Thu, 11 Mar 2010

Package oc updated to version 0.07 with previous version 0.04 dated 2008-09-03

Title: OC Roll Call Analysis Software.
Description: Estimates Optimal Classification scores from roll call votes supplied though a 'rollcall' object from package 'pscl'.
Author: Keith Poole , Jeffrey Lewis , James Lo and Royce Carroll
Maintainer: Jeffrey Lewis

Diff between oc versions 0.04 dated 2008-09-03 and 0.07 dated 2010-03-11

 oc-0.04/oc/inst/doc/Rplots.ps  |only
 oc-0.07/oc/DESCRIPTION         |   25 
 oc-0.07/oc/inst/doc/Rplots.pdf |only
 oc-0.07/oc/inst/doc/oc.pdf     |binary
 oc-0.07/oc/src/Makevars        |    2 
 oc-0.07/oc/src/Makevars.win    |    4 
 oc-0.07/oc/src/oc.f90          |11163 ++++++++++++++++++++---------------------
 7 files changed, 5680 insertions(+), 5514 deletions(-)

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New package RcppArmadillo with initial version 0.1.0
Package: RcppArmadillo
Type: Package
Title: Rcpp/Armadillo translation layer
Version: 0.1.0
Date: $Date: 2010-03-11 11:24:54 -0600 (Thu, 11 Mar 2010) $
Author: Romain Francois and Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel and Romain Francois
Description: R and Armadillo integration using Rcpp Armadillo is a C++ linear algebra library aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. A delayed evaluation approach is employed (during compile time) to combine several operations into one and reduce (or eliminate) the need for temporaries. This is accomplished through recursive templates and template meta-programming. This library is useful if C++ has been decided as the language of choice (due to speed and/or integration capabilities), rather than another language. This Armadillo / C integration provides a nice illustration of the capabilities of the Rcpp package for seamless R and C++ integration/
License: GPL (>= 2)
LazyLoad: yes
Depends: Rcpp (>= 0.7.8)
SystemRequirements: Armadillo (>= 0.6.10)
URL: http://arma.sourceforge.net/, http://cran.r-project.org/package=RcppArmadillo
OS_type: unix
Packaged: 2010-03-11 17:28:51 UTC; edd
Repository: CRAN
Date/Publication: 2010-03-11 20:23:27

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Package MplusAutomation updated to version 0.2-2 with previous version 0.2-1 dated 2010-03-10

Title: Automating Mplus Model Estimation and Interpretation
Description: The MplusAutomation package leverages the flexibility of the R language to automate latent variable model estimation and interpretation using Mplus, a powerful latent variable modeling program developed by Muthen and Muthen (www.statmodel.com). Specifically, MplusAutomation provides routines for creating related groups of models, running batches of models, and extracting and tabulating model parameters and fit statistics.
Author: Michael Hallquist
Maintainer: Michael Hallquist

Diff between MplusAutomation versions 0.2-1 dated 2010-03-10 and 0.2-2 dated 2010-03-11

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 MplusAutomation-0.2-2/MplusAutomation/DESCRIPTION                    |    8 
 MplusAutomation-0.2-2/MplusAutomation/NAMESPACE                      |    2 
 MplusAutomation-0.2-2/MplusAutomation/R/parseOutput.R                |  211 ++++++++--
 MplusAutomation-0.2-2/MplusAutomation/man/MplusAutomation-package.Rd |    8 
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 10 files changed, 195 insertions(+), 50 deletions(-)

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New package stratification with initial version 2.0-0
Package: stratification
Type: Package
Title: Univariate stratification of Survey Populations
Version: 2.0-0
Date: 2010-03-11
Author: Sophie Baillargeon and Louis-Paul Rivest
Maintainer: Sophie Baillargeon
Description: This package performs univariate stratification of survey populations. The main function implements a generalization of the Lavallee-Hidiroglou method of stratum construction. The generalized method takes into account a discrepancy between the stratification variable and the survey variable. The determination of the optimal boundaries also incorporate, if desired, an anticipated non-response, a take-all stratum for large units, and a take-none stratum for small units. The well known cumulative root frequency rule of Dalenius and Hodges and the geometric rule of Gunning and Horgan are also implemented.
License: GPL-2
Packaged: 2010-03-11 14:48:21 UTC; sobai2
Repository: CRAN
Date/Publication: 2010-03-11 16:37:58

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New package poistweedie with initial version 1.0
Package: poistweedie
Version: 1.0
Date: 2010-02-28
Title: Poisson-Tweedie exponential family models
Author: David Pechel Cactcha, Laure Pauline Fotso and Celestin C Kokonendji
Maintainer: David Pechel Cactcha
Depends: R (>= 2.10.0)
Description: Simulation of models Poisson-Tweedie.
License: GPL (>= 2)
URL: http://www.r-project.org/package=poistweedie
Packaged: 2010-03-11 16:06:00 UTC; administrateur
Repository: CRAN
Date/Publication: 2010-03-11 16:51:41

