Title: Vector Generalized Linear and Additive Models
Diff between VGAM versions 0.7-9 dated 2009-06-16 and 0.7-10 dated 2010-01-05
Description: Vector generalized linear and additive models, and
associated models (Reduced-Rank VGLMs, Quadratic RR-VGLMs,
Reduced-Rank VGAMs). This package fits many models and
distribution by maximum likelihood estimation (MLE) or
penalized MLE. Also fits constrained ordination models in
ecology.
Author: Thomas W. Yee
Maintainer: Thomas Yee
VGAM-0.7-10/VGAM/BUGS |only
VGAM-0.7-10/VGAM/DESCRIPTION | 8
VGAM-0.7-10/VGAM/NAMESPACE | 7
VGAM-0.7-10/VGAM/NEWS | 30 +
VGAM-0.7-10/VGAM/R/aamethods.q | 75 +--
VGAM-0.7-10/VGAM/R/add1.vglm.q | 2
VGAM-0.7-10/VGAM/R/attrassign.R | 2
VGAM-0.7-10/VGAM/R/bAIC.q | 44 -
VGAM-0.7-10/VGAM/R/build.terms.vlm.q | 34 -
VGAM-0.7-10/VGAM/R/calibrate.q | 90 ++--
VGAM-0.7-10/VGAM/R/cao.R | 58 +-
VGAM-0.7-10/VGAM/R/cao.fit.q | 492 +++++++++++-----------
VGAM-0.7-10/VGAM/R/coef.vlm.q | 28 -
VGAM-0.7-10/VGAM/R/cqo.R | 3
VGAM-0.7-10/VGAM/R/cqo.fit.q | 371 +++++++++-------
VGAM-0.7-10/VGAM/R/deviance.vlm.q | 4
VGAM-0.7-10/VGAM/R/effects.vglm.q | 2
VGAM-0.7-10/VGAM/R/family.aunivariate.R |only
VGAM-0.7-10/VGAM/R/family.basics.R |only
VGAM-0.7-10/VGAM/R/family.binomial.R |only
VGAM-0.7-10/VGAM/R/family.bivariate.R |only
VGAM-0.7-10/VGAM/R/family.categorical.R |only
VGAM-0.7-10/VGAM/R/family.censored.R |only
VGAM-0.7-10/VGAM/R/family.circular.R |only
VGAM-0.7-10/VGAM/R/family.extremes.R |only
VGAM-0.7-10/VGAM/R/family.fishing.R |only
VGAM-0.7-10/VGAM/R/family.functions.R |only
VGAM-0.7-10/VGAM/R/family.genetic.R |only
VGAM-0.7-10/VGAM/R/family.glmgam.R |only
VGAM-0.7-10/VGAM/R/family.loglin.R |only
VGAM-0.7-10/VGAM/R/family.mixture.R |only
VGAM-0.7-10/VGAM/R/family.nonlinear.R |only
VGAM-0.7-10/VGAM/R/family.normal.R |only
VGAM-0.7-10/VGAM/R/family.positive.R |only
VGAM-0.7-10/VGAM/R/family.qreg.R |only
VGAM-0.7-10/VGAM/R/family.rcqo.R |only
VGAM-0.7-10/VGAM/R/family.rrr.R |only
VGAM-0.7-10/VGAM/R/family.survival.R |only
VGAM-0.7-10/VGAM/R/family.ts.R |only
VGAM-0.7-10/VGAM/R/family.univariate.R |only
VGAM-0.7-10/VGAM/R/family.vglm.R |only
VGAM-0.7-10/VGAM/R/family.zeroinf.R |only
