Author: Brandon Whitcher
Diff between waveslim versions 1.6.1 dated 2007-10-11 and 1.6.3 dated 2009-12-22
Title: Basic wavelet routines for one-, two- and three-dimensional
signal processing
Description: Basic wavelet routines for time series (1D), image (2D)
and array (3D) analysis. The code provided here is based on
wavelet methodology developed in Percival and Walden (2000);
Gencay, Selcuk and Whitcher (2001); the dual-tree complex
wavelet transform (CWT) from Kingsbury (1999, 2001) as
implemented by Selesnick; and Hilbert wavelet pairs (Selesnick
2001, 2002). All figures in chapters 4-7 of GSW (2001) are
reproducible using this package and R code available at the
book website(s) below.
DESCRIPTION | 38 +++++++++++++++++++--------------
R/cplxdual2D.R |only
man/Andel.Rd | 56 ++++++++++++++++++++++++--------------------------
man/Dualtree.Rd | 16 +++++++-------
man/Farras.Rd | 4 +--
man/Selesnick.Rd | 14 ++++++------
man/cplxdual.Rd |only
man/dualfilt1.Rd | 18 ++++++++--------
man/dwt.3d.Rd | 16 ++++++--------
man/fb.Rd | 31 +++++++++++++++------------
man/hilbert.filter.Rd | 22 ++++++++++++-------
man/hwt.analysis.Rd | 8 +++----
man/modwt.3d.Rd | 19 ++++++++--------
man/mra.3d.Rd | 9 ++++----
man/nile.Rd | 4 +--
man/per.Rd | 13 +++--------
src/dwt.h |only
src/dwt2.c | 1
src/dwt3.c | 1
19 files changed, 140 insertions(+), 130 deletions(-)
Author: David Meyer and Kurt Hornik (with contributions by Christian
Buchta)
Title: Sets, Generalized Sets, Customizable Sets and Intervals
Description: Data structures and basic operations for ordinary sets,
generalizations such as fuzzy sets, multisets, and fuzzy
multisets, customizable sets, and intervals.
Diff between sets versions 1.0-1 dated 2009-11-06 and 1.0-2 dated 2009-12-22
DESCRIPTION | 6 - NAMESPACE | 2 R/fuzzylogic.R | 224 ++++++++++++++++++++++++++++++++++++++++++++++++------ R/predicates.R | 14 +++ R/similarity.R | 51 +++++++----- inst/doc/sets.pdf |binary man/cset.Rd | 2 man/fuzzy.Rd | 2 man/gset.Rd | 2 man/similarity.Rd | 14 +-- 10 files changed, 264 insertions(+), 53 deletions(-)
Author: Kurt Hornik, David Meyer, Christian Buchta
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and
matrices, based on index arrays and simple triplet
representations, respectively.
Diff between slam versions 0.1-6 dated 2009-10-21 and 0.1-7 dated 2009-12-22
DESCRIPTION | 8 +-- R/matrix.R | 100 ++++++++++++++++++++++++++----------------------- tests/matrix.R | 1 tests/matrix.Rout.save | 4 + 4 files changed, 63 insertions(+), 50 deletions(-)
Author: David A. James
Title: SQLite interface for R
Description: Database Interface R driver for SQLite. This package
embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the
SQLite engine (version 3.6.21) is included.
