Title: Univariate outlier detection
Diff between extremevalues versions 1.0 dated 2009-12-03 and 2.0 dated 2010-03-10
Description: Detect extreme values in onedimensional data
Author: Mark van der Loo
Maintainer: Mark van der Loo
extremevalues-1.0/extremevalues/CITATION |only
extremevalues-1.0/extremevalues/R/zzz.r |only
extremevalues-2.0/extremevalues/DESCRIPTION | 10 -
extremevalues-2.0/extremevalues/NAMESPACE | 9 +
extremevalues-2.0/extremevalues/R/fitExponential.r | 5
extremevalues-2.0/extremevalues/R/getExponentialLimit.r | 12 +
extremevalues-2.0/extremevalues/R/getLognormalLimit.r | 10 +
extremevalues-2.0/extremevalues/R/getLplusLmin.r |only
extremevalues-2.0/extremevalues/R/getNormalLimit.r | 7 -
extremevalues-2.0/extremevalues/R/getOutliers.r | 46 +------
extremevalues-2.0/extremevalues/R/getOutliersI.r |only
extremevalues-2.0/extremevalues/R/getOutliersII.r |only
extremevalues-2.0/extremevalues/R/getParetoLimit.r | 8 +
extremevalues-2.0/extremevalues/R/getWeibullLimit.r | 7 -
extremevalues-2.0/extremevalues/R/outlierPlot.r | 53 +-------
extremevalues-2.0/extremevalues/R/plotMethodII.r |only
extremevalues-2.0/extremevalues/R/qqExponentialLimit.r |only
extremevalues-2.0/extremevalues/R/qqFitPlot.r |only
extremevalues-2.0/extremevalues/R/qqLognormalLimit.r |only
extremevalues-2.0/extremevalues/R/qqNormalLimit.r |only
extremevalues-2.0/extremevalues/R/qqParetoLimit.r |only
extremevalues-2.0/extremevalues/R/qqWeibullLimit.r |only
extremevalues-2.0/extremevalues/inst/CITATION |only
extremevalues-2.0/extremevalues/inst/doc/extremevalues.pdf |binary
extremevalues-2.0/extremevalues/listOfChanges.txt |only
extremevalues-2.0/extremevalues/man/extremevalues.Rd |only
extremevalues-2.0/extremevalues/man/fitFunctions.Rd | 15 +-
extremevalues-2.0/extremevalues/man/getLimit.Rd | 24 ++-
extremevalues-2.0/extremevalues/man/getOutliers.Rd | 83 +++++++------
extremevalues-2.0/extremevalues/man/getQQLimit.Rd |only
extremevalues-2.0/extremevalues/man/outlierPlot.Rd | 45 ++++---
31 files changed, 177 insertions(+), 157 deletions(-)
Title: SQLite interface for R
Diff between RSQLite versions 0.8-3 dated 2010-02-11 and 0.8-4 dated 2010-03-10
Description: Database Interface R driver for SQLite. This package
embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the
SQLite engine (version 3.6.22) is included.
