Title: Ishwaran and Kogalur's Random Survival Forest
Diff between randomSurvivalForest versions 3.6.1 dated 2010-01-27 and 3.6.2 dated 2010-03-09
More information about randomSurvivalForest at CRAN
Description: Ensemble survival analysis based on a random forest of
trees using random inputs.
Author: Hemant Ishwaran
Maintainer: Udaya B. Kogalur
randomSurvivalForest-3.6.1/randomSurvivalForest/CITATION |only
randomSurvivalForest-3.6.2/randomSurvivalForest/DESCRIPTION | 10
randomSurvivalForest-3.6.2/randomSurvivalForest/R/competing.risk.R | 53
randomSurvivalForest-3.6.2/randomSurvivalForest/R/extract.factor.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/find.interaction.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/impute.rsf.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/max.subtree.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/plot.ensemble.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/plot.error.R | 14
randomSurvivalForest-3.6.2/randomSurvivalForest/R/plot.proximity.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/plot.rsf.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/plot.variable.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/pmml2rsf.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/predict.rsf.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/print.rsf.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/randomSurvivalForest.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/rsf.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/rsf.default.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/rsf.formula.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/rsf.news.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/rsf2pmml.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/rsf2rfz.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/varSel.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/vimp.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/zzz.R | 2
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randomSurvivalForest-3.6.2/randomSurvivalForest/man/find.interaction.Rd | 26
randomSurvivalForest-3.6.2/randomSurvivalForest/man/impute.Rd | 20
randomSurvivalForest-3.6.2/randomSurvivalForest/man/max.subtree.Rd | 11
randomSurvivalForest-3.6.2/randomSurvivalForest/man/plot.ensemble.Rd | 13
randomSurvivalForest-3.6.2/randomSurvivalForest/man/plot.error.Rd | 11
randomSurvivalForest-3.6.2/randomSurvivalForest/man/plot.proximity.Rd | 7
randomSurvivalForest-3.6.2/randomSurvivalForest/man/plot.variable.Rd | 25
randomSurvivalForest-3.6.2/randomSurvivalForest/man/predict.rsf.Rd | 33
randomSurvivalForest-3.6.2/randomSurvivalForest/man/print.rsf.Rd | 7
randomSurvivalForest-3.6.2/randomSurvivalForest/man/rsf.Rd | 96 -
randomSurvivalForest-3.6.2/randomSurvivalForest/man/varSel.Rd | 34
randomSurvivalForest-3.6.2/randomSurvivalForest/man/vimp.Rd | 16
randomSurvivalForest-3.6.2/randomSurvivalForest/man/wihs.Rd | 17
randomSurvivalForest-3.6.2/randomSurvivalForest/src/extern.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/factor.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/global.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/node.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/nodeOps.c | 19
randomSurvivalForest-3.6.2/randomSurvivalForest/src/nodeOps.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/nrutil.c | 116 -
randomSurvivalForest-3.6.2/randomSurvivalForest/src/nrutil.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsf.c | 380 -----
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsf.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfBootstrap.c | 38
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfBootstrap.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfEntry.c | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfEntry.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfFactorOps.c | 70 -
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfFactorOps.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfImportance.c | 167 --
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfImportance.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfImpute.c | 667 ----------
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfImpute.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfSplit.c | 175 --
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfSplit.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfSplitUtil.c | 348 -----
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfSplitUtil.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfStack.c | 654 ---------
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfStack.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfTree.c | 104 -
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfTree.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfUtil.c | 513 -------
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfUtil.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/trace.c | 5
randomSurvivalForest-3.6.2/randomSurvivalForest/src/trace.h | 2
73 files changed, 266 insertions(+), 3508 deletions(-)
Permanent link
Title: Poor Man's GUI
Diff between pmg versions 0.9-41 dated 2009-12-10 and 0.9-42 dated 2010-03-09
Description: Simple GUI for R using gWidgets.