VGAM-0.7-10/VGAM/R/fitted.vlm.R |only
VGAM-0.7-10/VGAM/R/formula.vlm.q | 28 -
VGAM-0.7-10/VGAM/R/generic.q | 2
VGAM-0.7-10/VGAM/R/links.q | 477 ++++++++++-----------
VGAM-0.7-10/VGAM/R/logLik.vlm.q | 10
VGAM-0.7-10/VGAM/R/model.matrix.vglm.q | 70 +--
VGAM-0.7-10/VGAM/R/mux.q | 76 +--
VGAM-0.7-10/VGAM/R/plot.vglm.q | 219 ++++-----
VGAM-0.7-10/VGAM/R/predict.vgam.q | 120 ++---
VGAM-0.7-10/VGAM/R/predict.vglm.q | 36 -
VGAM-0.7-10/VGAM/R/predict.vlm.q | 106 ++--
VGAM-0.7-10/VGAM/R/print.vglm.q | 36 -
VGAM-0.7-10/VGAM/R/print.vlm.q | 16
VGAM-0.7-10/VGAM/R/qrrvglm.control.q | 54 +-
VGAM-0.7-10/VGAM/R/qtplot.q | 155 +++---
VGAM-0.7-10/VGAM/R/residuals.vlm.q | 76 +--
VGAM-0.7-10/VGAM/R/rrvglm.R | 62 +-
VGAM-0.7-10/VGAM/R/rrvglm.control.q | 54 +-
VGAM-0.7-10/VGAM/R/rrvglm.fit.q | 175 +++----
VGAM-0.7-10/VGAM/R/s.q | 12
VGAM-0.7-10/VGAM/R/s.vam.q | 38 -
VGAM-0.7-10/VGAM/R/smart.R | 94 ++--
VGAM-0.7-10/VGAM/R/step.vglm.q | 2
VGAM-0.7-10/VGAM/R/summary.vgam.q | 70 +--
VGAM-0.7-10/VGAM/R/summary.vglm.q | 70 +--
VGAM-0.7-10/VGAM/R/summary.vlm.q | 50 +-
VGAM-0.7-10/VGAM/R/uqo.R | 218 ++++-----
VGAM-0.7-10/VGAM/R/vgam.R | 81 +--
VGAM-0.7-10/VGAM/R/vgam.control.q | 28 -
VGAM-0.7-10/VGAM/R/vgam.fit.q | 90 ++--
VGAM-0.7-10/VGAM/R/vgam.match.q | 26 -
VGAM-0.7-10/VGAM/R/vglm.R | 70 +--
VGAM-0.7-10/VGAM/R/vglm.control.q | 34 -
VGAM-0.7-10/VGAM/R/vglm.fit.q | 100 ++--
VGAM-0.7-10/VGAM/R/vlm.R | 46 +-
VGAM-0.7-10/VGAM/R/vlm.wfit.q | 55 +-
VGAM-0.7-10/VGAM/R/vsmooth.spline.q | 154 +++---
VGAM-0.7-10/VGAM/R/zzz.R | 2
VGAM-0.7-10/VGAM/data/backPain.R |only
VGAM-0.7-10/VGAM/data/backPain.txt |only
VGAM-0.7-10/VGAM/data/chestnz.txt |only
VGAM-0.7-10/VGAM/data/nzmarital.R |only
VGAM-0.7-10/VGAM/inst |only
VGAM-0.7-10/VGAM/man/AA.Aa.aa.Rd | 1
VGAM-0.7-10/VGAM/man/AB.Ab.aB.ab2.Rd | 1
VGAM-0.7-10/VGAM/man/ABO.Rd | 1
VGAM-0.7-10/VGAM/man/AICvlm.Rd | 8
VGAM-0.7-10/VGAM/man/BratUC.Rd | 13
VGAM-0.7-10/VGAM/man/Coef.qrrvglm-class.Rd | 4
VGAM-0.7-10/VGAM/man/Coef.qrrvglm.Rd | 6
VGAM-0.7-10/VGAM/man/CommonVGAMffArguments.Rd | 36 +
VGAM-0.7-10/VGAM/man/DeLury.Rd | 5
VGAM-0.7-10/VGAM/man/Links.Rd | 26 -
VGAM-0.7-10/VGAM/man/Opt.Rd | 14
VGAM-0.7-10/VGAM/man/SurvS4-class.Rd | 4
