Title: An interface for creating GUIs modeled in part after traits UI
module for python.
Diff between traitr versions 0.4 dated 2010-02-03 and 0.5 dated 2010-02-05
Description: An interface for creating GUIs modeled in part after the
traits UI module for python. The basic design takes advantage
of the model-view-controller design pattern. The interface
makes basic dialogs quite easy to produce.
Author: John Verzani
Maintainer: John Verzani
ChangeLog | 5 +++++
DESCRIPTION | 6 +++---
NEWS | 8 ++++++++
R/items.R | 13 +++++++++----
inst/doc/traitr.pdf |binary
man/choiceItem.Rd | 4 ++--
6 files changed, 27 insertions(+), 9 deletions(-)
Title: Racing methods for the selection of the best
Diff between race versions 0.1.56 dated 2005-04-01 and 0.1.58 dated 2010-02-05
Description: Implementation of some racing methods for the empirical
selection of the best. If the R package `rpvm' is installed
(and if PVM is available, properly configured, and
initialized), the evaluation of the candidates are performed in
parallel on different hosts.
Author: Mauro Birattari
Maintainer: Mauro Birattari
race-0.1.56/race/INDEX |only
race-0.1.56/race/TODO |only
race-0.1.56/race/debian |only
race-0.1.58/race/DESCRIPTION | 19 +++++++++++--------
race-0.1.58/race/R/race.R | 8 ++++----
race-0.1.58/race/inst/examples/example-wrapper.R | 2 --
race-0.1.58/race/inst/slave/srace.sh | 2 --
race-0.1.58/race/man/race.Rd | 2 --
race-0.1.58/race/man/race.describe.Rd | 18 ++++++------------
race-0.1.58/race/man/race.info.Rd | 16 +++++-----------
race-0.1.58/race/man/race.init.Rd | 20 +++++++-------------
race-0.1.58/race/man/race.wrapper.Rd | 15 +++++----------
12 files changed, 38 insertions(+), 64 deletions(-)
Title: Dive analysis and calibration
Diff between diveMove versions 0.9.6 dated 2009-10-21 and 0.9.7 dated 2010-02-05
Description: Utilities to represent, visualize, filter, analyse, and
summarize time-depth recorder (TDR) data. Miscellaneous
functions for handling location data are also provided.
Author: Sebastian P. Luque
Maintainer: Sebastian P. Luque
ChangeLog | 45
DESCRIPTION | 15
NAMESPACE | 2
R/AllClass.R | 2
R/AllGenerics.R | 2
R/AllMethod.R | 2
R/austFilter.R | 2
R/bouts.R | 2
R/calibrate.R | 2
R/detDive.R | 2
R/detPhase.R | 2
R/distSpeed.R | 2
R/diveStats.R | 2
R/oneDiveStats.R | 2
R/plotTD.R | 2
R/readLocs.R | 2
R/readTDR.R | 12
R/speedStats.R | 2
R/stampDive.R | 2
R/zoc.R | 2
R/zzz.R | 2
README | 9
data/dives.csv |68400 +++++++++++++++++++++---------------------
data/sealLocs.csv | 740
inst/doc/Makefile | 2
inst/doc/diveMove.Rnw | 14
inst/doc/diveMove.pdf | 6279 ++-
man/TDR-accessors.Rd | 2
man/TDR-class.Rd | 2
man/TDRcalibrate-accessors.Rd | 2
man/TDRcalibrate-class.Rd | 2
man/austFilter.Rd | 4
man/bout-methods.Rd | 2
man/bout-misc.Rd | 2
man/bouts2MLE.Rd | 2
man/bouts2NLS.Rd | 2
man/calibrateDepth.Rd | 2
man/calibrateSpeed.Rd | 2
man/detDive-internal.Rd | 2
man/detPhase-internal.Rd | 2
man/distSpeed.Rd | 4
man/diveMove-internal.Rd | 2
man/diveMove-package.Rd | 5
man/diveStats.Rd | 2
man/dives.Rd | 14
man/extractDive-methods.Rd | 2
man/labDive-internal.Rd | 2
man/plotTDR-methods.Rd | 2
man/readLocs.Rd | 8
man/readTDR.Rd | 14
man/rqPlot.Rd | 2
man/sealLocs.Rd | 9
man/timeBudget-methods.Rd | 2
man/zoc.Rd | 2
tests/calibrations.R | 9
tests/class-tests.R | 13
tests/final-stats.R | 12
57 files changed, 38070 insertions(+), 37614 deletions(-)
Title: Benchmark dose analysis for dose-response data
Diff between bmd versions 0.1 dated 2008-06-05 and 0.2 dated 2010-02-05
Description: Benchmark dose analysis for continuous and quantal
dose-response data.