Author: David A. James
Maintainer: Seth Falcon
RSQLite-0.8-3/RSQLite/a.out.dSYM |only
RSQLite-0.8-4/RSQLite/DESCRIPTION | 10
RSQLite-0.8-4/RSQLite/R/SQLite.R | 2
RSQLite-0.8-4/RSQLite/R/SQLiteSupport.R | 4
RSQLite-0.8-4/RSQLite/R/zzz.R | 6
RSQLite-0.8-4/RSQLite/TAGS |only
RSQLite-0.8-4/RSQLite/configure | 2
RSQLite-0.8-4/RSQLite/configure.in | 2
RSQLite-0.8-4/RSQLite/inst/NEWS | 34
RSQLite-0.8-4/RSQLite/inst/UnitTests/bind_data_test.R | 91
RSQLite-0.8-4/RSQLite/inst/UnitTests/dbConnect_test.R | 2
RSQLite-0.8-4/RSQLite/inst/UnitTests/dbGetInfo_test.R | 2
RSQLite-0.8-4/RSQLite/man/dbSendQuery-methods.Rd | 63
RSQLite-0.8-4/RSQLite/src/Makevars.win | 3
RSQLite-0.8-4/RSQLite/src/RS-SQLite.c | 2190 ++---
RSQLite-0.8-4/RSQLite/src/RS-SQLite.h | 11
RSQLite-0.8-4/RSQLite/src/param_binding.c |only
RSQLite-0.8-4/RSQLite/src/param_binding.h |only
RSQLite-0.8-4/RSQLite/src/sqlite.h |only
RSQLite-0.8-4/RSQLite/src/sqlite/sqlite3.c | 7038 ++++++++++--------
RSQLite-0.8-4/RSQLite/src/sqlite/sqlite3.h | 2871 +++----
21 files changed, 6629 insertions(+), 5702 deletions(-)
Title: Interactive exploratory spatial data analysis
Diff between GeoXp versions 1.4.1 dated 2010-03-10 and 1.4.2 dated 2010-03-10
Description: GeoXp is a tool for researchers in spatial statistics,
spatial econometrics, geography, ecology etc allowing to link
dynamically statistical plots with elementary maps. This
coupling consists in the fact that the selection of a zone on
the map results in the automatic highlighting of the
corresponding points on the statistical graph or reversely the
selection of a portion of the graph results in the automatic
highlighting of the corresponding points on the map. GeoXp
includes tools from different areas of spatial statistics
including geostatistics as well as spatial econometrics and
point processes. Besides elementary plots like boxplots,
histograms or simple scatterplos, GeoXp also couples with maps
Moran scatterplots, variogram cloud, Lorentz Curves,...In order
to make the most of the multidimensionality of the data, GeoXp
includes some dimension reduction techniques such as PCA.
Author: Yves Aragon, Thibault Laurent, Lauriane Robidou, Anne
Ruiz-Gazen, Christine Thomas-Agnan
Maintainer: Thibault Laurent
DESCRIPTION | 8 +-
inst/doc/presentation_geoxp.pdf | 110 ++++++++++++++++++++--------------------
man/GeoXp-package.Rd | 4 -
man/angleplotmap.Rd | 2
man/barmap.Rd | 2
man/boxplotmap.Rd | 2
man/dbledensitymap.Rd | 2
man/densitymap.Rd | 4 -
man/driftmap.Rd | 4 -
man/histobarmap.Rd | 2
man/histomap.Rd | 2
man/polyboxplotmap.Rd | 2
12 files changed, 72 insertions(+), 72 deletions(-)
Title: Topic models
Diff between topicmodels versions 0.0-3 dated 2009-11-06 and 0.0-4 dated 2010-03-10
Description: Provides an interface to the C code for Latent Dirichlet
Allocation (LDA) models and Correlated Topics Models (CTM) by
David M. Blei and the C++ code for fitting LDA models using
Gibbs sampling by Xuan-Hieu Phan.
Author: Bettina Gruen and Kurt Hornik
Maintainer: Bettina Gruen
DESCRIPTION | 10 +++++-----
NEWS |only
R/allclasses.R | 7 ++++---
R/ctm.R | 2 +-
R/lda.R | 2 +-
R/utils.R | 4 ++--
inst/NEWS |only
inst/doc/topicmodels.Rnw | 4 ++--
inst/doc/topicmodels.pdf |binary
man/associatedpress.Rd | 4 ++--
man/build_graph.Rd | 10 +++++-----
man/ctm.Rd | 7 ++++---
man/lda.Rd | 17 ++++++++++-------
man/tmcontrol-class.Rd | 2 +-
14 files changed, 37 insertions(+), 32 deletions(-)
Title: Efficient Estimation of Covariance and (Partial) Correlation
Diff between corpcor versions 1.5.5 dated 2010-01-14 and 1.5.6 dated 2010-03-10
Description: This package implements a James-Stein-type shrinkage
estimator for the covariance matrix, with separate shrinkage
for variances and correlations. The details of the method are
explained in Sch\"afer and Strimmer (2005) and Opgen-Rhein and
Strimmer (2007). The approach is both computationally as well
as statistically very efficient, it is applicable to "small n,
large p" data, and always returns a positive definite and
well-conditioned covariance matrix. In addition to inferring
the covariance matrix the package also provides shrinkage
estimators for partial correlations, partial variances, and
regression coefficients. The inverse of the covariance and
correlation matrix can be efficiently computed, and as well as
any arbitrary power of the shrinkage correlation matrix.
