Title: Mesh generation and surface tesselation
Diff between geometry versions 0.1-6 dated 2010-01-08 and 0.1-7 dated 2010-01-10
Description: This package makes the qhull library (www.qhull.org)
available in R, in a similar manner as in Octave and MATLAB.
Qhull computes convex hulls, Delaunay triangulations, halfspace
intersections about a point, Voronoi diagrams, furthest-site
Delaunay triangulations, and furthest-site Voronoi diagrams. It
runs in 2-d, 3-d, 4-d, and higher dimensions. It implements the
Quickhull algorithm for computing the convex hull. Qhull does
not support constrained Delaunay triangulations, or mesh
generation of non-convex objects, but the package does include
some R functions that allow for this. Currently the package
only gives access to Delaunay triangulation and convex hull
computation.
Author: Raoul Grasman and Robert B. Gramacy
Maintainer: Robert B. Gramacy
DESCRIPTION | 8 ++++----
configure | 29 +++++++++++++++++------------
configure.ac | 30 ++++++++++++++++--------------
src/Makevars.in | 2 +-
4 files changed, 38 insertions(+), 31 deletions(-)
Title: Urn : Sampling Without Replacement
Diff between urn versions 1.2 dated 2006-09-13 and 2.1 dated 2010-01-10
Description: Functions for sampling without replacement. (Simulated
Urns).
Author: Micah Altman
Maintainer: Micah Altman
CHANGELOG | 12
COPYING |only
DESCRIPTION | 27 -
LICENSE | 1011 +++++++++++++++++++++++++++++++++++------------------
NAMESPACE | 6
R/urnfuncs.R | 76 ++-
R/zzz.R | 9
inst/CITATION | 8
man/urn.Rd | 31 -
man/urn.package.Rd |only
10 files changed, 786 insertions(+), 394 deletions(-)
Title: A graphical user interface for data mining in R using GTK
Diff between rattle versions 2.5.12 dated 2009-12-17 and 2.5.14 dated 2010-01-10
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab
and so available to the user as a script file or as an aide to
the user to interact directly with R itself. Rattle also
exports a number of utility functions and the graphical user
interface, invoked as rattle(), does not need to be run to
deploy these.
Author: Graham Williams
Maintainer: Graham Williams
CITATION | 21
DESCRIPTION | 8
R/ada.R | 75 -
R/ada_gui.R | 45
R/associate.R | 76 -
R/cluster.R | 12
R/ctree.R | 14
R/data.R | 172 +-
R/evaluate.R | 29
R/hclust.R | 13
R/kmeans.R | 633 +++++----
R/log.R | 2
R/model.R | 92 -
R/projects.R | 7
R/random_forest.R | 401 +++--
R/rattle.R | 221 ++-
R/report.R | 4
R/rpart.R | 177 +-
R/survival.R | 5
R/textminer.R | 4
R/transform.R | 4
R/zzz.R | 10
data/audit.RData |binary
data/weather.RData |binary
data/weatherCanberra.RData |binary
data/weatherSydney.RData |binary
inst/arff/weather.arff | 4
inst/arff/weatherCanberra.arff | 65
inst/arff/weatherSydney.arff | 69 -
inst/csv/weatherCanberra.csv | 61
inst/csv/weatherSydney.csv | 61
inst/etc/rattle.glade | 260 ++-
inst/po/id/LC_MESSAGES/R-rattle.mo |binary
inst/po/ja/LC_MESSAGES/R-rattle.mo |binary
inst/po/zh_CN/LC_MESSAGES/R-rattle.mo |binary
man/internal.Rd | 2
po/Makefile | 26
po/R-id.po | 6
po/R-ja.po | 2298 +++++++++++++++++++++++++++++++++-
po/R-ja.po.091221 |only
po/R-ja.po.091222 |only
po/R-ja.po.091223 |only
po/R-ja.poh |only
po/R-ja.poi |only
po/R-ja.poi.091223072033 |only
po/R-ja.poi.091223072546 |only
po/R-ja.poi.091223072735 |only
po/R-ja.poi.091223101117 |only
po/R-ja.poi.091223H1328 |only
po/R-ja.poi.091223H1706 |only
po/R-ja.poi.091224095345 |only
po/R-ja.poi.100109093641 |only
po/R-ja.poi.100109151122 |only
po/R-ja.poi.100109151915 |only
po/R-ja.poi.100109152051 |only
po/R-zh_CN.po | 175 ++
po/messages.pot |only
po/new.po |only
po/new.poi |only
po/test.po |only
po/test.pot |only
61 files changed, 4106 insertions(+), 946 deletions(-)
Title: Generalized Method of Moments and Generalized Empirical
Likelihood
Diff between gmm versions 1.1-1 dated 2009-09-07 and 1.3-0 dated 2010-01-10
Description: It is a complete suite to estimate models based on moment
conditions. It includes the two step Generalized method of
moments (GMM) of Hansen(1982), the iterated GMM and continuous
updated estimator (CUE) of Hansen-Eaton-Yaron(1996) and several
methods that belong to the Generalized Empirical Likelihood
(GEL) family of estimators, as presented by Smith(1997),
Kitamura(1997), Newey-Smith(2004) and Anatolyev(2005).
