Sun, 07 Mar 2010

Package arulesSequences updated to version 0.1-9 with previous version 0.1-8 dated 2009-06-15

Title: Mining frequent sequences
Description: Add-on for arules to handle and mine frequent sequences. Provides interfaces to the C++ implementation of cSPADE by Mohammed J. Zaki.
Author: Christian Buchta and Michael Hahsler
Maintainer: Christian Buchta

Diff between arulesSequences versions 0.1-8 dated 2009-06-15 and 0.1-9 dated 2010-03-07

 CHANGELOG                   |    4 ++++
 DESCRIPTION                 |   10 +++++-----
 data/zaki.rda               |binary
 man/c-methods.Rd            |    2 +-
 man/info-methods.Rd         |    2 +-
 man/match-methods.Rd        |    2 +-
 man/timedsequences-class.Rd |    8 ++++----
 7 files changed, 16 insertions(+), 12 deletions(-)

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Package REQS updated to version 0.8-6 with previous version 0.8-5 dated 2009-11-19

Title: R/EQS Interface
Description: This package contains the function run.eqs() which calls an EQS script file, executes the EQS estimation, and, finally, imports the results as R objects. These two steps can be performed separately: call.eqs() calls and executes EQS, whereas read.eqs() imports existing EQS outputs as objects into R.
Author: Patrick Mair, Eric Wu
Maintainer: Eric Wu

Diff between REQS versions 0.8-5 dated 2009-11-19 and 0.8-6 dated 2010-03-07

 DESCRIPTION  |    8 ++++----
 R/read.eqs.R |   39 +++++++++++++++++++++++++++------------
 2 files changed, 31 insertions(+), 16 deletions(-)

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New package MAd with initial version 0.1
Package: MAd
Type: Package
Title: Meta-Analysis with Mean Differences
Version: 0.1
Date: 2010-03-07
Author: AC Del Re & William T. Hoyt
Maintainer: AC Del Re
Description: This is an integrated meta-analysis package for conducting a research synthesis with mean difference data. One of the unique features of this package is in its integration of user-friendly functions to complete all statistical steps involved in a meta-analysis with mean differences. It uses recommended procedures as described in The Handbook of Research Synthesis and Meta-Analysis (Cooper, Hedges, & Valentine, 2009).
Depends: R (>= 2.10.1), plyr, ggplot2
License: GPL-2
Packaged: 2010-03-07 18:18:35 UTC; User
Repository: CRAN
Date/Publication: 2010-03-07 18:41:41

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Package vcdExtra updated to version 0.4-1 with previous version 0.4-0 dated 2010-02-28

Title: vcd additions
Description: Provides additional data sets, methods and documentation to complement the vcd package for Visualizing Categorical Data.
Author: Michael Friendly with Heather Turner, David Firth and Achim Zeileis
Maintainer: Michael Friendly

Diff between vcdExtra versions 0.4-0 dated 2010-02-28 and 0.4-1 dated 2010-03-07

 DESCRIPTION                            |   10 ++--
 NAMESPACE                              |   12 +++--
 NEWS                                   |   10 ++++
 R/modFit.R                             |only
 R/mosaic.glm.R                         |   63 +++++++++++++++++------------
 data/Heckman.rda                       |binary
 demo/00Index                           |    2 
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 inst/doc/fig/vcd-tut-Arthritis.pdf     |    4 -
 inst/doc/fig/vcd-tut-TV-mosaic.pdf     |    4 -
 inst/doc/fig/vcd-tut-agreesex.pdf      |    4 -
 inst/doc/fig/vcd-tut-art21.pdf         |    4 -
 inst/doc/fig/vcd-tut-art22.pdf         |    4 -
 inst/doc/fig/vcd-tut-ca-haireye.pdf    |    4 -
 inst/doc/fig/vcd-tut-cdplot.pdf        |    4 -
 inst/doc/fig/vcd-tut-fourfold1.pdf     |    4 -
 inst/doc/fig/vcd-tut-hec1.pdf          |    4 -
 inst/doc/fig/vcd-tut-hec2.pdf          |    4 -
 inst/doc/fig/vcd-tut-hec3.pdf          |    4 -
 inst/doc/fig/vcd-tut-mental-plots1.pdf |    4 -
 inst/doc/fig/vcd-tut-mental-plots2.pdf |    4 -
 inst/doc/fig/vcd-tut-oddsratio.pdf     |    4 -
 inst/doc/fig/vcd-tut-spine2.pdf        |    4 -
 inst/doc/fig/vcd-tut-spine3.pdf        |    4 -
 inst/doc/vcd-tutorial.pdf              |   70 ++++++++++++++++-----------------
 man/Abortion.Rd                        |    1 
 man/Caesar.Rd                          |   43 ++++++++++++++++++--
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 man/Dyke.Rd                            |   14 +++++-
 man/Heckman.Rd                         |   45 +++++++++++++++++----
 man/modFit.Rd                          |only
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 man/vcdExtra-package.Rd                |    4 -
 33 files changed, 254 insertions(+), 125 deletions(-)