Diff between RSQLite versions 0.7-3 dated 2009-10-04 and 0.8-0 dated 2009-12-22
RSQLite-0.7-3/RSQLite/inst/UnitTests/Makefile |only RSQLite-0.7-3/RSQLite/inst/UnitTests/runall.sh |only RSQLite-0.7-3/RSQLite/inst/UnitTests/runalltests.R |only RSQLite-0.7-3/RSQLite/inst/UnitTests/runfile.sh |only RSQLite-0.8-0/RSQLite/DESCRIPTION | 9 RSQLite-0.8-0/RSQLite/NAMESPACE | 4 RSQLite-0.8-0/RSQLite/R/SQLite.R | 107 RSQLite-0.8-0/RSQLite/R/SQLiteSupport.R | 86 RSQLite-0.8-0/RSQLite/R/dbObjectId.R | 4 RSQLite-0.8-0/RSQLite/a.out.dSYM |only RSQLite-0.8-0/RSQLite/inst/NEWS | 227 RSQLite-0.8-0/RSQLite/inst/UnitTests/README |only RSQLite-0.8-0/RSQLite/inst/UnitTests/basic_type_test.R | 2 RSQLite-0.8-0/RSQLite/inst/UnitTests/dbConnect_test.R | 76 RSQLite-0.8-0/RSQLite/inst/UnitTests/dbGetInfo_test.R |only RSQLite-0.8-0/RSQLite/inst/UnitTests/dbWriteTable_test.R | 17 RSQLite-0.8-0/RSQLite/inst/UnitTests/multiple_cons_test.R | 30 RSQLite-0.8-0/RSQLite/inst/UnitTests/sqliteCopyDatabase_test.R |only RSQLite-0.8-0/RSQLite/man/SQLite.Rd | 18 RSQLite-0.8-0/RSQLite/man/dbBuildTableDefinition.Rd | 2 RSQLite-0.8-0/RSQLite/man/dbConnect-methods.Rd | 2 RSQLite-0.8-0/RSQLite/man/dbDriver-methods.Rd | 2 RSQLite-0.8-0/RSQLite/man/dbReadTable-methods.Rd | 2 RSQLite-0.8-0/RSQLite/man/make.db.names-methods.Rd | 4 RSQLite-0.8-0/RSQLite/man/sqliteCopyDatabase.Rd |only RSQLite-0.8-0/RSQLite/man/sqliteSupport.Rd | 68 RSQLite-0.8-0/RSQLite/src/RS-SQLite.c | 155 RSQLite-0.8-0/RSQLite/src/RS-SQLite.h | 21 RSQLite-0.8-0/RSQLite/src/sqlite/sqlite3.c |75198 +++++----- RSQLite-0.8-0/RSQLite/src/sqlite/sqlite3.h | 3696 RSQLite-0.8-0/RSQLite/src/sqlite/sqlite3ext.h | 2 RSQLite-0.8-0/RSQLite/tests/RSQLite_unit_tests.R |only 32 files changed, 45769 insertions(+), 33963 deletions(-)
Author: Yu-Sung Su
Diff between R2jags versions 0.01-29 dated 2009-12-16 and 0.01-30.01 dated 2009-12-22
Title: A Package for Running jags from R
Description: Using this package to call jags from R.
CHANGELOG | 4 ++++
DESCRIPTION | 8 ++++----
R/as.bugs.array2.R | 2 +-
3 files changed, 9 insertions(+), 5 deletions(-)
Author: Emma Huang and Andrew George
Title: Detection Localization Mapping for QTL
Description:
Diff between dlmap versions 1.0 dated 2008-11-14 and 1.03 dated 2009-12-22