Author: John Verzani with contributions by Yvonnick Noel
Maintainer: John Verzani
ChangeLog | 6 ++++++
DESCRIPTION | 6 +++---
NEWS | 5 +++++
R/dHtest.R | 10 +++++-----
R/dModelsDialog.R | 4 ++--
R/dSummaryDialog.R | 6 +++---
R/pmg.iplots.R | 4 ++--
R/reshape.R | 4 ++--
inst/doc/pmg.pdf |binary
9 files changed, 28 insertions(+), 17 deletions(-)
Title: Kernel smoothing
Diff between ks versions 1.6.10 dated 2010-02-24 and 1.6.11 dated 2010-03-09
Description: Kernel density estimators and kernel discriminant analysis
for multivariate data
Author: Tarn Duong
Maintainer: Tarn Duong
DESCRIPTION | 8 ++---
R/kde.R | 87 +++++++++++++++++++++++++++++++++++++++++--------------
R/selector.R | 18 ++++++-----
README | 9 ++++-
inst/doc/kde.pdf |binary
man/plot.kde.Rd | 4 +-
6 files changed, 89 insertions(+), 37 deletions(-)
Title: Toolkit implementation of gWidgets for RGtk2
Diff between gWidgetsRGtk2 versions 0.0-61 dated 2010-03-07 and 0.0-62 dated 2010-03-09
Description: Port of gWidgets API to RGtk2
Author: Michael Lawrence, John Verzani
Maintainer: John Verzani
ChangeLog | 15 +++++++++
DESCRIPTION | 6 +--
NAMESPACE | 2 -
NEWS | 10 ++++++
R/gdfnotebook.R | 17 ++++++++--
R/gedit.R | 60 +++++++++++++++++++++++++++++---------
R/ggroup.R | 2 -
R/gmenu.R | 6 +++
R/gtoolbar.R | 5 +--
man/gWidgetsRGtk2-undocumented.Rd | 1
10 files changed, 99 insertions(+), 25 deletions(-)
Title: Rcpp R/C++ interface package
Diff between Rcpp versions 0.7.7 dated 2010-02-14 and 0.7.8 dated 2010-03-09
Description: Seamless R and C++ integration The Rcpp package contains a
C++ library that facilitates the integration of R and C++ in
various ways.
R data types (SEXP) are matched to C++ objects in a class hierarchy.
All R types are supported (vectors, functions, environment, etc
...) and each type is mapped to a dedicated class. For
example, numeric vectors are represented as instances of the
Rcpp::NumericVector class, environments are represented as
instances of Rcpp::Environment, functions are represented as
Rcpp::Function, etc ...
The underlying C++ library also offers the Rcpp::wrap function which is
a templated function that transforms an arbitrary object into a
SEXP. This makes it straightforward to implement C++ logic in
terms of standard C++ types such as STL containers and then
wrap them when they need to be returned to R. Internally, wrap
uses advanced template meta programming techniques and
currently supports : primitive types (bool, int, double,
size_t, Rbyte, Rcomplex, std::string), STL containers (e.g
std::vector
Author: Dirk Eddelbuettel and Romain Francois, with contributions by
Simon Urbanek and David Reiss; based on code written during
2005 and 2006 by Dominick Samperi
Maintainer: Dirk Eddelbuettel and Romain Francois
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Rcpp-0.7.8/Rcpp/INDEX | 7
Rcpp-0.7.8/Rcpp/NAMESPACE | 8
Rcpp-0.7.8/Rcpp/NEWS | 58 +
Rcpp-0.7.8/Rcpp/R/RcppLdpath.R | 8