VGAM-0.7-10/VGAM/man/SurvS4.Rd |only
VGAM-0.7-10/VGAM/man/Tol.Rd | 16
VGAM-0.7-10/VGAM/man/VGAM-package.Rd | 42 -
VGAM-0.7-10/VGAM/man/acat.Rd | 21
VGAM-0.7-10/VGAM/man/alaplace3.Rd | 44 -
VGAM-0.7-10/VGAM/man/amh.Rd | 3
VGAM-0.7-10/VGAM/man/amlbinomial.Rd | 22
VGAM-0.7-10/VGAM/man/amlexponential.Rd | 23 -
VGAM-0.7-10/VGAM/man/amlnormal.Rd | 55 +-
VGAM-0.7-10/VGAM/man/amlpoisson.Rd | 24 -
VGAM-0.7-10/VGAM/man/auuc.Rd | 6
VGAM-0.7-10/VGAM/man/backPain.Rd |only
VGAM-0.7-10/VGAM/man/benfUC.Rd | 21
VGAM-0.7-10/VGAM/man/benini.Rd | 10
VGAM-0.7-10/VGAM/man/beniniUC.Rd | 11
VGAM-0.7-10/VGAM/man/beta.ab.Rd | 16
VGAM-0.7-10/VGAM/man/betaII.Rd | 6
VGAM-0.7-10/VGAM/man/betabin.ab.Rd | 11
VGAM-0.7-10/VGAM/man/betabinUC.Rd | 16
VGAM-0.7-10/VGAM/man/betabinomial.Rd | 19
VGAM-0.7-10/VGAM/man/betaff.Rd | 20
VGAM-0.7-10/VGAM/man/betageomUC.Rd | 5
VGAM-0.7-10/VGAM/man/betageometric.Rd | 14
VGAM-0.7-10/VGAM/man/betanormUC.Rd | 26 -
VGAM-0.7-10/VGAM/man/betaprime.Rd | 18
VGAM-0.7-10/VGAM/man/binom2.or.Rd | 19
VGAM-0.7-10/VGAM/man/binom2.orUC.Rd | 5
VGAM-0.7-10/VGAM/man/binom2.rho.Rd | 8
VGAM-0.7-10/VGAM/man/binom2.rhoUC.Rd | 2
VGAM-0.7-10/VGAM/man/binomialff.Rd | 41 +
VGAM-0.7-10/VGAM/man/bisa.Rd | 21
VGAM-0.7-10/VGAM/man/borel.tanner.Rd | 4
VGAM-0.7-10/VGAM/man/brat.Rd | 102 ++--
VGAM-0.7-10/VGAM/man/bratt.Rd | 99 ++--
VGAM-0.7-10/VGAM/man/calibrate.qrrvglm.Rd | 2
VGAM-0.7-10/VGAM/man/calibrate.qrrvglm.control.Rd | 5
VGAM-0.7-10/VGAM/man/cao.Rd | 28 -
VGAM-0.7-10/VGAM/man/cao.control.Rd | 47 --
VGAM-0.7-10/VGAM/man/cardioid.Rd | 8
VGAM-0.7-10/VGAM/man/cauchit.Rd | 10
VGAM-0.7-10/VGAM/man/cauchy.Rd | 15
VGAM-0.7-10/VGAM/man/ccoef-methods.Rd | 2
VGAM-0.7-10/VGAM/man/ccoef.Rd | 2
VGAM-0.7-10/VGAM/man/cenpoisson.Rd | 32 -
VGAM-0.7-10/VGAM/man/cgumbel.Rd | 5
VGAM-0.7-10/VGAM/man/chestnz.Rd |only
VGAM-0.7-10/VGAM/man/chisq.Rd | 6
VGAM-0.7-10/VGAM/man/cloglog.Rd | 7
VGAM-0.7-10/VGAM/man/cnormal1.Rd | 18
VGAM-0.7-10/VGAM/man/cqo.Rd | 121 -----
VGAM-0.7-10/VGAM/man/cratio.Rd | 23 -
VGAM-0.7-10/VGAM/man/cumulative.Rd | 72 ++-
VGAM-0.7-10/VGAM/man/dagum.Rd | 6
VGAM-0.7-10/VGAM/man/dcnormal1.Rd | 4
VGAM-0.7-10/VGAM/man/deplot.lmscreg.Rd | 5
VGAM-0.7-10/VGAM/man/dexpbinomial.Rd | 5