Furthermore, functions are available for fast singular value
decomposition, for computing the pseudoinverse, and for
checking the rank and positive definiteness of a matrix.
Author: Juliane Schaefer, Rainer Opgen-Rhein, and Korbinian Strimmer.
Maintainer: Korbinian Strimmer
DESCRIPTION | 8 ++++----
NEWS | 27 ++++-----------------------
R/pvt.get.lambda.R | 18 +++++++++++-------
3 files changed, 19 insertions(+), 34 deletions(-)
More information about MplusAutomation at CRAN
Permanent link
Title: analysis of complex survey samples
Diff between survey versions 3.20 dated 2010-02-09 and 3.21 dated 2010-03-10
Description: Summary statistics, generalised linear models, cumulative
link models, Cox models, loglinear models, and general maximum
pseudolikelihood estimation for multistage stratified,
cluster-sampled, unequally weighted survey samples. Variances
by Taylor series linearisation or replicate weights.
Post-stratification, calibration, and raking. Two-phase
subsampling designs. Graphics. Predictive margins by direct
standardization. PPS sampling without replacement. Principal
components, factor analysis.
Author: Thomas Lumley
Maintainer: Thomas Lumley
DESCRIPTION | 6 +--
INDEX | 6 +--
NAMESPACE | 4 +-
R/grake.R | 86 ++++++++++++++++++++++++++++++++++++++++++++++++++--
R/survey.R | 2 -
data/api.rda |binary
inst/CITATION | 4 +-
inst/NEWS | 8 ++++
inst/doc/domain.pdf |binary
inst/doc/epi.pdf |binary
inst/doc/phase1.pdf |binary
inst/doc/pps.pdf |binary
inst/doc/survey.pdf |binary
man/api.Rd | 3 +
man/calibrate.Rd | 51 +++++++++++++++++++++---------
man/svyby.Rd | 2 -
man/svyquantile.Rd | 2 -
man/trimWeights.Rd |only
18 files changed, 142 insertions(+), 32 deletions(-)
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Diff between spatstat versions 1.17-6 dated 2010-02-09 and 1.18-0 dated 2010-03-10
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Also
supports three-dimensional point patterns. Contains functions
for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, pixel images and
tessellations. Point process models can be fitted to point
pattern data. Cluster type models are fitted by the method of
minimum contrast. Very general Gibbs point process models can
be fitted to point pattern data using a function ppm similar to
lm or glm. Models may include dependence on covariates,
interpoint interaction and dependence on marks. Fitted models
can be simulated automatically. Also provides facilities for
formal inference (such as chi-squared tests) and model
diagnostics (including simulation envelopes, residuals,
residual plots and Q-Q plots).