Rcpp-0.7.8/Rcpp/cleanup | 5
Rcpp-0.7.8/Rcpp/configure.win | 22
Rcpp-0.7.8/Rcpp/inst/ChangeLog | 177 +++
Rcpp-0.7.8/Rcpp/inst/doc/Makefile | 12
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Rcpp-0.7.8/Rcpp/inst/doc/rcpp.index.html | 1
Rcpp-0.7.8/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.html | 46
Rcpp-0.7.8/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.txt | 547 +++++-----
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Rcpp-0.7.8/Rcpp/inst/examples/RcppInline/RcppInlineWithLibsExamples.r | 10
Rcpp-0.7.8/Rcpp/inst/examples/functionCallback/buildAndRun.sh | 2
Rcpp-0.7.8/Rcpp/inst/skeleton/Makevars | 31
Rcpp-0.7.8/Rcpp/inst/skeleton/Makevars.win | 4
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.CharacterVector.R | 10
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.Column.R |only
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.Function.R | 47
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.GenericVector.R | 44
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.IntegerVector.R | 99 +
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.Language.R | 21
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.Matrix.R |only
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.Row.R |only
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.as.R | 18
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.clone.R | 3
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.macros.R |only
Rcpp-0.7.8/Rcpp/man/Rcpp-package.Rd | 7
Rcpp-0.7.8/Rcpp/man/Rcpp.package.skeleton.Rd | 20
Rcpp-0.7.8/Rcpp/src/Environment.cpp | 20
Rcpp-0.7.8/Rcpp/src/Makevars | 8
Rcpp-0.7.8/Rcpp/src/Makevars.win | 43
Rcpp-0.7.8/Rcpp/src/RObject.cpp | 4
Rcpp-0.7.8/Rcpp/src/Rcpp.h | 13
Rcpp-0.7.8/Rcpp/src/Rcpp/DottedPair.h | 3
Rcpp-0.7.8/Rcpp/src/Rcpp/Environment.h | 20
Rcpp-0.7.8/Rcpp/src/Rcpp/Function.h | 1
Rcpp-0.7.8/Rcpp/src/Rcpp/Language.h | 19
Rcpp-0.7.8/Rcpp/src/Rcpp/Named.h | 39
Rcpp-0.7.8/Rcpp/src/Rcpp/Promise.h | 4
Rcpp-0.7.8/Rcpp/src/Rcpp/RObject.h | 7
Rcpp-0.7.8/Rcpp/src/Rcpp/StringTransformer.h |only
Rcpp-0.7.8/Rcpp/src/Rcpp/Symbol.h | 1
Rcpp-0.7.8/Rcpp/src/Rcpp/Vector.h |only
Rcpp-0.7.8/Rcpp/src/Rcpp/WeakReference.h | 1
Rcpp-0.7.8/Rcpp/src/Rcpp/XPtr.h | 2
Rcpp-0.7.8/Rcpp/src/Rcpp/as.h | 114 --
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Rcpp-0.7.8/Rcpp/src/Rcpp/internal/r_vector.h | 2
Rcpp-0.7.8/Rcpp/src/Rcpp/internal/wrap.h | 101 +
Rcpp-0.7.8/Rcpp/src/Rcpp/r_cast.h | 5
Rcpp-0.7.8/Rcpp/src/Rcpp/traits/Exporter.h |only
Rcpp-0.7.8/Rcpp/src/Rcpp/traits/has_iterator.h | 40
Rcpp-0.7.8/Rcpp/src/Rcpp/traits/r_type_traits.h | 1
Rcpp-0.7.8/Rcpp/src/Rcpp/traits/wrap_type_traits.h | 5
Rcpp-0.7.8/Rcpp/src/RcppCommon.cpp | 45
Rcpp-0.7.8/Rcpp/src/RcppCommon.h | 52
Rcpp-0.7.8/Rcpp/src/WeakReference.cpp | 1
Rcpp-0.7.8/Rcpp/src/r_cast.cpp | 3
91 files changed, 1230 insertions(+), 550 deletions(-)
Title: Diagnostic test accuracy evaluation for medical professionals.
