlexMix provides
the E-step and all data handling, while the M-step can be
supplied by the user to easily define new models. Existing
drivers implement mixtures of standard linear models,
generalized linear models and model-based clustering.
Diff between flexmix versions 2.2-3 dated 2009-05-29 and 2.2-4 dated 2009-12-16
DESCRIPTION | 10 NAMESPACE | 6 NEWS | 9 R/allGenerics.R | 4 R/flexmix.R | 15 R/infocrit.R | 12 R/lmer.R |only R/lmm.R |only R/plot-flexmix.R | 6 R/stepFlexmix.R | 8 inst/NEWS | 9 inst/doc/flexmix-intro.pdf | 1708 +++++++++---------- inst/doc/mixture-regressions.pdf |binary inst/doc/regression-examples.pdf | 3461 +++++++++++++++++++-------------------- man/EIC.Rd |only man/ExLinear.Rd | 4 man/FLXMCmvcombi.Rd | 4 man/FLXMRlmer.Rd |only man/FLXcontrol-class.Rd | 4 man/ICL.Rd | 4 man/bioChemists.Rd | 16 man/flexmix.Rd | 4 man/salmonellaTA98.Rd | 28 man/stepFlexmix.Rd | 4 tests/r-news-2007.R |only 25 files changed, 2700 insertions(+), 2616 deletions(-)
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann
Gneiting, University of Washington With contributions from
Bobby Yuen and Michael Polokowski
Title: Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts
from ensemble forecasts and weather observations.
Diff between ensembleBMA versions 4.3.3 dated 2009-09-18 and 4.4 dated 2009-12-16
CHANGELOG | 7 DESCRIPTION | 8 R/CRPS.default.R | 4 R/CRPScap.R |only R/MAE.default.R | 92 +++--- R/controlBMAgamma.R | 8 R/controlBMAgamma0.R | 9 R/controlBMAnormal.R | 6 R/crps.R | 5 R/crps.ensembleBMAgamma.R | 58 +-- R/crps.ensembleBMAgamma0.R | 95 ++---- R/crps.ensembleBMAnormal.R | 86 +++-- R/crps.fitBMAgamma.R | 43 +- R/crps.fitBMAgamma0.R | 62 ++-- R/crps.fitBMAnormal.R | 63 ++-- R/ensembleBMAgamma.R | 5 R/ensembleBMAgamma0.R | 28 + R/ensembleBMAnormal.R | 4 R/ensembleData.R | 8 R/fitBMAgamma.R | 87 ++--- R/fitBMAgamma0.R | 579 +++++++++++++++++++++----------------- R/fitBMAnormal.R | 6 R/mathITandFH.default.R |only R/pit.ensembleBMAgamma.R | 17 + R/pit.ensembleBMAgamma0.R | 4 R/pit.fitBMAgamma.R | 17 + R/pit.fitBMAgamma0.R | 6 R/quantBMAnormal.R | 4 R/quantileForecast.fitBMAgamma0.R | 5 R/startupSpeed.R |only R/startupSpeed.ensembleData.R |only R/subset.ensembleData.R | 2 R/verifRank.R | 4 man/MAE.Rd | 8 man/brierScore.Rd | 9 man/cdf.Rd | 8 man/controlBMAgamma.Rd | 15 man/controlBMAgamma0.Rd | 17 - man/controlBMAnormal.Rd | 6 man/crps.Rd | 34 -- man/ensBMAtest.Rd | 6 man/ensembleBMAgamma.Rd | 3 man/ensembleData.Rd | 26 + man/fitBMAgamma.Rd | 1 man/pit.Rd | 8 man/quantileForecast.Rd | 14 man/trainingData.Rd | 8 47 files changed, 839 insertions(+), 646 deletions(-)
Author: Nils B. Weidmann
Diff between cshapes versions 0.1-2 dated 2009-11-15 and 0.1-3 dated 2009-12-16
Title: CShapes Dataset and Utilities
Description: Package for CShapes, a GIS dataset of country boundaries
(1946-2008). Includes functions for data extraction and the
computation of weights matrices.
DESCRIPTION | 8 ++++----
man/cshapes-package.Rd | 12 ++++++------
2 files changed, 10 insertions(+), 10 deletions(-)
Author: Juliane Schaefer, Rainer Opgen-Rhein, and Korbinian Strimmer.