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Package rbenchmark updated to version 0.3 with previous version 0.2 dated 2009-03-27

Title: Benchmarking routine for R
Description: rbenchmark is inspired by the Perl module Benchmark, and is intended to facilitate benchmarking of arbitrary R code. The library consists of just one function, benchmark, which is a simple wrapper around system.time. Given a specification of the benchmarking process (counts of replications, evaluation environment) and an arbitrary number of expressions, benchmark evaluates each of the expressions in the specified environment, replicating the evaluation as many times as specified, and returning the results conveniently wrapped into a data frame.
Author: Wacek Kusnierczyk
Maintainer: Wacek Kusnierczyk

Diff between rbenchmark versions 0.2 dated 2009-03-27 and 0.3 dated 2010-03-07

 DESCRIPTION              |    8 ++++----
 R/benchmark.R            |   18 ++++++++++++------
 man/benchmark-package.Rd |    4 ++--
 man/benchmark.Rd         |    8 +++++---
 4 files changed, 23 insertions(+), 15 deletions(-)

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Package rattle updated to version 2.5.24 with previous version 2.5.23 dated 2010-03-04

Title: A graphical user interface for data mining in R using Gnome
Description: Rattle (the R Analytic Tool To Learn Easily) provides a Gnome (RGtk2) based interface to R functionality for data mining. The aim is to provide a simple and intuitive interface that allows a user to quickly load data from a CSV file (or via ODBC), transform and explore the data, build and evaluate models, and export models as PMML (predictive modelling markup language) or as scores. All of this with knowing little about R. All R commands are logged and commented through the log tab and so available to the user as a script file or as an aide to the user to interact directly with R itself. Rattle also exports a number of utility functions and the graphical user interface, invoked as rattle(), does not need to be run to deploy these.
Author: Graham Williams
Maintainer: Graham Williams

Diff between rattle versions 2.5.23 dated 2010-03-04 and 2.5.24 dated 2010-03-07

 DESCRIPTION                        |    8 
 R/data.R                           |    7 
 R/evaluate.R                       |  165 +++--
 R/help.R                           | 1031 ++++++++++++++++++-------------------
 R/rattle.R                         |    8 
 data/weatherAUS.RData              |binary
 inst/ChangeLog                     |   14 
 inst/doc/rattle.pdf                |binary
 inst/etc/rattle.glade              |   65 +-
 inst/po/de/LC_MESSAGES/R-rattle.mo |binary
 inst/po/es/LC_MESSAGES/R-rattle.mo |binary
 inst/po/ja/LC_MESSAGES/R-rattle.mo |binary
 12 files changed, 702 insertions(+), 596 deletions(-)

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Package pgirmess updated to version 1.4.4 with previous version 1.4.3 dated 2009-12-11

Title: Data analysis in ecology
Description: Miscellaneous functions for analysis and display of ecological and spatial data
Author: Patrick Giraudoux
Maintainer: Patrick Giraudoux

Diff between pgirmess versions 1.4.3 dated 2009-12-11 and 1.4.4 dated 2010-03-07

 DESCRIPTION      |    8 ++++----
 R/kruskalmc.r    |    3 +++
 R/shannon.R      |   13 +++++++------
 man/classnum.Rd  |    7 +++----
 man/kruskalmc.Rd |    2 +-
 man/shannon.Rd   |   11 +++++------
 6 files changed, 23 insertions(+), 21 deletions(-)

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New package ordinal with initial version 2010.03-04
Package: ordinal
Type: Package
Title: Regression Models for Ordinal Data
Version: 2010.03-04
Date: 2010-03-04
Author: Rune Haubo B Christensen
Maintainer: Rune Haubo B Christensen
Imports: numDeriv
Depends: MASS, ucminf
Description: This package implements likelihood based models for ordinal (ordered categorical) data based on cumulative probabilities in the framework of cumulative link models. This includes the important proportional odds model but also allows for general regression structures for location as well as scale of the latent distribution, i.e. additive as well as multiplicative structures, structured thresholds (cut-points), nominal effects and flexible link functions. Further, a range of estimation procedures and a range of auxiliary functions are implemented.
License: GPL (>= 2)
Packaged: 2010-03-05 18:15:28 UTC; rhbc
Repository: CRAN
Date/Publication: 2010-03-07 17:09:51