Diff between DiagnosisMed versions 0.2.2.2 dated 2009-08-25 and 0.2.3 dated 2010-03-09
Description: DiagnosisMed is a package to analyze data from diagnostic
test accuracy evaluating health conditions. It is being built
to be used by health professionals. This package is able to
estimate sensitivity and specificity from categorical and
continuous test results including some evaluations of
indeterminate results, or compare different categorical tests,
and estimate reasonble cut-offs of tests and display it in a
way commonly used by health professionals. No graphical
interface is avalible yet. Partners are most welcome.
Author: Pedro Brasil
Maintainer: Pedro Brasil
DiagnosisMed-0.2.2.2/DiagnosisMed/R/diagnosisI.r |only
DiagnosisMed-0.2.2.2/DiagnosisMed/man/plot.diag.Rd |only
DiagnosisMed-0.2.3/DiagnosisMed/DESCRIPTION | 15 +-
DiagnosisMed-0.2.3/DiagnosisMed/R/LRgraph.r | 33 +++---
DiagnosisMed-0.2.3/DiagnosisMed/R/ROC.r | 12 +-
DiagnosisMed-0.2.3/DiagnosisMed/R/diagnosis.r | 93 +++++++++++++-----
DiagnosisMed-0.2.3/DiagnosisMed/R/plot.ROC.r | 30 ++---
DiagnosisMed-0.2.3/DiagnosisMed/R/plot.diag.r | 5
DiagnosisMed-0.2.3/DiagnosisMed/R/print.ROC.r | 2
DiagnosisMed-0.2.3/DiagnosisMed/R/print.diag.r | 35 +++---
DiagnosisMed-0.2.3/DiagnosisMed/R/summary.diag.R |only
DiagnosisMed-0.2.3/DiagnosisMed/R/zzz.r | 2
DiagnosisMed-0.2.3/DiagnosisMed/man/LRgrgaph.Rd | 37 +++----
DiagnosisMed-0.2.3/DiagnosisMed/man/ROC.Rd | 93 +++++++++---------
DiagnosisMed-0.2.3/DiagnosisMed/man/TGROC.Rd | 4
DiagnosisMed-0.2.3/DiagnosisMed/man/diagnosis.Rd | 108 ++++++++++++---------
16 files changed, 273 insertions(+), 196 deletions(-)
Title: Robust PCA by Projection Pursuit
Diff between pcaPP versions 1.7 dated 2009-07-18 and 1.8 dated 2010-03-09
Description: Robust PCA by Projection Pursuit
Author: Peter Filzmoser Heinrich Fritz Klaudius Kalcher
Maintainer: Peter Filzmoser
pcaPP-1.7/pcaPP/README |only
pcaPP-1.8/pcaPP/DESCRIPTION | 6
pcaPP-1.8/pcaPP/NAMESPACE |only
pcaPP-1.8/pcaPP/R/l1median_BFGS.R |only
pcaPP-1.8/pcaPP/R/l1median_CG.R |only
pcaPP-1.8/pcaPP/R/l1median_NLM.R |only
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pcaPP-1.8/pcaPP/R/pcaPP-internal.R | 17 +
pcaPP-1.8/pcaPP/man/l1median_NLM.Rd |only
pcaPP-1.8/pcaPP/src/conv.cpp | 330 ++++++++++++++++++++++++++++++++++--
pcaPP-1.8/pcaPP/src/fastpca.h | 11 -
pcaPP-1.8/pcaPP/src/rpcGrid.cpp | 4
pcaPP-1.8/pcaPP/src/rsubst.cpp | 50 ++++-
pcaPP-1.8/pcaPP/src/rsubst.h | 4
14 files changed, 383 insertions(+), 39 deletions(-)
Title: Estimation for multivariate normal and Student-t data with
monotone missingness
Diff between monomvn versions 1.8 dated 2010-01-14 and 1.8-1 dated 2010-03-09
Description: Estimation of multivariate normal and student-t data of
arbitrary dimension where the pattern of missing data is
monotone. Through the use of parsimonious/shrinkage regressions
(plsr, pcr, lasso, ridge, etc.), where standard regressions
fail, the package can handle a nearly arbitrary amount of
missing data. The current version supports maximum likelihood
inference and a full Bayesian approach employing scale-mixtures
for the lasso (double-exponential) and Normal-Gamma priors, and
Student-t errors. Monotone data augmentation extends this
Bayesian approach to arbitrary missingness patterns. A fully
functional standalone interface to the Bayesian lasso (from