Author: Pierre Chausse
Maintainer: Pierre Chausse
gmm-1.1-1/gmm/R/gel_tools.R |only
gmm-1.1-1/gmm/R/gmm_tools.R |only
gmm-1.1-1/gmm/R/plot.gmm.R |only
gmm-1.1-1/gmm/man/coef.gel.Rd |only
gmm-1.1-1/gmm/man/coef.gmm.Rd |only
gmm-1.1-1/gmm/man/confint.gel.Rd |only
gmm-1.1-1/gmm/man/confint.gmm.Rd |only
gmm-1.1-1/gmm/man/fitted.gel.Rd |only
gmm-1.1-1/gmm/man/fitted.gmm.Rd |only
gmm-1.1-1/gmm/man/formula.gel.Rd |only
gmm-1.1-1/gmm/man/formula.gmm.Rd |only
gmm-1.1-1/gmm/man/get_dat.Rd |only
gmm-1.1-1/gmm/man/get_lamb.Rd |only
gmm-1.1-1/gmm/man/plot.gel.Rd |only
gmm-1.1-1/gmm/man/plot.gmm.Rd |only
gmm-1.1-1/gmm/man/print.gel.Rd |only
gmm-1.1-1/gmm/man/print.gmm.Rd |only
gmm-1.1-1/gmm/man/print.summary.gel.Rd |only
gmm-1.1-1/gmm/man/print.summary.gmm.Rd |only
gmm-1.1-1/gmm/man/residuals.gel.Rd |only
gmm-1.1-1/gmm/man/residuals.gmm.Rd |only
gmm-1.1-1/gmm/man/smooth_g.Rd |only
gmm-1.1-1/gmm/man/summary.gel.Rd |only
gmm-1.1-1/gmm/man/summary.gmm.Rd |only
gmm-1.1-1/gmm/man/vcov.gel.Rd |only
gmm-1.1-1/gmm/man/vcov.gmm.Rd |only
gmm-1.3-0/gmm/DESCRIPTION | 10
gmm-1.3-0/gmm/NAMESPACE | 24
gmm-1.3-0/gmm/NEWS | 23
gmm-1.3-0/gmm/R/FinRes.R |only
gmm-1.3-0/gmm/R/HAC.R |only
gmm-1.3-0/gmm/R/Methods.gel.R |only
gmm-1.3-0/gmm/R/Methods.gmm.R |only
gmm-1.3-0/gmm/R/PlotMethods.R |only
gmm-1.3-0/gmm/R/charStable.R |only
gmm-1.3-0/gmm/R/gel.R | 398 -
gmm-1.3-0/gmm/R/getModel.R |only
gmm-1.3-0/gmm/R/gmm.R | 465 --
gmm-1.3-0/gmm/R/momentEstim.R |only
gmm-1.3-0/gmm/R/specTest.R |only
gmm-1.3-0/gmm/inst/doc/empir.bib | 197
gmm-1.3-0/gmm/inst/doc/gmm_with_R.pdf | 7481 ++++++++++++++++++---------------
gmm-1.3-0/gmm/inst/doc/gmm_with_R.rnw | 184
gmm-1.3-0/gmm/man/FinRes.Rd |only
gmm-1.3-0/gmm/man/Finance.Rd | 50
gmm-1.3-0/gmm/man/HAC.Rd | 8
gmm-1.3-0/gmm/man/charStable.Rd | 8
gmm-1.3-0/gmm/man/coef.Rd |only
gmm-1.3-0/gmm/man/confint.Rd |only
gmm-1.3-0/gmm/man/fitted.Rd |only
gmm-1.3-0/gmm/man/formula.Rd |only
gmm-1.3-0/gmm/man/gel.Rd | 51
gmm-1.3-0/gmm/man/getDat.Rd |only
gmm-1.3-0/gmm/man/getLamb.Rd |only
gmm-1.3-0/gmm/man/getModel.Rd |only
gmm-1.3-0/gmm/man/gmm.Rd | 54
gmm-1.3-0/gmm/man/momentEstim.Rd |only
gmm-1.3-0/gmm/man/plot.Rd |only
gmm-1.3-0/gmm/man/print.Rd |only
gmm-1.3-0/gmm/man/residuals.Rd |only
gmm-1.3-0/gmm/man/rho.Rd | 8
gmm-1.3-0/gmm/man/smoothG.Rd |only
gmm-1.3-0/gmm/man/specTest.Rd |only
gmm-1.3-0/gmm/man/summary.Rd |only
gmm-1.3-0/gmm/man/vcov.Rd |only
gmm-1.3-0/gmm/man/weightsAndrews2.Rd | 10
66 files changed, 4756 insertions(+), 4215 deletions(-)
Title: Multilevel B-spline Approximation
Diff between MBA versions 0.0-6 dated 2009-06-17 and 0.0-7 dated 2010-01-10
Description: Scattered data interpolation with Multilevel B-Splines
Author: Andrew O. Finley
Maintainer: Andrew O. Finley
DESCRIPTION | 8 ++++----
R/mba.surf.R | 24 +++++++++++++++++++++---
man/mba.points.Rd | 2 +-
man/mba.surf.Rd | 11 +++++++----
src/MBASurf.cpp | 5 ++++-
5 files changed, 37 insertions(+), 13 deletions(-)
Title: Analysis of skewed data by Lambert W random variables.