VGAM-0.7-10/VGAM/man/dirichlet.Rd | 10
VGAM-0.7-10/VGAM/man/erf.Rd | 20
VGAM-0.7-10/VGAM/man/erlang.Rd | 11
VGAM-0.7-10/VGAM/man/expexp.Rd | 6
VGAM-0.7-10/VGAM/man/expexp1.Rd | 12
VGAM-0.7-10/VGAM/man/exponential.Rd | 24 -
VGAM-0.7-10/VGAM/man/felix.Rd | 4
VGAM-0.7-10/VGAM/man/fff.Rd | 48 --
VGAM-0.7-10/VGAM/man/fgm.Rd | 3
VGAM-0.7-10/VGAM/man/fisk.Rd | 5
VGAM-0.7-10/VGAM/man/fnormal1.Rd | 14
VGAM-0.7-10/VGAM/man/frechet.Rd | 8
VGAM-0.7-10/VGAM/man/freund61.Rd | 7
VGAM-0.7-10/VGAM/man/fsqrt.Rd | 8
VGAM-0.7-10/VGAM/man/gamma1.Rd | 4
VGAM-0.7-10/VGAM/man/gamma2.Rd | 18
VGAM-0.7-10/VGAM/man/gamma2.ab.Rd | 15
VGAM-0.7-10/VGAM/man/gammahyp.Rd | 12
VGAM-0.7-10/VGAM/man/garma.Rd | 12
VGAM-0.7-10/VGAM/man/gaussianff.Rd | 16
VGAM-0.7-10/VGAM/man/genbetaII.Rd | 6
VGAM-0.7-10/VGAM/man/genpoisson.Rd | 10
VGAM-0.7-10/VGAM/man/geometric.Rd | 27 -
VGAM-0.7-10/VGAM/man/gev.Rd | 17
VGAM-0.7-10/VGAM/man/ggamma.Rd | 18
VGAM-0.7-10/VGAM/man/golf.Rd | 18
VGAM-0.7-10/VGAM/man/gpd.Rd | 43 -
VGAM-0.7-10/VGAM/man/gumbel.Rd | 22
VGAM-0.7-10/VGAM/man/gumbelIbiv.Rd | 10
VGAM-0.7-10/VGAM/man/hspider.Rd | 16
VGAM-0.7-10/VGAM/man/hzeta.Rd | 10
VGAM-0.7-10/VGAM/man/hzetaUC.Rd | 1
VGAM-0.7-10/VGAM/man/iam.Rd | 4
VGAM-0.7-10/VGAM/man/identity.Rd | 1
VGAM-0.7-10/VGAM/man/inv.gaussianff.Rd | 3
VGAM-0.7-10/VGAM/man/invparalogistic.Rd | 2
VGAM-0.7-10/VGAM/man/kumar.Rd | 15
VGAM-0.7-10/VGAM/man/laplace.Rd | 18
VGAM-0.7-10/VGAM/man/laplaceUC.Rd | 7
VGAM-0.7-10/VGAM/man/leipnik.Rd | 14
VGAM-0.7-10/VGAM/man/lerch.Rd | 5
VGAM-0.7-10/VGAM/man/levy.Rd | 13
VGAM-0.7-10/VGAM/man/lgammaUC.Rd | 4
VGAM-0.7-10/VGAM/man/lgammaff.Rd | 15
VGAM-0.7-10/VGAM/man/lino.Rd | 8
VGAM-0.7-10/VGAM/man/linoUC.Rd | 4
VGAM-0.7-10/VGAM/man/lirat.Rd | 3
VGAM-0.7-10/VGAM/man/lms.bcg.Rd | 20
VGAM-0.7-10/VGAM/man/lms.bcn.Rd | 20
VGAM-0.7-10/VGAM/man/lms.yjn.Rd | 15
VGAM-0.7-10/VGAM/man/logUC.Rd | 3
VGAM-0.7-10/VGAM/man/logff.Rd | 30 -
VGAM-0.7-10/VGAM/man/logistic.Rd | 14
VGAM-0.7-10/VGAM/man/logit.Rd | 8
VGAM-0.7-10/VGAM/man/loglapUC.Rd | 2
VGAM-0.7-10/VGAM/man/loglaplace.Rd | 3
VGAM-0.7-10/VGAM/man/loglinb2.Rd | 11
VGAM-0.7-10/VGAM/man/loglinb3.Rd | 3
VGAM-0.7-10/VGAM/man/loglog.Rd | 1