Author: Adrian Baddeley
Maintainer: Adrian Baddeley
spatstat-1.17-6/spatstat/INDEX |only
spatstat-1.17-6/spatstat/man/setmarks.Rd |only
spatstat-1.18-0/spatstat/DESCRIPTION | 8
spatstat-1.18-0/spatstat/NEWS | 56
spatstat-1.18-0/spatstat/R/Gmulti.S | 4
spatstat-1.18-0/spatstat/R/Kmulti.S | 14
spatstat-1.18-0/spatstat/R/Kmulti.inhom.R | 14
spatstat-1.18-0/spatstat/R/alltypes.R | 4
spatstat-1.18-0/spatstat/R/applynbd.R | 4
spatstat-1.18-0/spatstat/R/areadiff.R | 2
spatstat-1.18-0/spatstat/R/by.ppp.R | 2
spatstat-1.18-0/spatstat/R/clip.psp.R | 4
spatstat-1.18-0/spatstat/R/cut.ppp.R | 10
spatstat-1.18-0/spatstat/R/density.ppp.R | 4
spatstat-1.18-0/spatstat/R/diagnoseppm.R | 2
spatstat-1.18-0/spatstat/R/distan3D.R | 2
spatstat-1.18-0/spatstat/R/envelope.R | 21
spatstat-1.18-0/spatstat/R/images.R | 14
spatstat-1.18-0/spatstat/R/iplot.R | 4
spatstat-1.18-0/spatstat/R/kppm.R | 2
spatstat-1.18-0/spatstat/R/kstest.R | 136 +
spatstat-1.18-0/spatstat/R/markcorr.R | 8
spatstat-1.18-0/spatstat/R/marks.R | 49
spatstat-1.18-0/spatstat/R/marktable.R | 4
spatstat-1.18-0/spatstat/R/morphology.R | 6
spatstat-1.18-0/spatstat/R/nearestsegment.R | 2
spatstat-1.18-0/spatstat/R/nnclean.R | 27
spatstat-1.18-0/spatstat/R/nncorr.R | 14
spatstat-1.18-0/spatstat/R/pcfmulti.inhom.R | 8
spatstat-1.18-0/spatstat/R/plot.ppp.S | 31
spatstat-1.18-0/spatstat/R/ppp.S | 31
spatstat-1.18-0/spatstat/R/psp2pix.R |only
spatstat-1.18-0/spatstat/R/quadratcount.R | 2
spatstat-1.18-0/spatstat/R/quadrattest.R | 4
spatstat-1.18-0/spatstat/R/quadscheme.S | 8
spatstat-1.18-0/spatstat/R/randommk.R | 2
spatstat-1.18-0/spatstat/R/randomonlines.R | 25
spatstat-1.18-0/spatstat/R/rlabel.R | 15
spatstat-1.18-0/spatstat/R/rmh.default.R | 2
spatstat-1.18-0/spatstat/R/split.ppp.R | 52
spatstat-1.18-0/spatstat/R/summary.ppm.R | 2
spatstat-1.18-0/spatstat/R/tess.R | 2
spatstat-1.18-0/spatstat/R/unique.ppp.R | 4
spatstat-1.18-0/spatstat/R/util.S | 20
spatstat-1.18-0/spatstat/R/window.S | 14
spatstat-1.18-0/spatstat/R/wingeom.S | 68
spatstat-1.18-0/spatstat/data/anemones.rda |binary
spatstat-1.18-0/spatstat/data/ants.rda |binary
spatstat-1.18-0/spatstat/data/bei.rda |binary
spatstat-1.18-0/spatstat/data/chorley.rda |binary
spatstat-1.18-0/spatstat/data/finpines.rda |binary
spatstat-1.18-0/spatstat/data/heather.rda |binary
spatstat-1.18-0/spatstat/data/murchison.rda |binary
spatstat-1.18-0/spatstat/data/nbfires.rda |binary
spatstat-1.18-0/spatstat/data/nztrees.rda |binary
spatstat-1.18-0/spatstat/data/ponderosa.rda |binary
spatstat-1.18-0/spatstat/data/shapley.rda |binary
spatstat-1.18-0/spatstat/data/urkiola.rda |binary
spatstat-1.18-0/spatstat/demo/data.R | 17
spatstat-1.18-0/spatstat/inst/doc/shapefiles.pdf | 1787 +++++++++++------------
spatstat-1.18-0/spatstat/man/as.data.frame.im.Rd |only
spatstat-1.18-0/spatstat/man/as.mask.psp.Rd |only
spatstat-1.18-0/spatstat/man/envelope.Rd | 21
spatstat-1.18-0/spatstat/man/finpines.Rd | 19
spatstat-1.18-0/spatstat/man/internal.Rd | 22
spatstat-1.18-0/spatstat/man/kstest.Rd | 32
spatstat-1.18-0/spatstat/man/marks.Rd |only