Park & Casella), Normal-Gamma (from Griffin & Brown), and ridge
regression with model selection via Reversible Jump, and
student-t errors (from Geweke) is also provided
Author: Robert B. Gramacy
Maintainer: Robert B. Gramacy
ChangeLog | 9 +++++++++
DESCRIPTION | 8 ++++----
src/blasso.cc | 12 +++++++-----
src/bmonomvn.cc | 6 ++----
4 files changed, 22 insertions(+), 13 deletions(-)
Title: Multivariate Statistical Analysis in Chemometrics
Diff between chemometrics versions 0.7 dated 2010-03-04 and 0.8 dated 2010-03-09
Description: This package is the R companion to the book "Introduction
to Multivariate Statistical Analysis in Chemometrics" written
by K. Varmuza and P. Filzmoser (2009)
Author: P. Filzmoser and K. Varmuza
Maintainer: P. Filzmoser
DESCRIPTION | 8 ++++----
R/prm_dcv.R | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)
Title: Bradley-Terry Models -- this package is now deprecated in favour
of 'BradleyTerry2'
Diff between BradleyTerry versions 0.8-7 dated 2008-07-11 and 0.8-8 dated 2010-03-09
Description: Specify and fit the Bradley-Terry model and structured
versions
Author: David Firth
Maintainer: David Firth
DESCRIPTION | 16 ++++++++++------
R/firstLib.R |only
2 files changed, 10 insertions(+), 6 deletions(-)
Title: Univariate and Multivariate Spatial Modeling
Diff between spBayes versions 0.1-5 dated 2010-01-08 and 0.1-6 dated 2010-03-09
Description: spBayes fits univariate and multivariate models with
Markov chain Monte Carlo (MCMC).
Author: Andrew O. Finley
Maintainer: Andrew O. Finley
spBayes-0.1-5/spBayes/R/dic.R |only
spBayes-0.1-5/spBayes/man/spDIC.Rd |only
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spBayes-0.1-6/spBayes/R/bayesRegression.R | 23 +-
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spBayes-0.1-6/spBayes/R/spGGT.R | 4
spBayes-0.1-6/spBayes/R/spGLM.R | 149 +++++++++-----
spBayes-0.1-6/spBayes/R/spPredict.R | 25 --
spBayes-0.1-6/spBayes/inst/doc/spBayes-vignette.pdf |binary
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spBayes-0.1-6/spBayes/man/spGGT.Rd | 8
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spBayes-0.1-6/spBayes/man/spMvLM.Rd | 7
spBayes-0.1-6/spBayes/man/spPredict.Rd | 201 +++++---------------
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spBayes-0.1-6/spBayes/src/spGLM.cpp | 16 -
spBayes-0.1-6/spBayes/src/spGLMPredict.cpp | 19 -
spBayes-0.1-6/spBayes/src/spGLM_AMCMC.cpp | 8
spBayes-0.1-6/spBayes/src/spLM.cpp | 10
spBayes-0.1-6/spBayes/src/spLMPredict.cpp | 12 -
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spBayes-0.1-6/spBayes/src/spMvGLM.cpp | 8
spBayes-0.1-6/spBayes/src/spMvGLMPredict.cpp | 8
spBayes-0.1-6/spBayes/src/spMvLMPredict.cpp | 36 ++-
spBayes-0.1-6/spBayes/src/spPPGLM.cpp | 16 -
spBayes-0.1-6/spBayes/src/spPPGLM_AMCMC.cpp | 8
spBayes-0.1-6/spBayes/src/spPPLM.cpp | 8
spBayes-0.1-6/spBayes/src/util.cpp | 12 +
spBayes-0.1-6/spBayes/src/util.h | 2
36 files changed, 325 insertions(+), 319 deletions(-)
Title: classes and methods for spatial data
Diff between sp versions 0.9-60 dated 2010-02-15 and 0.9-61 dated 2010-03-09
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location
information resides, for 2D or 3D data. Utility functions are
provided, e.g. for plotting data as maps, spatial selection, as
well as methods for retrieving coordinates, for subsetting,
print, summary, etc.
