Sat, 26 Dec 2009

Package tgp updated to version 2.3 with previous version 2.2-4 dated 2009-11-22

Title: Bayesian treed Gaussian process models
Description: Bayesian nonstationary, semiparametric nonlinear regression and design by treed Gaussian processes with jumps to the limiting linear model (LLM). Special cases also implemented include Bayesian linear models, CART, treed linear models, stationary separable and isotropic Gaussian processes. Provides 1-d and 2-d plotting functions (with projection and slice capabilities) and tree drawing, designed for visualization of tgp-class output. Sensitivity analysis and multi-resolution models are supported. Sequential experimental design and adaptive sampling functions are also provided, including ALM, ALC, and expected improvement. The latter supports derivative-free optimization of noisy black-box functions.
Author: Robert B. Gramacy and Matt A. Taddy
Maintainer: Robert B. Gramacy

Diff between tgp versions 2.2-4 dated 2009-11-22 and 2.3 dated 2009-12-26

 ChangeLog                 |    8 +
 DESCRIPTION               |    6 -
 inst/doc/cat.iRnw         |   51 ++++++++--
 inst/doc/it.iRnw          |  102 ++++++++++++---------
 inst/doc/optim.iRnw       |  220 ++++++++++++++++++++++++----------------------
 inst/doc/sens.iRnw        |  130 ++++++++++++++-------------
 inst/doc/tgp2.pdf         |binary
 man/btgp.Rd               |   46 ---------
 man/plot.tgp.Rd           |    4 
 man/tgp.default.params.Rd |    2 
 10 files changed, 303 insertions(+), 266 deletions(-)

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Package spBayes updated to version 0.1-4 with previous version 0.1-3 dated 2009-06-24

Title: Univariate and Multivariate Spatial Modeling
Description: spBayes fits univariate and multivariate models with Markov chain Monte Carlo (MCMC). Author: Andrew O. Finley , Sudipto Banerjee , Bradley P. Carlin
Maintainer: Andrew O. Finley

Diff between spBayes versions 0.1-3 dated 2009-06-24 and 0.1-4 dated 2009-12-26

 DESCRIPTION                   |    8 
 R/dic.R                       |  664 ++++++++++++++++--------------------------
 R/spGLM.R                     |  215 +++++++++----
 R/spMvGLM.R                   |  223 +++++++++-----
 inst/doc/spBayes-vignette.pdf |binary
 man/spDIC.Rd                  |   90 +----
 man/spGGT.Rd                  |    2 
 man/spGLM.Rd                  |  140 +++-----
 man/spLM.Rd                   |    6 
 man/spMvGLM.Rd                |   27 +
 man/spMvLM.Rd                 |    6 
 man/spPredict.Rd              |    3 
 src/spGLM.cpp                 |    3 
 src/spGLM_AMCMC.cpp           |only
 src/spMvGLM.cpp               |   11 
 src/spMvGLM_AMCMC.cpp         |only
 src/spMvLM.cpp                |   25 -
 src/spPPGLM.cpp               |    2 
 src/spPPGLM_AMCMC.cpp         |only
 src/spPPMvGLM.cpp             |   14 
 src/spPPMvGLM_AMCMC.cpp       |only
 src/spPPMvLM.cpp              |   37 +-
 src/util.cpp                  |   57 +++
 src/util.h                    |    4 
 24 files changed, 771 insertions(+), 766 deletions(-)

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Package TeachingDemos updated to version 2.5 with previous version 2.4 dated 2009-06-26

Title: Demonstrations for teaching and learning
Description: This package is a set of demonstration functions that can be used in a classroom to demonstrate statistical concepts, or on your own to better understand the concepts or the programming. Author: Greg Snow
Maintainer: Greg Snow

Diff between TeachingDemos versions 2.4 dated 2009-06-26 and 2.5 dated 2009-12-26