Diff between LambertW versions 0.1.8 dated 2009-12-29 and 0.1.9 dated 2010-01-10
Description: Lambert W random variables (RV) offer a new way of dealing
with slightly skewed data. It is based on an input/ouput
framework - for details see References. This package contains
the most important functions to perform an adequate analysis.
Lambert W data can be simulated, parameters estimated, and
results plotted in a "nice" way.Quantile functions allow a more
realistic analysis and inference of skewed data (see
References).
Author: Georg M. Goerg
Maintainer: Georg M. Goerg
LambertW-0.1.8/LambertW/R/mom.LambertW.U.Gauss.R |only
LambertW-0.1.8/LambertW/R/mom.LambertW.X.Gauss.R |only
LambertW-0.1.8/LambertW/man/mom.LambertW.X.Gauss.Rd |only
LambertW-0.1.9/LambertW/DESCRIPTION | 21 +--
LambertW-0.1.9/LambertW/R/IGMM.default.R | 18 +-
LambertW-0.1.9/LambertW/R/MLE_LambertW.R | 2
LambertW-0.1.9/LambertW/R/MLE_LambertW.default.R | 121 +++++++-------------
LambertW-0.1.9/LambertW/R/delta.01.R | 6
LambertW-0.1.9/LambertW/R/delta.GMM.R | 6
LambertW-0.1.9/LambertW/R/get.input.R | 7 -
LambertW-0.1.9/LambertW/R/igmm.r | 6
LambertW-0.1.9/LambertW/R/mLambertW.R |only
LambertW-0.1.9/LambertW/R/mc.R | 2
LambertW-0.1.9/LambertW/R/normfit.R | 7 -
LambertW-0.1.9/LambertW/R/p_1.R | 34 +++--
LambertW-0.1.9/LambertW/R/plot.LWest.R | 2
LambertW-0.1.9/LambertW/R/print.LWest.R |only
LambertW-0.1.9/LambertW/R/print.summary.LWest.R | 5
LambertW-0.1.9/LambertW/R/rLambertW.R | 8 -
LambertW-0.1.9/LambertW/R/sd.R | 2
LambertW-0.1.9/LambertW/R/summary.LWest.R | 65 +++++-----
LambertW-0.1.9/LambertW/man/AA.Rd | 34 -----
LambertW-0.1.9/LambertW/man/H.Rd | 4
LambertW-0.1.9/LambertW/man/H_delta.Rd | 6
LambertW-0.1.9/LambertW/man/IGMM.Rd | 31 ++---
LambertW-0.1.9/LambertW/man/LWest-methods.Rd | 22 ++-
LambertW-0.1.9/LambertW/man/LambertW-methods.Rd | 103 ++++++++++++-----
LambertW-0.1.9/LambertW/man/LambertW-package.Rd | 45 ++-----
LambertW-0.1.9/LambertW/man/MLE_LambertW.Rd | 12 +
LambertW-0.1.9/LambertW/man/W.Rd | 7 -
LambertW-0.1.9/LambertW/man/W_delta.Rd | 4
LambertW-0.1.9/LambertW/man/delta.01.Rd | 17 +-
LambertW-0.1.9/LambertW/man/delta.GMM.Rd | 21 +--
LambertW-0.1.9/LambertW/man/get.input.Rd | 16 +-
LambertW-0.1.9/LambertW/man/ks.test.t.Rd | 13 +-
LambertW-0.1.9/LambertW/man/mc.Rd | 50 ++++++--
LambertW-0.1.9/LambertW/man/normfit.Rd | 22 +--
LambertW-0.1.9/LambertW/man/p_1.Rd | 42 ++++--
LambertW-0.1.9/LambertW/man/sd.Rd | 5
LambertW-0.1.9/LambertW/man/support.Rd | 4
LambertW-0.1.9/LambertW/man/vec.norm.Rd | 21 ++-
41 files changed, 432 insertions(+), 359 deletions(-)
Title: Analyzing case-parent triad and/or case-control data with SNP
haplotypes
Diff between Haplin versions 3.0.1 dated 2009-05-27 and 3.0.2 dated 2010-01-10
Description: Haplin performs a genetic association analysis of
case-parent triad (trio) data with multiple markers. It can
also incorporate complete or incomplete control triads, for
instance independent control children. Estimation is based on
haplotypes, for instance SNP haplotypes, even though phase is
not known from the genetic data. Haplin estimates relative risk
(RR + conf.int.) and p-value associated with each haplotype. It
uses maximum likelihood estimation to make optimal use of data
from triads with missing genotypic data, for instance if some
SNPs has not been typed for some individuals. Haplin also
allows estimation of effects of maternal haplotypes,
particularly appropriate in perinatal epidemiology.