Title: Efficient Estimation of Covariance and (Partial) Correlation
Description: This package implements a James-Stein-type shrinkage
estimator for the covariance matrix, with separate shrinkage
for variances and correlations. The details of the method are
explained in Sch\"afer and Strimmer (2005) and Opgen-Rhein and
Strimmer (2007). The approach is both computationally as well
as statistically very efficient, it is applicable to "small n,
large p" data, and always returns a positive definite and
well-conditioned covariance matrix. In addition to inferring
the covariance matrix the package also provides shrinkage
estimators for partial correlations, partial variances, and
regression coefficients. The inverse of the covariance and
correlation matrix can be efficiently computed, and as well as
any arbitrary power of the shrinkage correlation matrix.
Furthermore, functions are available for fast singular value
decomposition, for computing the pseudoinverse, and for
checking the rank and positive definiteness of a matrix.
Diff between corpcor versions 1.5.3 dated 2009-10-11 and 1.5.4 dated 2009-12-16
DESCRIPTION | 8 ++++---- NEWS | 4 ++++ R/mpower.R | 40 +++++++++++++++++++++++++++++++--------- man/mpower.Rd | 12 +++++++++++- 4 files changed, 50 insertions(+), 14 deletions(-)
Author: David M. Schruth
Diff between caroline versions 0.1-6 dated 2009-11-08 and 0.1-7 dated 2009-12-16
Title: Generic Functions for R
Description: The caroline package is a collection of generic functions
useful for various applications.
caroline-0.1-6/caroline/man/trunc.path.Rd |only
caroline-0.1-7/caroline/DESCRIPTION | 7 +++----
caroline-0.1-7/caroline/R/plots.R | 18 +++++++++++++++---
caroline-0.1-7/caroline/R/string.R | 24 ------------------------
4 files changed, 18 insertions(+), 31 deletions(-)
More information about UScensus2000tract at CRAN
Permanent link
More information about UScensus2000add at CRAN
Permanent link
More information about UScensus2000cdp at CRAN
Permanent link
Author: Paul Gilbert
Diff between TSdbi versions 2009.5-2 dated 2009-06-10 and 2009.11-1 dated 2009-12-16
Title: Time Series Database Interface
Description: TSdbi provides a common interface to time series
databases. The objective is to define a standard interface so
users can retrieve time series data from various sources with a
simple, common, set of commands, and so programs can be written
to be portable with respect to the data source. The SQL
implementations also provide a database table design, so users
needing to set up a time series database have a reasonably
complete way to do this easily. The interface provides for a
variety of options with respect to the representation of time
series in R. There is also a (not yet well tested) mechanism to
handle multilingual data documentation.
DESCRIPTION | 10 ++--
NAMESPACE | 2
NEWS | 126 +++++++++++++++++++++++++++------------------------
inst/doc/TSdbi.pdf |binary
man/TSdbi-package.Rd | 7 +-
5 files changed, 77 insertions(+), 68 deletions(-)
Author: Paul Gilbert
Diff between TSMySQL versions 2009.5-1 dated 2009-10-27 and 2009.10-1 dated 2009-12-16
Title: Time Series Database Interface extensions for MySQL
Description: TSMySQL provides a MySQL interface for TSdbi.
DESCRIPTION | 12 ++++++------
inst/doc/TSMySQL.pdf |binary
2 files changed, 6 insertions(+), 6 deletions(-)
Author: Yu-Sung Su
Diff between R2jags versions 0.01-28 dated 2009-12-14 and 0.01-29 dated 2009-12-16
Title: A Package for Running jags from R
Description: Using this package to call jags from R.
CHANGELOG | 6 ++++++
DESCRIPTION | 8 ++++----
NAMESPACE | 2 ++
R/as.mcmc.R |only
R/jags.R | 47 ++++++++++++++++++++++-------------------------
R/jags2.R | 28 ++++++++++++++++++----------
R/traceplot.R | 2 ++
man/jags.Rd | 9 ++++++++-
8 files changed, 62 insertions(+), 40 deletions(-)
Author: Spencer Graves
Title: Companion to Tsay (2005) Analysis of Financial Time Series
Description: R companion to Tsay (2005) Analysis of Financial Time
Series, 2nd ed. (Wiley). Includes data sets, functions and
script files required to work some of the examples. Version
0.3-x includes R objects for all data files used in the text
and script files to recreate most of the analyses in chapters
1-3 and 9 plus parts of chapters 4 and 11.
Diff between FinTS versions 0.4-3 dated 2009-10-07 and 0.4-4 dated 2009-12-16
DESCRIPTION | 8 ++++---- NAMESPACE | 1 - R/Unitroot.R | 18 ++++++++++-------- 3 files changed, 14 insertions(+), 13 deletions(-)