Author: Christian Ritz
Maintainer: Christian Ritz
DESCRIPTION | 29 ++++++++++++++++-------------
inst/CITATION | 7 ++++---
2 files changed, 20 insertions(+), 16 deletions(-)
Title: R interface to the yacas computer algebra system
Diff between Ryacas versions 0.2-9 dated 2009-03-03 and 0.2-10 dated 2010-02-05
Description: An interface to the yacas computer algebra system.
Author: Rob Goedman
Maintainer: G. Grothendieck
DESCRIPTION | 30
INSTALL |only
R/Num.R |only
R/OpenMath2R.R | 3
R/yacas.R | 7
inst/NEWS | 8
inst/doc/Ryacas.pdf | 2613 ++++++++++++++++++++++++++++------------------------
7 files changed, 1446 insertions(+), 1215 deletions(-)
Title: Sparse and Dense Matrix Classes and Methods
Diff between Matrix versions 0.999375-36 dated 2010-02-04 and 0.999375-37 dated 2010-02-05
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
Author: Douglas Bates
Maintainer: Doug and Martin
ChangeLog | 12
DESCRIPTION | 8
R/Csparse.R | 44 +--
TODO | 2
inst/doc/Comparisons.pdf |binary
inst/doc/Design-issues.pdf |binary
inst/doc/Intro2Matrix.pdf | 587 ++++++++++++++++++++++-----------------------
inst/doc/Introduction.pdf |binary
inst/doc/sparseModels.pdf |binary
inst/test-tools.R | 28 +-
src/Csparse.c | 22 +
tests/indexing.R | 29 +-
tests/indexing.Rout.save | 429 ++++++++++++++++++--------------
13 files changed, 629 insertions(+), 532 deletions(-)
Title: Geographically weighted regression
Diff between spgwr versions 0.6-2 dated 2009-06-26 and 0.6-4 dated 2010-02-05
Description: Functions for computing geographically weighted
regressions based on work by Chris Brunsdon, Martin Charlton
and Stewart Fortheringham, http://ncg.nuim.ie/ncg/GWR/index.htm
Author: Roger Bivand and Danlin Yu, contributions by Tomoki Nakaya,
tricube function based on a contribution by Miquel-Angel
Garcia-Lopez
Maintainer: Roger Bivand
ChangeLog | 13 +++++++++++--
DESCRIPTION | 14 ++++++++------
INDEX | 1 +
R/gwr.R | 12 ++++++------
R/tricube.R |only
inst/ChangeLog | 22 ++++++++++++++++++++--
man/gwr.tricube.Rd |only
7 files changed, 46 insertions(+), 16 deletions(-)
Title: Spatial dependence: weighting schemes, statistics and models
Diff between spdep versions 0.4-56 dated 2009-12-18 and 0.4-58 dated 2010-02-05
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by
distance and tesselations, for summarising these objects, and
for permitting their use in spatial data analysis, including
regional aggregation by minimum spanning tree; a collection of
tests for spatial autocorrelation, including global Moran's I,
APLE, Geary's C, Hubert/Mantel general cross product statistic,
Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G
and multicoloured join count statistics, local Moran's I and
Getis/Ord G, saddlepoint approximations and exact tests for
global and local Moran's I; and functions for estimating
spatial simultaneous autoregressive (SAR) lag and error models,
impact measures for lag models, weighted and unweighted SAR and
CAR spatial regression models, semi-parametric and Moran
eigenvector spatial filtering, GM SAR error models, and
generalized spatial two stage least squares models.