Author: Edzer Pebesma
Maintainer: Edzer Pebesma
ChangeLog | 9
DESCRIPTION | 10
inst/ChangeLog | 9
inst/doc/sp.pdf | 957 +++++++++++++++++++++++++++-----------------------------
4 files changed, 495 insertions(+), 490 deletions(-)
Title: R interface to SPRNG (Scalable Parallel Random Number
Generators)
Diff between rsprng versions 0.4 dated 2008-06-08 and 1.0 dated 2010-03-09
Description: Provides interface to SPRNG 2.0 APIs, and examples and
documentation for its use.
Author: Na (Michael) Li
Maintainer: Na (Michael) Li
rsprng-0.4/rsprng/src/.cvsignore |only
rsprng-0.4/rsprng/src/Makevars.gnuwin32 |only
rsprng-1.0/rsprng/ChangeLog | 8 +++++++-
rsprng-1.0/rsprng/DESCRIPTION | 22 ++++++++++++----------
rsprng-1.0/rsprng/src/Makevars.in | 2 +-
rsprng-1.0/rsprng/src/Makevars.win |only
rsprng-1.0/rsprng/src/sprng_core.c | 13 +++++++++++++
7 files changed, 33 insertions(+), 12 deletions(-)
Title: Semiparametric Bayesian Gaussian copula estimation and
imputation
Diff between sbgcop versions 0.95 dated 2007-03-09 and 0.975 dated 2010-03-09
Description: This package estimates parameters of a Gaussian copula,
treating the univariate marginal distributions as nuisance
parameters as described in Hoff(2007). It also provides a
semiparametric imputation procedure for missing multivariate
data.
Author: Peter Hoff
Maintainer: Peter Hoff
DESCRIPTION | 29 ++++++++++++++++-------------
R/plot.psgc.R | 3 ++-
R/sbgcop.mcmc.R | 46 ++++++++++++++++++++++++++++++----------------
man/sbgcop.mcmc.Rd | 18 ++++++++++++++----
man/sbgcop.package.Rd | 6 +++---
5 files changed, 65 insertions(+), 37 deletions(-)
Title: Tools for Two-Dimensional Monte-Carlo Simulations
Diff between mc2d versions 0.1-6 dated 2009-09-12 and 0.1-7 dated 2010-03-09
Description: Various distributions and utilities to ease the use of R
to build and study Two-Dimensional Monte-Carlo simulations
Author: Regis Pouillot
Maintainer: Regis Pouillot
DESCRIPTION | 11 +-
R/Ops.mcnode.R | 172 +++++++++++++++++++++++++++++++---------------
R/empiricalD.R | 5 -
R/extractvar.R |only
R/lhs.R | 4 -
R/mcdata.R | 4 -
R/mcratio.R |only
R/mcstoc.R | 134 ++++++++++++++++++++++-------------
R/plot.mc.R | 43 ++++++++---
R/plot.mccut.R | 2
R/plot.tornado.R | 19 +++--
R/print.mc.R | 9 +-
R/rmultinomial.R | 2
R/rmultinormal.R | 2
R/rtrunc.R | 15 ++--
inst/CITATION |only
inst/NEWS | 24 ++++++
inst/doc/Illustration.eps |only
inst/doc/Illustration.pdf |only
inst/doc/docmcEnglish.bib |only
inst/doc/docmcEnglish.pdf |binary
inst/doc/docmcEnglish.rnw |only
inst/doc/mc2dsaumon.eps |only
inst/doc/mc2dsaumon.pdf |only
man/dmultinomial.Rd | 5 -
man/extractvar.Rd |only
man/lhs.Rd | 2
man/mcratio.Rd |only
man/mcstoc.Rd | 15 ++--
man/plot.mc.Rd | 25 +++---
man/plot.tornado.Rd | 7 +
man/rtrunc.Rd | 11 ++
32 files changed, 346 insertions(+), 165 deletions(-)
Title: Modelization for Functional AutoRegressive processes
Diff between far versions 0.6-2 dated 2007-10-02 and 0.6-3 dated 2010-03-09
Description: Modelizations and previsions functions for Functional
AutoRegressive processes using nonparametric methods:
functional kernel, estimation of the covariance operator in a
subspace, ...