dlmap-1.0/dlmap/R/dlmap.calc.pos.R |only dlmap-1.0/dlmap/R/dlmap.convert.cross.R |only dlmap-1.0/dlmap/R/dlmap.detect.asreml.R |only dlmap-1.0/dlmap/R/dlmap.detect.lme.R |only dlmap-1.0/dlmap/R/dlmap.link.plot.R |only dlmap-1.0/dlmap/R/dlmap.localize.asreml.R |only dlmap-1.0/dlmap/R/dlmap.localize.lme.R |only dlmap-1.0/dlmap/R/dlmap.map.det.asreml.R |only dlmap-1.0/dlmap/R/dlmap.map.det.lme.R |only dlmap-1.0/dlmap/R/dlmap.map.loc.asreml.R |only dlmap-1.0/dlmap/R/dlmap.map.loc.lme.R |only dlmap-1.0/dlmap/R/dlmap.merge.R |only dlmap-1.0/dlmap/R/dlmap.read.R |only dlmap-1.0/dlmap/R/dlmap.test.asreml.R |only dlmap-1.0/dlmap/R/dlmap.test.lme.R |only dlmap-1.0/dlmap/R/link.map.cross.R |only dlmap-1.0/dlmap/data/BSphe1.rda |only dlmap-1.0/dlmap/data/BSphe2.rda |only dlmap-1.0/dlmap/inst/doc/DLvignette-006.eps |only dlmap-1.0/dlmap/inst/doc/DLvignette-006.pdf |only dlmap-1.0/dlmap/inst/doc/DLvignette-015.eps |only dlmap-1.0/dlmap/inst/doc/DLvignette-015.pdf |only dlmap-1.0/dlmap/inst/doc/DLvignette-linkmap.eps |only dlmap-1.0/dlmap/inst/doc/DLvignette-linkmap.pdf |only dlmap-1.0/dlmap/inst/doc/DLvignette.Rnw |only dlmap-1.0/dlmap/inst/doc/DLvignette.dvi |only dlmap-1.0/dlmap/inst/doc/Rplots.pdf |only dlmap-1.0/dlmap/inst/doc/dl.det.log |only dlmap-1.0/dlmap/inst/doc/dl.trace |only dlmap-1.0/dlmap/inst/doc/dlgenin2.dat |only dlmap-1.0/dlmap/inst/doc/dlmapin2.dat |only dlmap-1.0/dlmap/inst/doc/dlphein2.dat |only dlmap-1.0/dlmap/man/BSphe1.Rd |only dlmap-1.0/dlmap/man/BSphe2.Rd |only dlmap-1.0/dlmap/man/dlmap.convert.cross.Rd |only dlmap-1.0/dlmap/man/dlmap.link.plot.Rd |only dlmap-1.0/dlmap/man/pvfx.Rd |only dlmap-1.0/dlmap/man/qchibar.Rd |only dlmap-1.03/dlmap/DESCRIPTION | 26 +- dlmap-1.03/dlmap/NAMESPACE |only dlmap-1.03/dlmap/R/calc.genoprob2.R |only dlmap-1.03/dlmap/R/calc.pos.R |only dlmap-1.03/dlmap/R/cintern.R |only dlmap-1.03/dlmap/R/detect.asreml.R |only dlmap-1.03/dlmap/R/detect.lme.R |only dlmap-1.03/dlmap/R/dlcross.R |only dlmap-1.03/dlmap/R/dlmap.asreml.R | 211 +++++++++++------------- dlmap-1.03/dlmap/R/dlmap.lme.R | 198 ++++++++++------------ dlmap-1.03/dlmap/R/localize.asreml.R |only dlmap-1.03/dlmap/R/localize.lme.R |only dlmap-1.03/dlmap/R/map.det.asreml.R |only dlmap-1.03/dlmap/R/map.det.lme.R |only dlmap-1.03/dlmap/R/map.loc.asreml.R |only dlmap-1.03/dlmap/R/map.loc.lme.R |only dlmap-1.03/dlmap/R/ngen.R |only dlmap-1.03/dlmap/R/ngen.dlcross.R |only dlmap-1.03/dlmap/R/ngen.dlmap.R |only dlmap-1.03/dlmap/R/nmrk.R |only dlmap-1.03/dlmap/R/nmrk.dlcross.R |only dlmap-1.03/dlmap/R/nmrk.dlmap.R |only dlmap-1.03/dlmap/R/nphen.R |only dlmap-1.03/dlmap/R/nphen.dlcross.R |only dlmap-1.03/dlmap/R/nphen.dlmap.R |only dlmap-1.03/dlmap/R/plot.dlcross.R |only dlmap-1.03/dlmap/R/plot.dlmap.R |only dlmap-1.03/dlmap/R/print.dlcross.R |only dlmap-1.03/dlmap/R/print.dlmap.R |only dlmap-1.03/dlmap/R/profileplot.R |only