spatstat-1.18-0/spatstat/man/nbfires.Rd | 399 ++---
spatstat-1.18-0/spatstat/man/nnclean.Rd | 47
spatstat-1.18-0/spatstat/man/pixellate.Rd | 12
spatstat-1.18-0/spatstat/man/pixellate.psp.Rd |only
spatstat-1.18-0/spatstat/man/plot.ppp.Rd | 12
spatstat-1.18-0/spatstat/man/ppp.Rd | 28
spatstat-1.18-0/spatstat/man/ppp.object.Rd | 4
spatstat-1.18-0/spatstat/man/rlabel.Rd | 2
spatstat-1.18-0/spatstat/man/shapley.Rd | 16
spatstat-1.18-0/spatstat/man/spatstat-package.Rd | 10
spatstat-1.18-0/spatstat/man/split.ppp.Rd | 30
spatstat-1.18-0/spatstat/src/seg2pix.c |only
79 files changed, 1758 insertions(+), 1407 deletions(-)
Title: Simulation of ecological (and other) dynamic systems
Diff between simecol versions 0.6-9 dated 2009-09-04 and 0.6-10 dated 2010-03-10
Description: simecol is an object oriented framework to simulate
ecological (and other) dynamic systems. It can be used for
differential equations, individual-based (or agent-based) and
other models as well. The package helps to organize scenarios
(avoids copy and paste) and improves readability and usability
of code.
Author: Thomas Petzoldt
Maintainer: Thomas Petzoldt
simecol-0.6-10/simecol/DESCRIPTION | 12 +--
simecol-0.6-10/simecol/R/iteration.R | 14 ++--
simecol-0.6-10/simecol/demo/jss.R | 4 -
simecol-0.6-10/simecol/inst/FAQ.txt | 1
simecol-0.6-10/simecol/inst/NEWS | 42 +++----------
simecol-0.6-10/simecol/inst/doc/a-simecol-introduction.R |only
simecol-0.6-10/simecol/inst/doc/a-simecol-introduction.Rnw |only
simecol-0.6-10/simecol/inst/doc/a-simecol-introduction.pdf |only
simecol-0.6-10/simecol/inst/doc/b-simecol-howtos.R |only
simecol-0.6-10/simecol/inst/doc/b-simecol-howtos.Rnw |only
simecol-0.6-10/simecol/inst/doc/b-simecol-howtos.pdf |only
simecol-0.6-10/simecol/inst/doc/examples |only
simecol-0.6-10/simecol/inst/doc/index.html | 6 -
simecol-0.6-10/simecol/inst/doc/simecol.bib | 22 ++++++
simecol-0.6-10/simecol/man/diffusion.Rd | 2
simecol-0.6-10/simecol/man/fitOdeModel.Rd | 11 +++
simecol-0.6-10/simecol/man/fixParms.Rd | 7 +-
simecol-0.6-10/simecol/man/initialize-methods.Rd | 2
simecol-0.6-10/simecol/man/iteration.Rd | 4 -
simecol-0.6-10/simecol/man/observer.Rd |only
simecol-0.6-10/simecol/man/parms.Rd | 20 ++----
simecol-0.6-10/simecol/man/sim.Rd | 7 +-
simecol-0.6-10/simecol/man/simecol-package.Rd | 2
simecol-0.6-9/simecol/inst/doc/simecol-howtos.Rnw |only
simecol-0.6-9/simecol/inst/doc/simecol-howtos.pdf |only
simecol-0.6-9/simecol/inst/doc/simecol-introduction.Rnw |only
simecol-0.6-9/simecol/inst/doc/simecol-introduction.pdf |only
simecol-0.6-9/simecol/inst/examples |only
28 files changed, 86 insertions(+), 70 deletions(-)
Title: Model-Based Boosting
Diff between mboost versions 2.0-2 dated 2010-03-05 and 2.0-3 dated 2010-03-10
Description: Functional gradient descent algorithm (boosting) for
optimizing general risk functions utilizing component-wise
(penalised) least squares estimates or regression trees as
base-learners for fitting generalized linear, additive and
interaction models to potentially high-dimensional data.