Author: Damon Julien
Maintainer: Damon Julien
DESCRIPTION | 23 ++++++++++++-----------
NAMESPACE | 4 +++-
NEWS | 7 +++++++
R/fdata.R | 15 ++++++++++++++-
man/fdata.Rd | 1 +
man/interpol.matrix.Rd | 2 +-
man/simul.far.Rd | 8 ++++----
man/simul.far.wiener.Rd | 4 ++--
man/simul.farx.Rd | 8 ++++----
9 files changed, 48 insertions(+), 24 deletions(-)
Title: Measuring functional diversity (FD) from multiple traits, and
other tools for functional ecology
Diff between FD versions 1.0-5 dated 2009-11-30 and 1.0-7 dated 2010-03-09
Description: FD is a package to compute different multidimensional FD
indices. It implements a distance-based framework to measure FD
that allows any number and type of functional traits, and can
also consider species relative abundances. It also contains
other useful tools for functional ecology.
Author: Etienne Laliberté, Bill Shipley
Maintainer: Etienne Laliberté
DESCRIPTION | 8 +--
R/maxent.R | 129 ++++++++++++++++++++++++++++++++---------------------
R/maxent.test.R |only
inst/CITATION | 8 ++-
inst/NEWS | 11 ++++
man/FD-package.Rd | 8 +--
man/dbFD.Rd | 8 +--
man/fdisp.Rd | 10 ++--
man/maxent.Rd | 59 +++++++++++++-----------
man/maxent.test.Rd |only
man/simul.dbFD.Rd | 2
src/itscale5.f |only
12 files changed, 146 insertions(+), 97 deletions(-)
Title: Provides a GUI to several statistical methods useful for causal
assessment.
Diff between CADStat versions 2.1-21 dated 2009-06-29 and 2.2-2 dated 2010-03-09
Description: Using JGR, provides a GUI to several statistical methods -
scatterplot, boxplot, linear regression, generalized linear
regression, quantile, regression, conditional probability
calculations, and regression trees.
