Mon, 21 Dec 2009

Package svcR updated to version 1.6.3 with previous version 1.6.2 dated 2009-09-12

Author: Nicolas Turenne .
Title: svcR package
Description: svcR implements a support vector machine technique for clustering It includes choice between three kinds of kernel. Original cluster labeling and export of clusters. Format of data require 3 files: matrix, attributes, variables.

Diff between svcR versions 1.6.2 dated 2009-09-12 and 1.6.3 dated 2009-12-21

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More information about svcR at CRAN
Permanent link

Package survival updated to version 2.35-8 with previous version 2.35-7 dated 2009-09-09

Author: Terry Therneau, original R port by Thomas Lumley
Title: Survival analysis, including penalised likelihood.
Description: survival analysis: descriptive statistics, two-sample tests, parametric accelerated failure models, Cox model. Delayed entry (truncation) allowed for all models; interval censoring for parametric models. Case-cohort designs.

Diff between survival versions 2.35-7 dated 2009-09-09 and 2.35-8 dated 2009-12-21

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Package randomSurvivalForest updated to version 3.6.0 with previous version 3.5.1 dated 2008-09-05

Author: Hemant Ishwaran , Udaya B. Kogalur
Title: Ishwaran and Kogalur's Random Survival Forest
Description: Ensemble survival analysis based on a random forest of trees using random inputs.

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Package meta updated to version 1.1-5 with previous version 1.1-4 dated 2009-11-04

Author: Guido Schwarzer
Title: Meta-Analysis with R
Description: Fixed and random effects meta-analysis. Functions for tests of bias, forest and funnel plot.

Diff between meta versions 1.1-4 dated 2009-11-04 and 1.1-5 dated 2009-12-21

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Package maptools updated to version 0.7-29 with previous version 0.7-28 dated 2009-12-03

Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko, Stéphane Dray, David Forrest, Michael Friendly, Patrick Giraudoux, Duncan Golicher, Virgilio Gómez Rubio, Patrick Hausmann, Thomas Jagger, Sebastian P. Luque, Don MacQueen, Andrew Niccolai, Tom Short and Ben Stabler
Title: Tools for reading and handling spatial objects
Description: Set of tools for manipulating and reading geographic data, in particular ESRI shapefiles; C code used from shapelib. It includes binary access to GSHHS shoreline files. The package also provides interface wrappers for exchanging spatial objects with packages such as PBSmapping, spatstat, maps, RArcInfo, Stata tmap, WinBUGS, Mondrian, and others.

Diff between maptools versions 0.7-28 dated 2009-12-03 and 0.7-29 dated 2009-12-21

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Package classInt updated to version 0.1-14 with previous version 0.1-13 dated 2009-10-20

Author: Roger Bivand , with contributions by Hisaji Ono and Richard Dunlap
Title: Choose univariate class intervals
Description: A package for choosing univariate class intervals for mapping or other graphics purposes

Diff between classInt versions 0.1-13 dated 2009-10-20 and 0.1-14 dated 2009-12-21

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Package Oncotree updated to version 0.3.1 with previous version 0.3 dated 2009-03-12

Author: Aniko Szabo, Lisa Pappas
Title: Estimating oncogenetic trees
Description: Contains functions to construct and evaluate directed tree structures that model the process of occurrence of genetic alterations during carcinogenesis.

Diff between Oncotree versions 0.3 dated 2009-03-12 and 0.3.1 dated 2009-12-21

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Package Imap updated to version 1.01 with previous version 1.0 dated 2009-12-18

Author: John R. Wallace
Title: Interactive Mapping
Description: Zoom in and out of maps or any supplied lines or points, with control for color, poly fill, and aspect.

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Package tuneR updated to version 0.2-13 with previous version 0.2-12 dated 2009-11-19

Author: Uwe Ligges with contributions from Andrea Preusser and Claus Weihs, as well as code fragments and ideas from the former package 'sound' by Matthias Heymann.
Title: Analysis of music
Description: Collection of tools to analyze music, handling wave files, transcription, ...

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Package stringkernels updated to version 0.8.8 with previous version 0.8.7 dated 2009-09-23

Author: Martin Kober
Title: String Kernel Methods for kernlab
Description: Gapped and word-based string kernels for use with kernlab

Diff between stringkernels versions 0.8.7 dated 2009-09-23 and 0.8.8 dated 2009-12-21

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Package sculpt3d updated to version 0.2-2 with previous version 0.2-1 dated 2009-08-27

Author: Justin Donaldson
Title: A simple toolbar GUI for brushing RGL plots
Description: sculpt3d is a GTK+ toolbar that allows for more interactive control of a dataset inside the RGL plot window. Controls for simple brushing, highlighting, labeling, and mouseMode changes are provided by point-and-click rather than through the R terminal interface.

Diff between sculpt3d versions 0.2-1 dated 2009-08-27 and 0.2-2 dated 2009-12-21

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Package multcomp updated to version 1.1-3 with previous version 1.1-2 dated 2009-09-10

Author: Torsten Hothorn, Frank Bretz and Peter Westfall and Richard M. Heiberger and Andre Schuetzenmeister
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models.

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Package cudaBayesreg updated to version 0.2-1 with previous version 0.1-1 dated 2009-10-19

Author: Adelino Ferreira da Silva
Title: CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis
Description: Compute Unified Device Architecture (CUDA) is a software platform for massively parallel high-performance computing on NVIDIA GPUs. This package provides a CUDA implementation of a Bayesian multilevel model for the analysis of brain fMRI data. A fMRI data set consists of time series of volume data in 4D space. Typically, volumes are collected as slices of 64 x 64 "voxels". Analysis of fMRI data often relies on fitting linear regression models at each voxel of the brain. The volume of the data to be processed, and the type of statistical analysis to perform in fMRI analysis, call for high-performance computing strategies. In this package, the CUDA programming model uses a separate thread for fitting a linear regression model at each voxel in parallel. The global statistical model implements a Gibbs Sampler for hierarchical linear models with a normal prior. This model has been proposed by Rossi, Allenby and McCulloch in "Bayesian Statistics and Marketing", Chapter 3, and is referred to as "rhierLinearModel" in the R-package "bayesm". A notebook equipped with a NVIDIA "GeForce 8400M GS" card having Compute Capability 1.1 has been used in the tests.

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Package RInside updated to version 0.2.0 with previous version 0.1.1 dated 2009-09-28

Author: Dirk Eddelbuettel
Title: C++ classes to embed R in C++ applications
Description: C++ classes to embed R in C++ applications The RInside packages makes it easier to have 'R inside' your C++ application by providing a few wrapper classes. As R itself is embedded into your application, a shared library build of R is required. This works on Linux, OS X and even on Windows provided you use the same tools used to build R itself. Several examples are provided in the examples/ directory of the installed package, and Doxygen-generated documentation of the C++ classes is included as well.

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