VGAM-0.7-10/VGAM/man/lognormal.Rd | 16
VGAM-0.7-10/VGAM/man/logoff.Rd | 5
VGAM-0.7-10/VGAM/man/lomax.Rd | 10
VGAM-0.7-10/VGAM/man/lqnorm.Rd | 19
VGAM-0.7-10/VGAM/man/lv.Rd | 8
VGAM-0.7-10/VGAM/man/lvplot.qrrvglm.Rd | 50 +-
VGAM-0.7-10/VGAM/man/lvplot.rrvglm.Rd | 11
VGAM-0.7-10/VGAM/man/maxwell.Rd | 5
VGAM-0.7-10/VGAM/man/maxwellUC.Rd |only
VGAM-0.7-10/VGAM/man/mccullagh89.Rd | 8
VGAM-0.7-10/VGAM/man/mckaygamma2.Rd | 6
VGAM-0.7-10/VGAM/man/micmen.Rd | 5
VGAM-0.7-10/VGAM/man/mix2exp.Rd | 22
VGAM-0.7-10/VGAM/man/mix2normal1.Rd | 22
VGAM-0.7-10/VGAM/man/mix2poisson.Rd | 22
VGAM-0.7-10/VGAM/man/multinomial.Rd | 47 +-
VGAM-0.7-10/VGAM/man/negbinomial.Rd | 31 -
VGAM-0.7-10/VGAM/man/normal1.Rd | 14
VGAM-0.7-10/VGAM/man/nzmarital.Rd |only
VGAM-0.7-10/VGAM/man/paralogistic.Rd | 12
VGAM-0.7-10/VGAM/man/pareto1.Rd | 13
VGAM-0.7-10/VGAM/man/paretoIV.Rd | 6
VGAM-0.7-10/VGAM/man/persp.qrrvglm.Rd | 12
VGAM-0.7-10/VGAM/man/plackUC.Rd | 9
VGAM-0.7-10/VGAM/man/plotdeplot.lmscreg.Rd | 3
VGAM-0.7-10/VGAM/man/plotqtplot.lmscreg.Rd | 2
VGAM-0.7-10/VGAM/man/plotvgam.Rd | 11
VGAM-0.7-10/VGAM/man/plotvgam.control.Rd | 14
VGAM-0.7-10/VGAM/man/pneumo.Rd | 3
VGAM-0.7-10/VGAM/man/poissonff.Rd | 32 -
VGAM-0.7-10/VGAM/man/poissonp.Rd | 13
VGAM-0.7-10/VGAM/man/polf.Rd | 33 -
VGAM-0.7-10/VGAM/man/polonoUC.Rd | 6
VGAM-0.7-10/VGAM/man/posbinomUC.Rd | 11
VGAM-0.7-10/VGAM/man/posbinomial.Rd | 25 -
VGAM-0.7-10/VGAM/man/posnegbinUC.Rd | 3
VGAM-0.7-10/VGAM/man/posnegbinomial.Rd | 49 +-
VGAM-0.7-10/VGAM/man/posnormUC.Rd | 3
VGAM-0.7-10/VGAM/man/posnormal1.Rd | 15
VGAM-0.7-10/VGAM/man/pospoisUC.Rd | 10
VGAM-0.7-10/VGAM/man/pospoisson.Rd | 19
VGAM-0.7-10/VGAM/man/powl.Rd | 5
VGAM-0.7-10/VGAM/man/predict.qrrvglm.Rd | 16
VGAM-0.7-10/VGAM/man/predict.vglm.Rd | 6
VGAM-0.7-10/VGAM/man/prentice74.Rd | 36 -
VGAM-0.7-10/VGAM/man/probit.Rd | 3
VGAM-0.7-10/VGAM/man/propodds.Rd |only
VGAM-0.7-10/VGAM/man/prplot.Rd |only
VGAM-0.7-10/VGAM/man/qrrvglm.control.Rd | 74 ---
VGAM-0.7-10/VGAM/man/qtplot.gumbel.Rd | 2
VGAM-0.7-10/VGAM/man/qtplot.lmscreg.Rd | 2
VGAM-0.7-10/VGAM/man/rcqo.Rd | 39 -
VGAM-0.7-10/VGAM/man/recexp1.Rd | 2
VGAM-0.7-10/VGAM/man/reciprocal.Rd | 1