Author: Lester Yuan, Tom Stockton, Doug Bronson, Pasha Minallah, and
Mark Fitzgerald
Maintainer: Lester Yuan
CADStat-2.1-21/CADStat/R/JGRMessageBox.r |only
CADStat-2.1-21/CADStat/R/bioinfer.new.JGR.R |only
CADStat-2.1-21/CADStat/R/boxplot.JGR.R |only
CADStat-2.1-21/CADStat/chm |only
CADStat-2.1-21/CADStat/inst/.svn |only
CADStat-2.1-21/CADStat/inst/doc/.svn |only
CADStat-2.1-21/CADStat/inst/doc/CADStat.JGR.odt |only
CADStat-2.1-21/CADStat/inst/doc/bioinfer.JGR.odt |only
CADStat-2.1-21/CADStat/inst/doc/boxplot.JGR.odt |only
CADStat-2.1-21/CADStat/inst/doc/conditionalprob.JGR.odt |only
CADStat-2.1-21/CADStat/inst/doc/cor.JGR.odt |only
CADStat-2.1-21/CADStat/inst/doc/glm.pred.JGR.odt |only
CADStat-2.1-21/CADStat/inst/doc/lm.JGR.odt |only
CADStat-2.1-21/CADStat/inst/doc/loaddata.odt |only
CADStat-2.1-21/CADStat/inst/doc/rpart.JGR.odt |only
CADStat-2.1-21/CADStat/inst/doc/rq.JGR.odt |only
CADStat-2.1-21/CADStat/inst/doc/scatterplot.JGR.odt |only
CADStat-2.1-21/CADStat/inst/java/cadstat-src |only
CADStat-2.1-21/CADStat/inst/java/cadstat-src.zip |only
CADStat-2.1-21/CADStat/inst/java/cadstat.jar |only
CADStat-2.1-21/CADStat/inst/java/cadstat.jar.old |only
CADStat-2.1-21/CADStat/inst/java/cadstat.jar.old2 |only
CADStat-2.1-21/CADStat/inst/java/swing-layout-1.0.3.jar |only
CADStat-2.1-21/CADStat/inst/workspace |only
CADStat-2.1-21/CADStat/man/boxplot.JGR.Rd |only
CADStat-2.2-2/CADStat/DESCRIPTION | 8
CADStat-2.2-2/CADStat/R/CADStat.help.R | 5
CADStat-2.2-2/CADStat/R/JGRMessageBox.R |only
CADStat-2.2-2/CADStat/R/bioinfer.JGR.R |only
CADStat-2.2-2/CADStat/R/buildresultsXML.R | 1
CADStat-2.2-2/CADStat/R/bxplot.JGR.R |only
CADStat-2.2-2/CADStat/R/conditionalprob.JGR.R | 49 +-
CADStat-2.2-2/CADStat/R/cor.JGR.R | 102 ++---
CADStat-2.2-2/CADStat/R/glm.JGR.R | 191 +++++------
CADStat-2.2-2/CADStat/R/glm.pred.JGR.R | 122 ++++---
CADStat-2.2-2/CADStat/R/pca.fa.JGR.R |only
CADStat-2.2-2/CADStat/R/rpart.JGR.R | 35 +-
CADStat-2.2-2/CADStat/R/rq.JGR.R | 137 ++++---
CADStat-2.2-2/CADStat/R/scatterplot2.JGR.R | 189 ++++------
CADStat-2.2-2/CADStat/R/zzz.R | 22 -
CADStat-2.2-2/CADStat/data |only
CADStat-2.2-2/CADStat/inst/doc/bioinfer.JGR-img1.png |binary
CADStat-2.2-2/CADStat/inst/doc/bioinfer.JGR.html | 76 ++--
CADStat-2.2-2/CADStat/inst/doc/pca.JGR-img1.png |only
CADStat-2.2-2/CADStat/inst/doc/pca.fa.JGR.html |only
CADStat-2.2-2/CADStat/inst/doc/pca.fa.JGR_html_70837ecc.png |only
CADStat-2.2-2/CADStat/inst/doc/pca.fa.JGR_html_7b2961fb.png |only
CADStat-2.2-2/CADStat/inst/doc/pca.fa.JGR_html_m5798ce7b.png |only
CADStat-2.2-2/CADStat/inst/doc/trait.stat.JGR.html |only
CADStat-2.2-2/CADStat/inst/doc/trait.tool-img1.png |only
CADStat-2.2-2/CADStat/inst/java/CADStat.jar |only
CADStat-2.2-2/CADStat/inst/menu/menu.xml | 40 --
CADStat-2.2-2/CADStat/man/bioinfer.JGR.Rd |only
CADStat-2.2-2/CADStat/man/bxplot.JGR.Rd |only
CADStat-2.2-2/CADStat/man/pca.fa.JGR.Rd |only
55 files changed, 487 insertions(+), 490 deletions(-)