Author: Roger Bivand
Maintainer: Roger Bivand
ChangeLog | 15
DESCRIPTION | 20 -
INDEX | 5
NAMESPACE | 15
R/globalG.R | 3
R/mess.R |only
R/summary.spsarlm.R | 4
inst/ChangeLog | 15
inst/doc/CO69.pdf |binary
inst/doc/sids.pdf | 964 +++++++++++++++++++++++++---------------------------
man/globalG.test.Rd | 6
man/lagmess.Rd |only
man/skater.Rd | 2
man/ssw.Rd | 2
14 files changed, 542 insertions(+), 509 deletions(-)
Title: Control Charts, Capability and Distribution Identification
Diff between qAnalyst versions 0.6.1 dated 2010-01-27 and 0.6.2 dated 2010-02-05
Description: qAnalyst performs: control charts for variables and
attributes according to Douglas C. Montgomery Introduction to
Statistical Quality Control book, Capability analysis for
normal and non - normal distributions and Distributions
Identification
Author: Andrea Spano'
Maintainer: Andrea Spano'
DESCRIPTION | 8 -
R/plot.spc.R | 4
R/spc.R | 9 -
R/testFun.R | 335 +++++++++++++++++++++++----------------------
README | 5
man/brakeCap.Rd | 3
man/capabilityNormal.Rd | 6
man/capabilityNotNormal.Rd | 6
man/probplot.Rd | 6
man/qAnalyst-package.Rd | 33 ++--
man/spc.Rd | 65 ++++----
man/summary.capability.Rd | 5
man/testFun.Rd | 36 ++--
man/toys.Rd | 3
man/tubes.Rd | 3
15 files changed, 287 insertions(+), 240 deletions(-)
Title: Estimation of attributable and partial attributable risks (AR
and PAR) and visualization of attributable risks from
case-control data
Diff between pARccs versions 0.2-1 dated 2009-11-26 and 0.2-2 dated 2010-02-05
Description: Functions to estimate (partial) attributable risks from
case-control data with corresponding percentile or BCa
confidence intervals; Visualization of attributable riks
Author: Christiane Raemsch
Maintainer: Christiane Raemsch
DESCRIPTION | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
Title: Analysis of Mark-Recapture data
Diff between mra versions 2.3 dated 2010-02-03 and 2.4 dated 2010-02-05
Description: Analysis of mark-recapture data using covariates. Models
implemented: CJS open population; Huggin's closed population.
Author: Trent McDonald
Maintainer: Trent McDonald
DESCRIPTION | 8 ++++----
R/F.cjs.estim.R | 3 ++-
man/F.fit.table.Rd | 19 +++++++++----------
src/Mrawin.f90 | 2 +-
4 files changed, 16 insertions(+), 16 deletions(-)
Title: Simple key-value database
Diff between filehash versions 2.0-2 dated 2010-01-27 and 2.1 dated 2010-02-05
Description: Simple key-value database
Author: Roger D. Peng
Maintainer: Roger D. Peng
DESCRIPTION | 8 ++++----
R/filehash-DB1.R | 6 ------
R/filehash-RDS.R | 8 ++++++++
R/filehash.R | 15 ++++++++++-----
inst/doc/filehash.pdf |binary
man/filehash-class.Rd | 4 ++--
6 files changed, 24 insertions(+), 17 deletions(-)
Title: Functional Data Analysis
Diff between fda versions 2.2.0 dated 2009-11-12 and 2.2.1 dated 2010-02-05
Description: These functions were developed to support functional data
analysis as described in Ramsay, J. O. and Silverman, B. W.
(2005) Functional Data Analysis. New York: Springer. They were
ported from earlier versions in Matlab and S-PLUS. An
introduction appears in Ramsay, J. O., Hooker, Giles, and
Graves, Spencer (2009) Functional Data Analysis with R and
Matlab (Springer). The package includes data sets and script
files working many examples including all but one of the 76
figures in this latter book.