Author: Hakon K. Gjessing
Maintainer: Hakon K. Gjessing
Haplin-3.0.1/Haplin/R/f.expand.data.q |only
Haplin-3.0.1/Haplin/R/f.slide.R |only
Haplin-3.0.1/Haplin/R/f.transmit.to.triad.r |only
Haplin-3.0.2/Haplin/DESCRIPTION | 13
Haplin-3.0.2/Haplin/NAMESPACE | 1
Haplin-3.0.2/Haplin/R/f.EM.missing.q | 15
Haplin-3.0.2/Haplin/R/f.HWE.design.q | 9
Haplin-3.0.2/Haplin/R/f.check.pars.R | 176 +++---
Haplin-3.0.2/Haplin/R/f.compute.effects.q | 3
Haplin-3.0.2/Haplin/R/f.data.R |only
Haplin-3.0.2/Haplin/R/f.final.loglike.q | 28
Haplin-3.0.2/Haplin/R/f.groupsum.q | 44 -
Haplin-3.0.2/Haplin/R/f.haptable.list.R |only
Haplin-3.0.2/Haplin/R/f.jackknife.q | 100 +--
Haplin-3.0.2/Haplin/R/f.like.ratio.R |only
Haplin-3.0.2/Haplin/R/f.make.design.R |only
Haplin-3.0.2/Haplin/R/f.pos.match.R |only
Haplin-3.0.2/Haplin/R/f.preliminary.freq.q | 40 -
Haplin-3.0.2/Haplin/R/f.prep.data.q | 451 ++-------------
Haplin-3.0.2/Haplin/R/f.read.data.r | 422 ++++++--------
Haplin-3.0.2/Haplin/R/f.redistribute.q | 46 -
Haplin-3.0.2/Haplin/R/f.repl.thin.q | 2
Haplin-3.0.2/Haplin/R/f.scoretest.R |only
Haplin-3.0.2/Haplin/R/f.sep.data.R | 95 +--
Haplin-3.0.2/Haplin/R/f.sort.alleles.q | 86 +-
Haplin-3.0.2/Haplin/R/f.suest.R |only
Haplin-3.0.2/Haplin/R/f.tri.glm.q | 395 +++++++------
Haplin-3.0.2/Haplin/R/f.var.covar.q | 87 +-
Haplin-3.0.2/Haplin/R/f.windows.R |only
Haplin-3.0.2/Haplin/R/haplin.q | 703 ++++++++----------------
Haplin-3.0.2/Haplin/R/haplinSlide.R |only
Haplin-3.0.2/Haplin/R/haplinStrat.R | 317 ++++------
Haplin-3.0.2/Haplin/R/haptable.haplin.R | 109 +--
Haplin-3.0.2/Haplin/R/haptable.haplinSlide.R |only
Haplin-3.0.2/Haplin/R/haptable.haplinStrat.R | 19
Haplin-3.0.2/Haplin/R/pedToHaplin.R | 421 +++++++-------
Haplin-3.0.2/Haplin/R/print.info.R |only
Haplin-3.0.2/Haplin/R/print.suest.R |only
Haplin-3.0.2/Haplin/R/print.summary.haplin.q | 8
Haplin-3.0.2/Haplin/R/suest.R |only
Haplin-3.0.2/Haplin/man/haplin.Rd | 261 ++++----
Haplin-3.0.2/Haplin/man/pedToHaplin.Rd | 6
Haplin-3.0.2/Haplin/man/plot.haplin.Rd | 6
Haplin-3.0.2/Haplin/man/print.haplin.Rd | 2
Haplin-3.0.2/Haplin/man/print.summary.haplin.Rd | 2
Haplin-3.0.2/Haplin/man/summary.haplin.Rd | 2
46 files changed, 1682 insertions(+), 2187 deletions(-)