dlmap-1.03/dlmap/R/profileplot.dlmap.R |only dlmap-1.03/dlmap/R/summary.dlcross.R |only dlmap-1.03/dlmap/R/summary.dlmap.R |only dlmap-1.03/dlmap/R/test.asreml.R |only dlmap-1.03/dlmap/R/test.lme.R |only dlmap-1.03/dlmap/R/wald.test.asreml.R |only dlmap-1.03/dlmap/data/BSphe.rda |only dlmap-1.03/dlmap/inst/doc/DLvignette.pdf |binary dlmap-1.03/dlmap/man/BSphe.Rd |only dlmap-1.03/dlmap/man/data.access.Rd |only dlmap-1.03/dlmap/man/dlcross.Rd |only dlmap-1.03/dlmap/man/dlmap-internal.Rd | 58 +++--- dlmap-1.03/dlmap/man/dlmap-package.Rd | 24 +- dlmap-1.03/dlmap/man/dlmap.main.Rd | 55 ++---- dlmap-1.03/dlmap/man/plot.dlcross.Rd |only dlmap-1.03/dlmap/man/plot.dlmap.Rd |only dlmap-1.03/dlmap/man/profileplot.Rd |only dlmap-1.03/dlmap/man/summary.dlcross.Rd |only dlmap-1.03/dlmap/man/summary.dlmap.Rd |only 87 files changed, 269 insertions(+), 303 deletions(-)
Author: R Special Interest Group on Databases (R-SIG-DB)
Title: R Database Interface
Description: A database interface (DBI) definition for communication
between R and relational database management systems. All
classes in this package are virtual and need to be extended by
the various R/DBMS implementations.
Diff between DBI versions 0.2-4 dated 2007-10-17 and 0.2-5 dated 2009-12-22
DESCRIPTION | 18 R/DBI.R | 6 R/Util.R | 21 inst/NEWS | 11 inst/doc/DBI.Rnw | 2 inst/doc/DBI.pdf | 3594 +++++++++++++++++++++++---------------------- man/DBIConnection-class.Rd | 2 man/DBIDriver-class.Rd | 2 man/DBIObject-class.Rd | 2 man/DBIResult-class.Rd | 2 man/dbCallProc.Rd | 2 man/dbCommit.Rd | 2 man/dbConnect.Rd | 2 man/dbDataType.Rd | 2 man/dbDriver.Rd | 2 man/dbGetInfo.Rd | 4 man/dbListTables.Rd | 2 man/dbReadTable.Rd | 2 man/dbSendQuery.Rd | 2 man/dbSetDataMappings.Rd | 2 man/fetch.Rd | 2 man/make.db.names.Rd | 2 man/print.list.pairs.Rd | 2 23 files changed, 1909 insertions(+), 1779 deletions(-)
Author: Pierre Lefeuvre
Title: a Bunch of Structure and Sequence Analysis
Description: Sort sequence from genbank. Retrieve sequence information
from genbank (designed for viruses sequences and retrieve
information such as isolation dates and host). Detect group of
sequences presenting phylogeography signal. Read PDB file
(protein 3D structure file).
Diff between BoSSA versions 1.0 dated 2009-12-11 and 1.1 dated 2009-12-22
DESCRIPTION | 8 ++-- NAMESPACE | 3 + R/InfoGB.R | 102 +++++++++++++---------------------------------------- R/InfoGenBank.R | 8 ++-- R/grpPhylogeo.R | 17 +++----- man/InfoGenBank.Rd | 8 +++- man/distGPS.Rd |only man/grpPhylogeo.Rd | 6 ++- 8 files changed, 52 insertions(+), 100 deletions(-)