Author: J. O. Ramsay
Maintainer: J. O. Ramsay
DESCRIPTION | 10 ++--
R/fRegress.R | 81 ++++++++++++++++++++++++++++++++++++---
R/fRegressArgCheck.R | 9 +---
R/fd.R | 105 +++++++++++++++++++++++++++------------------------
R/inprod.R | 8 +--
5 files changed, 144 insertions(+), 69 deletions(-)
Title: Bayesian Mixture Models with JAGS
Diff between bayesmix versions 0.6-1 dated 2009-06-14 and 0.7-0 dated 2010-02-05
Description: Bayesian mixture models of univariate Gaussian
distributions using JAGS
Author: Bettina Gruen
Maintainer: Bettina Gruen
bayesmix-0.6-1/bayesmix/R/AAA.R |only
bayesmix-0.6-1/bayesmix/R/JAGScontrol.R |only
bayesmix-0.6-1/bayesmix/R/haveJags.R |only
bayesmix-0.6-1/bayesmix/man/JAGSread.Rd |only
bayesmix-0.6-1/bayesmix/man/JAGSsetup.Rd |only
bayesmix-0.6-1/bayesmix/man/haveJAGS.Rd |only
bayesmix-0.7-0/bayesmix/DESCRIPTION | 15 +--
bayesmix-0.7-0/bayesmix/NAMESPACE | 5 -
bayesmix-0.7-0/bayesmix/NEWS | 5 +
bayesmix-0.7-0/bayesmix/R/BMMmodel.R | 4
bayesmix-0.7-0/bayesmix/R/BMMpriors.R | 2
bayesmix-0.7-0/bayesmix/R/Inits.R | 11 --
bayesmix-0.7-0/bayesmix/R/JAGScall.R | 72 ++++++-----------
bayesmix-0.7-0/bayesmix/R/JAGSrun.R | 89 ++++++++--------------
bayesmix-0.7-0/bayesmix/R/Sort.R | 15 +--
bayesmix-0.7-0/bayesmix/R/plots.R | 30 +++----
bayesmix-0.7-0/bayesmix/R/randomPermutation.R | 4
bayesmix-0.7-0/bayesmix/man/BMMmodel.Rd | 21 ++---
bayesmix-0.7-0/bayesmix/man/BMMposteriori.Rd | 3
bayesmix-0.7-0/bayesmix/man/BMMpriors.Rd | 4
bayesmix-0.7-0/bayesmix/man/JAGScall.Rd | 20 ++--
bayesmix-0.7-0/bayesmix/man/JAGScontrol.Rd | 38 +++------
bayesmix-0.7-0/bayesmix/man/JAGSrun.Rd | 37 +++------
bayesmix-0.7-0/bayesmix/man/darwin.Rd | 6 -
bayesmix-0.7-0/bayesmix/man/fish.Rd | 2
bayesmix-0.7-0/bayesmix/man/inits.Rd | 4
bayesmix-0.7-0/bayesmix/man/plot.BMMposteriori.Rd | 2
bayesmix-0.7-0/bayesmix/man/plot.jags.Rd | 5 -
28 files changed, 166 insertions(+), 228 deletions(-)
Title: FunctSNP - SNP annotation data methods and species specific
database builder
Diff between FunctSNP versions 1.0-1 dated 2010-01-19 and 1.0-2 dated 2010-02-05
Description: This package provides functions to query species-specific
annotation databases. The main use of the package is to
associate SNPs to functional information. Functions are also
provided to download or build local databases from public
repositories.
Author: S. J. Goodswen with contributions from N. S. Watson-Haigh, H.
N. Kadarmideen and C. Gondro
Maintainer: S. J. Goodswen
FunctSNP-1.0-1/FunctSNP/BinaryFiles |only
FunctSNP-1.0-1/FunctSNP/inst/dbAutoMaker/Programs/linux_sqlite3.exe |only
FunctSNP-1.0-1/FunctSNP/inst/dbAutoMaker/Programs/sqlite3.exe |only
FunctSNP-1.0-1/FunctSNP/inst/dbAutoMaker/Programs/win_sqlite3.exe |only
FunctSNP-1.0-2/FunctSNP/DESCRIPTION | 10 +++++-----
FunctSNP-1.0-2/FunctSNP/inst/dbAutoMaker/Admin/startup.pl | 10 +++++-----
FunctSNP-1.0-2/FunctSNP/src |only
7 files changed, 10 insertions(+), 10 deletions(-)