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New package minqa with initial version 1.1
Package: minqa
Type: Package
Title: Derivative-free optimization algorithms by quadratic approximation
Version: 1.1
Author: Katharine M. Mullen, John C. Nash, Ravi Varadhan
Maintainer: Katharine M. Mullen
Description: Derivative-free optimization by quadratic approximation based on an interface to Fortran implementations by M. J. D. Powell
License: GPL (>= 2)
Packaged: 2010-03-05 23:54:54 UTC; kmullen
Repository: CRAN
Date/Publication: 2010-03-07 17:09:49

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Package isopam updated to version 0.9-6 with previous version 0.9-5 dated 2010-02-18

Title: Isopam (Hierarchical Clustering)
Description: Isopam clustering algorithm and utilities. Isopam optimizes clusters and optionally cluster numbers in a brute force style and aims at an optimum separation by a limited number of indicative descriptors (typically species).
Author: Sebastian Schmidtlein with contributions from Jason Collison
Maintainer: Sebastian Schmidtlein

Diff between isopam versions 0.9-5 dated 2010-02-18 and 0.9-6 dated 2010-03-07

 isopam-0.9-5/isopam/R/isopam.2.r    |only
 isopam-0.9-5/isopam/man/isopam.2.Rd |only
 isopam-0.9-6/isopam/DESCRIPTION     |    8 
 isopam-0.9-6/isopam/R/isopam.R      |  408 +++++++++++++++++++++---------------
 isopam-0.9-6/isopam/R/isotab.R      |   87 ++++++-
 isopam-0.9-6/isopam/man/isopam.Rd   |  142 ++++++------
 6 files changed, 392 insertions(+), 253 deletions(-)

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Package gWidgetsRGtk2 updated to version 0.0-61 with previous version 0.0-59 dated 2010-02-13

Title: Toolkit implementation of gWidgets for RGtk2
Description: Port of gWidgets API to RGtk2
Author: Michael Lawrence, John Verzani
Maintainer: John Verzani

Diff between gWidgetsRGtk2 versions 0.0-59 dated 2010-02-13 and 0.0-61 dated 2010-03-07

 ChangeLog                    |   11 +++++++++++
 DESCRIPTION                  |    6 +++---
 NAMESPACE                    |    4 +++-
 NEWS                         |   13 +++++++++++++
 R/gmenu.R                    |    2 +-
 R/gvarbrowser.R              |    9 +++++++++
 TODO.txt                     |    3 ++-
 man/gWidgetsRGtk2-package.Rd |    6 ++++++
 8 files changed, 48 insertions(+), 6 deletions(-)

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Package diffractometry updated to version 0.1-02 with previous version 0.1-00 dated 2008-06-13

Title: Baseline identification and peak decomposition for x-ray diffractograms
Description: Residual-based baseline identification and peak decomposition for x-ray diffractograms as introduced in Davies/Gather/Mergel/Meise/Mildenberger (2008).
Author: P.L. Davies, U. Gather, M. Meise, D.Mergel, T. Mildenberger. Additional Code by T. Bernholt and T. Hofmeister
Maintainer: T. Mildenberger

Diff between diffractometry versions 0.1-00 dated 2008-06-13 and 0.1-02 dated 2010-03-07

 DESCRIPTION                   |   26 ++++++++------
 R/fitint.r                    |    6 +--
 man/baselinefit.Rd            |    6 ++-
 man/diffractogram.Rd          |    6 ++-
 man/diffractometry-package.Rd |    9 +++-
 man/indiumoxide.Rd            |    6 ++-
 man/pkdecomp.Rd               |    5 ++
 man/pkdecompint.Rd            |    5 ++
 src/Cbaselinefit.c            |   10 ++---
 src/MaxSubsequenceMod.cpp     |   77 +-----------------------------------------
 src/p7fit.c                   |   14 ++-----
 11 files changed, 61 insertions(+), 109 deletions(-)

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New package DatABEL with initial version 0.0-6
Package: DatABEL
Type: Package
Title: file-based access to large matrices stored on HDD in binary format
Version: 0.0-6
Date: 2010-03-07
Author: Yurii Aulchenko
Maintainer: Yurii Aulchenko
Depends: R (>= 2.4.0), methods
Description: a package providing interface to C++ FILEVECTOR library facilitating analysis of large (giga- to tera-bytes) matrices; matrix storage is organized in a way that either columns or rows are quickly accessible; primarily aimed to support genome-wide association analyzes e.g. using GenABEL and ProbABEL
License: GPL (>= 2)
Packaged: 2010-03-07 13:36:39 UTC; yuriiaulchenko
Repository: CRAN
Date/Publication: 2010-03-07 17:09:37

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