Author: Torsten Hothorn, Peter Buehlmann, Thomas Kneib, Matthias Schmid
and Benjamin Hofner
Maintainer: Torsten Hothorn
DESCRIPTION | 8
NEWS | 25 +
R/bl.R | 65 ++-
R/mboost.R | 44 +-
R/methods.R | 85 +++-
R/plot.R | 80 ++-
inst/CHANGES | 25 +
inst/doc/SurvivalEnsembles.pdf |binary
inst/doc/mboost_illustrations.pdf |binary
man/Family.Rd | 4
man/baselearners.Rd | 710 ++++++++++++++++++-----------------
man/control.Rd | 4
man/glmboost.Rd | 16
man/mboost_package.Rd | 4
man/methods.Rd | 41 +-
tests/Examples/mboost-Ex.Rout.save | 190 +++++++--
tests/bugfixes.R | 58 ++
tests/bugfixes.Rout.save | 61 ++-
tests/mboost_illustrations.Rout.save | 31 -
tests/regtest-glmboost.R | 24 -
tests/regtest-glmboost.Rout.save | 31 -
21 files changed, 965 insertions(+), 541 deletions(-)
Title: Iterative Bias Reduction
Diff between ibr versions 1.2 dated 2009-11-16 and 1.2.1 dated 2010-03-10
Description: an R package for multivariate smoothing
Author: Pierre-Andre Cornillon, Nicolas Hengartner, Eric Matzner-Lober
Maintainer: Pierre-Andre Cornillon
DESCRIPTION | 8 +++----
R/forward.R | 65 ++++++++++++++++++++++++++++-----------------------------
R/ibr.R | 4 +--
R/plot.ibr.R | 2 -
man/forward.Rd | 9 ++++++-
5 files changed, 46 insertions(+), 42 deletions(-)
Title: Interactive exploratory spatial data analysis
Diff between GeoXp versions 1.4 dated 2009-11-05 and 1.4.1 dated 2010-03-10
Description: GeoXp is a tool for researchers in spatial statistics,
spatial econometrics, geography, ecology etc allowing to link
dynamically statistical plots with elementary maps. This
coupling consists in the fact that the selection of a zone on
the map results in the automatic highlighting of the
corresponding points on the statistical graph or reversely the
selection of a portion of the graph results in the automatic
highlighting of the corresponding points on the map. GeoXp
includes tools from different areas of spatial statistics
including geostatistics as well as spatial econometrics and
point processes. Besides elementary plots like boxplots,
histograms or simple scatterplos, GeoXp also couples with maps
Moran scatterplots, variogram cloud, Lorentz Curves,...In order
to make the most of the multidimensionality of the data, GeoXp
includes some dimension reduction techniques such as PCA.
Author: Yves Aragon, Thibault Laurent, Lauriane Robidou, Anne
Ruiz-Gazen, Christine Thomas-Agnan
Maintainer: Thibault Laurent
DESCRIPTION | 6
inst/doc/presentation_geoxp.pdf | 2938 +++++++++++++++++++---------------------
man/barmap.Rd | 5
man/dbledensitymap.Rd | 4
man/dblehistomap.Rd | 4
man/histobarmap.Rd | 5
6 files changed, 1463 insertions(+), 1499 deletions(-)