 TeachingDemos-2.4/TeachingDemos/SyncToy_726f062a-4434-4055-9168-9e4dfdf9d479.dat |only
 TeachingDemos-2.4/TeachingDemos/SyncToy_cc1ca190-d98a-47e0-ad69-312b9db9af9b.dat |only
 TeachingDemos-2.5/TeachingDemos/DESCRIPTION                                      |    8 +++--
 TeachingDemos-2.5/TeachingDemos/NAMESPACE                                        |   10 ++++--
 TeachingDemos-2.5/TeachingDemos/NEWS                                             |   10 ++++++
 TeachingDemos-2.5/TeachingDemos/R/HWidentify.R                                   |only
 TeachingDemos-2.5/TeachingDemos/R/lattice.demo.R                                 |    2 +
 TeachingDemos-2.5/TeachingDemos/R/mysymbols.R                                    |    9 ++++--
 TeachingDemos-2.5/TeachingDemos/R/plot.dice.R                                    |    9 +++---
 TeachingDemos-2.5/TeachingDemos/R/sigma.test.R                                   |only
 TeachingDemos-2.5/TeachingDemos/R/tests.R                                        |only
 TeachingDemos-2.5/TeachingDemos/R/vis.test.R                                     |only
 TeachingDemos-2.5/TeachingDemos/man/HWidentify.Rd                                |only
 TeachingDemos-2.5/TeachingDemos/man/TeachingDemos-package.Rd                     |    4 ++
 TeachingDemos-2.5/TeachingDemos/man/bct.Rd                                       |    2 -
 TeachingDemos-2.5/TeachingDemos/man/ccc.Rd                                       |    1 
 TeachingDemos-2.5/TeachingDemos/man/cortest.Rd                                   |only
 TeachingDemos-2.5/TeachingDemos/man/identify.Map.Rd                              |    6 ++++
 TeachingDemos-2.5/TeachingDemos/man/mysymbols.Rd                                 |    3 ++
 TeachingDemos-2.5/TeachingDemos/man/normtest.Rd                                  |only
 TeachingDemos-2.5/TeachingDemos/man/project.Map.Rd                               |   10 +++++-
 TeachingDemos-2.5/TeachingDemos/man/recenter.Map.Rd                              |    5 ++-
 TeachingDemos-2.5/TeachingDemos/man/rgl.Map.Rd                                   |    5 ++-
 TeachingDemos-2.5/TeachingDemos/man/shadowtext.Rd                                |only
 TeachingDemos-2.5/TeachingDemos/man/sigma.test.Rd                                |only
 TeachingDemos-2.5/TeachingDemos/man/state.vbm.Rd                                 |   15 +++++-----
 TeachingDemos-2.5/TeachingDemos/man/vis.test.Rd                                  |only
 27 files changed, 71 insertions(+), 28 deletions(-)

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New package RcmdrPlugin.sos with initial version 0.1-0
Package: RcmdrPlugin.sos
Version: 0.1-0
Date: 2009-12-20
Title: Efficiently search R Help pages
Author: Liviu Andronic
Maintainer: Liviu Andronic
Depends: Rcmdr (>= 1.5-4), sos (>= 1.2-3), tcltk2
Description: Rcmdr interface to sos. The plug-in renders the sos searching functionality easily accessible via the Rcmdr menus. It also simplifies the task of performing multiple searches and subsequently obtaining the union or the intersection of the search results.
License: GPL (>= 2)
Repository: CRAN
Repository/R-Forge/Project: rsitesearch
Repository/R-Forge/Revision: 162
Date/Publication: 2009-12-26 14:50:38
Packaged: 2009-12-21 21:06:55 UTC; rforge

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Package BayesX updated to version 0.2-4 with previous version 0.2-3 dated 2009-07-18

Title: R Utilities Accompanying the Software Package BayesX
Description: This package provides functionality for exploring and visualising estimation results obtained with the software package BayesX for structured additive regression. It also provides functions that allow to read, write and manipulate map objects that are required in spatial analyses performed with BayesX, a free software for estimating structured additive regression models (http://www.stat.uni-muenchen.de/~bayesx). Author: Thomas Kneib, Felix Heinzl, Andreas Brezger, Daniel Sabanes Bove
Maintainer: Thomas Kneib

Diff between BayesX versions 0.2-3 dated 2009-07-18 and 0.2-4 dated 2009-12-26

 DESCRIPTION           |    8 -
 R/bnd2gra.R           |   26 ++++
 R/drawmap.R           |   66 +++++-------
 R/extractSamples.R    |  264 +++++++++++++++++++++++++++++++++++---------------
 R/getNumbers.R        |only
 inst/ChangeLog        |   23 +++-
 man/extractSamples.Rd |   14 ++
 man/getNumbers.Rd     |only
 8 files changed, 280 insertions(+), 121 deletions(-)

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