VGAM-0.7-10/VGAM/man/recnormal1.Rd | 2
VGAM-0.7-10/VGAM/man/rhobit.Rd | 1
VGAM-0.7-10/VGAM/man/riceff.Rd | 6
VGAM-0.7-10/VGAM/man/rig.Rd | 8
VGAM-0.7-10/VGAM/man/rlplot.egev.Rd | 2
VGAM-0.7-10/VGAM/man/rrvglm.control.Rd | 4
VGAM-0.7-10/VGAM/man/s.Rd | 60 +-
VGAM-0.7-10/VGAM/man/simplex.Rd | 3
VGAM-0.7-10/VGAM/man/sinmad.Rd | 6
VGAM-0.7-10/VGAM/man/skellam.Rd | 16
VGAM-0.7-10/VGAM/man/skellamUC.Rd | 2
VGAM-0.7-10/VGAM/man/skewnormal1.Rd | 21
VGAM-0.7-10/VGAM/man/slash.Rd | 4
VGAM-0.7-10/VGAM/man/slashUC.Rd | 13
VGAM-0.7-10/VGAM/man/smartpred.Rd | 2
VGAM-0.7-10/VGAM/man/snormUC.Rd | 2
VGAM-0.7-10/VGAM/man/sratio.Rd | 18
VGAM-0.7-10/VGAM/man/studentt.Rd | 9
VGAM-0.7-10/VGAM/man/tikuv.Rd | 3
VGAM-0.7-10/VGAM/man/tobit.Rd | 28 -
VGAM-0.7-10/VGAM/man/trplot.qrrvglm.Rd | 8
VGAM-0.7-10/VGAM/man/undocumented-methods.Rd | 2
VGAM-0.7-10/VGAM/man/uqo.Rd | 6
VGAM-0.7-10/VGAM/man/uqo.control.Rd | 2
VGAM-0.7-10/VGAM/man/vgam.Rd | 9
VGAM-0.7-10/VGAM/man/vgam.control.Rd | 51 +-
VGAM-0.7-10/VGAM/man/vglm.Rd | 10
VGAM-0.7-10/VGAM/man/vglm.control.Rd | 12
VGAM-0.7-10/VGAM/man/vonmises.Rd | 10
VGAM-0.7-10/VGAM/man/vsmooth.spline.Rd | 57 +-
VGAM-0.7-10/VGAM/man/wald.Rd | 8
VGAM-0.7-10/VGAM/man/weibull.Rd | 4
VGAM-0.7-10/VGAM/man/wffc.P2star.Rd | 7
VGAM-0.7-10/VGAM/man/wffc.Rd | 27 -
VGAM-0.7-10/VGAM/man/wffc.indiv.Rd | 5
VGAM-0.7-10/VGAM/man/wffc.nc.Rd | 10
VGAM-0.7-10/VGAM/man/wffc.teams.Rd | 9
VGAM-0.7-10/VGAM/man/yeo.johnson.Rd | 22
VGAM-0.7-10/VGAM/man/yulesimon.Rd | 8
VGAM-0.7-10/VGAM/man/zanegbinUC.Rd | 13
VGAM-0.7-10/VGAM/man/zanegbinomial.Rd | 18
VGAM-0.7-10/VGAM/man/zapoisUC.Rd | 16
VGAM-0.7-10/VGAM/man/zapoisson.Rd | 24 -
VGAM-0.7-10/VGAM/man/zero.Rd | 4
VGAM-0.7-10/VGAM/man/zeta.Rd | 32 -
VGAM-0.7-10/VGAM/man/zetaUC.Rd | 6
VGAM-0.7-10/VGAM/man/zetaff.Rd | 34 -
VGAM-0.7-10/VGAM/man/zibinomUC.Rd | 7
VGAM-0.7-10/VGAM/man/zibinomial.Rd | 8
VGAM-0.7-10/VGAM/man/zinegbinUC.Rd | 7
VGAM-0.7-10/VGAM/man/zinegbinomial.Rd | 31 -
VGAM-0.7-10/VGAM/man/zipebcom.Rd | 14
VGAM-0.7-10/VGAM/man/zipf.Rd | 9
VGAM-0.7-10/VGAM/man/zipfUC.Rd | 7
VGAM-0.7-10/VGAM/man/zipoisUC.Rd | 11
VGAM-0.7-10/VGAM/man/zipoisson.Rd | 46 --
VGAM-0.7-10/VGAM/src/cqof.f | 449 +++++++++++---------
VGAM-0.7-10/VGAM/src/fgam.f | 15
VGAM-0.7-10/VGAM/src/lms.f | 2
VGAM-0.7-10/VGAM/src/rgam.f | 5
VGAM-0.7-10/VGAM/src/tyeepolygamma.f | 12
VGAM-0.7-10/VGAM/src/vmux.f | 3
VGAM-0.7-10/VGAM/src/zeta4.c |only
VGAM-0.7-9/VGAM/R/family.aunivariate.q |only
VGAM-0.7-9/VGAM/R/family.basics.q |only
VGAM-0.7-9/VGAM/R/family.binomial.q |only
VGAM-0.7-9/VGAM/R/family.bivariate.q |only
VGAM-0.7-9/VGAM/R/family.categorical.q |only
VGAM-0.7-9/VGAM/R/family.censored.q |only
VGAM-0.7-9/VGAM/R/family.circular.q |only
VGAM-0.7-9/VGAM/R/family.extremes.q |only
VGAM-0.7-9/VGAM/R/family.fishing.q |only
VGAM-0.7-9/VGAM/R/family.functions.q |only
VGAM-0.7-9/VGAM/R/family.genetic.q |only
VGAM-0.7-9/VGAM/R/family.glmgam.q |only
VGAM-0.7-9/VGAM/R/family.loglin.q |only
VGAM-0.7-9/VGAM/R/family.mixture.q |only
VGAM-0.7-9/VGAM/R/family.nonlinear.q |only
VGAM-0.7-9/VGAM/R/family.normal.q |only
VGAM-0.7-9/VGAM/R/family.positive.q |only
VGAM-0.7-9/VGAM/R/family.qreg.q |only
VGAM-0.7-9/VGAM/R/family.rcqo.q |only
VGAM-0.7-9/VGAM/R/family.rrr.q |only
VGAM-0.7-9/VGAM/R/family.survival.q |only
VGAM-0.7-9/VGAM/R/family.ts.q |only
VGAM-0.7-9/VGAM/R/family.univariate.q |only
VGAM-0.7-9/VGAM/R/family.vglm.q |only
VGAM-0.7-9/VGAM/R/family.zeroinf.q |only
VGAM-0.7-9/VGAM/R/fitted.vlm.q |only
VGAM-0.7-9/VGAM/data/chest.txt |only
VGAM-0.7-9/VGAM/man/MaxwellUC.Rd |only
VGAM-0.7-9/VGAM/man/Surv.Rd |only
VGAM-0.7-9/VGAM/man/chest.Rd |only
VGAM-0.7-9/VGAM/src/zeta.f |only
360 files changed, 4229 insertions(+), 4067 deletions(-)
Title: Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
Diff between hopach versions 2.6.0 dated 2009-11-13 and 2.7.1 dated 2010-01-05
Description: The HOPACH clustering algorithm builds a hierarchical tree
of clusters by recursively partitioning a data set, while
ordering and possibly collapsing clusters at each level. The
algorithm uses the Mean/Median Split Silhouette (MSS) criteria
to identify the level of the tree with maximally homogeneous
clusters. It also runs the tree down to produce a final ordered
list of the elements. The non-parametric bootstrap allows one
to estimate the probability that each element belongs to each
cluster (fuzzy clustering).
Author: Katherine S. Pollard, with Mark J. van der Laan
Maintainer: Katherine S. Pollard
DESCRIPTION | 6
R/hdistClass.R | 6
inst/doc/hopach.pdf | 416 +++++++++++++++++++++++++---------------------------
3 files changed, 213 insertions(+), 215 deletions(-)
Title: Mesh generation and surface tesselation
Diff between geometry versions 0.1-4 dated 2008-09-19 and 0.1-5 dated 2010-01-05
Description: This package makes the qhull library (www.qhull.org)
available in R, in a similar manner as in Octave and MATLAB.
Qhull computes convex hulls, Delaunay triangulations, halfspace
intersections about a point, Voronoi diagrams, furthest-site
Delaunay triangulations, and furthest-site Voronoi diagrams. It
runs in 2-d, 3-d, 4-d, and higher dimensions. It implements the
Quickhull algorithm for computing the convex hull. Qhull does
not support constrained Delaunay triangulations, or mesh
generation of non-convex objects, but the package does include
some R functions that allow for this. Currently the package
only gives access to Delaunay triangulation and convex hull
computation.
Author: Raoul Grasman and Robert B. Gramacy
Maintainer: Robert B. Gramacy
geometry-0.1-4/geometry/src/src |only
geometry-0.1-5/geometry/DESCRIPTION | 45 ++++++++++++++++-------------
geometry-0.1-5/geometry/man/entry.value.Rd | 2 -
3 files changed, 26 insertions(+), 21 deletions(-)
Title: Toolkit implementation of gWidgets for RGtk2
Diff between gWidgetsRGtk2 versions 0.0-57 dated 2009-12-20 and 0.0-58 dated 2010-01-05
Description: Port of gWidgets API to RGtk2
Author: Michael Lawrence, John Verzani
Maintainer: John Verzani
ChangeLog | 21 ++++++++++++++
DESCRIPTION | 6 ++--
NAMESPACE | 3 +-
NEWS | 12 ++++++++
R/aaaGenerics.R | 45 ++++++++++++++++++++++++++----
R/gedit.R | 10 ++++--
R/ggrid.R | 63 ++++++++++++++++++++++++++++++-------------
R/gnotebook.R | 2 -
TODO.txt | 4 ++
man/gWidgetsRGtk2-package.Rd | 4 +-
10 files changed, 136 insertions(+), 34 deletions(-)
Title: Dendrochronology Program Library in R
Diff between dplR versions 1.2.2 dated 2009-12-09 and 1.2.3 dated 2010-01-05
Description: This package contains functions for performing some
standard tree-ring analyses.
Author: Andy Bunn
Maintainer: Andy Bunn
DESCRIPTION | 8 +++----
NAMESPACE | 2 -
R/cms.R | 4 +--
R/spag.plot.R |only
R/write.rwl.R | 59 +++++++++++++++++++++++++++++++++++++++++++++++++------
man/rcs.Rd | 4 +--
man/seg.plot.Rd | 7 ++----
man/spag.plot.Rd |only
man/write.rwl.Rd | 2 -
9 files changed, 66 insertions(+), 20 deletions(-)
Title: A Package for Medical Image Analysis (S4 implementation)
Diff between dcemriS4 versions 0.20.1 dated 2009-12-28 and 0.20.2 dated 2010-01-05
Description: A collection of routines and documentation that allows one
to perform a quantitative analysis of dynamic contrast-enhanced
or diffusion-weighted MRI data. Medical imaging data should be
organized using either the Analyze or NIfTI data formats.
Author: Brandon Whitcher and Volker Schmid, with contributions from
Andrew Thornton
Maintainer: Brandon Whitcher
DESCRIPTION | 8 -
R/auditTrail.R | 8 -
R/dcemri_bayes.R | 33 ++--
R/dcemri_lm.R | 245 ++++++++++++++++++++---------------
inst/doc/dcemriS4.pdf |binary
man/dce_bayes.Rd | 8 -
man/dcemri.Rd | 60 ++++++--
tests/Examples/dcemriS4-Ex.Rout.save | 100 +++++++++-----
8 files changed, 290 insertions(+), 172 deletions(-)