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New package secr with initial version 1.3.0
Package: secr
Type: Package
Title: Spatially explicit capture-recapture
Version: 1.3.0
Depends: R (>= 2.10.0), abind, MASS, nlme, stats
Date: 2010-03-11
Author: Murray Efford
Maintainer: Murray Efford
Description: Estimate animal population density with capture--recapture data from an array of passive dectors (traps). Models incorporating distance-dependent detection are fitted by maximizing the likelihood. Tools are included for data manipulation and model selection.
License: GPL (>= 2)
ZipData: yes
URL: http://www.otago.ac.nz/density
Packaged: 2010-03-11 10:08:36 UTC; Murray
Repository: CRAN
Date/Publication: 2010-03-11 16:37:46

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Package memisc updated to version 0.95-26 with previous version 0.95-23 dated 2009-11-12

Title: Tools for Management of Survey Data, Graphics, Programming, Statistics, and Simulation
Description: One of the aims of this package is to make life easier for useRs who deal with survey data sets. It provides an infrastructure for the management of survey data including value labels, definable missing values, recoding of variables, production of code books, and import of (subsets of) SPSS and Stata files. Further, it provides functionality to produce tables and data frames of arbitrary descriptive statistics and (almost) publication-ready tables of regression model estimates. Also some convenience tools for graphics, programming, and simulation are provided.
Author: Martin Elff
Maintainer: Martin Elff

Diff between memisc versions 0.95-23 dated 2009-11-12 and 0.95-26 dated 2010-03-11

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 memisc-0.95-26/memisc/DESCRIPTION         |   10 -
 memisc-0.95-26/memisc/R/cases.R           |   16 +-
 memisc-0.95-26/memisc/R/dataset-methods.R |    8 -
 memisc-0.95-26/memisc/R/mtable.R          |  216 +++++++++++++-----------------
 memisc-0.95-26/memisc/R/percent.R         |    3 
 memisc-0.95-26/memisc/R/tolatex-ftable.R  |    6 
 memisc-0.95-26/memisc/R/tolatex-matrix.R  |   56 ++++++-
 memisc-0.95-26/memisc/inst/NEWS           |   21 ++
 memisc-0.95-26/memisc/inst/doc/anes48.Rnw |    2 
 memisc-0.95-26/memisc/inst/doc/anes48.pdf |binary
 memisc-0.95-26/memisc/man/toLatexExtra.Rd |   19 ++
 12 files changed, 203 insertions(+), 154 deletions(-)

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Package RFOC updated to version 1.0-9 with previous version 1.0-6 dated 2009-10-15

Title: Graphics for Spherical Distributions and Earthquake Focal Mechanisms
Description: Graphics for statistics on a sphere, as applied to geological fault data, crystalogaphy, earthquake focal mechanisms, radiation patterns, ternary plots and geographical/geological maps.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees

Diff between RFOC versions 1.0-6 dated 2009-10-15 and 1.0-9 dated 2010-03-11

 DESCRIPTION           |   10 +++++-----
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Package RFLPtools updated to version 1.1 with previous version 1.0 dated 2010-02-10

Title: Tools to analyse RFLP data
Description: RFLPtools provides functions to analyse DNA fragment samples (i.e. derived from RFLP-analysis) and standalone BLAST report files (i.e. DNA sequence analysis).
Author: Fabienne Flessa, Alexandra Kehl, Matthias Kohl
Maintainer: Matthias Kohl

Diff between RFLPtools versions 1.0 dated 2010-02-10 and 1.1 dated 2010-03-11

 DESCRIPTION            |    8 ++++----
 NEWS                   |only
 R/Gendist.R            |only
 R/read.blast.R         |    4 ++++
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 inst/doc/RFLPtools.Rnw |   33 ++++++++++++++++++++++-----------
 inst/doc/RFLPtools.pdf |binary
 man/0RFLP-package.Rd   |   12 ++++++++++--
 man/sim2dist.Rd        |   21 ++++++++++-----------
 man/simMatrix.Rd       |    8 +++++---
 11 files changed, 67 insertions(+), 37 deletions(-)

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Package MKmisc updated to version 0.6.1 with previous version 0.5 dated 2010-02-10

Title: Miscellaneous Functions from M. Kohl
Description: Miscellaneous Functions from M. Kohl
Author: Matthias Kohl
Maintainer: Matthias Kohl

Diff between MKmisc versions 0.5 dated 2010-02-10 and 0.6.1 dated 2010-03-11

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 9 files changed, 26 insertions(+), 20 deletions(-)

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New package DiceEval with initial version 1.0
Package: DiceEval
Title: Construction and evaluation of metamodels
Version: 1.0
Date: 2009-10-26
Author: D. Dupuy and C. Helbert
Maintainer: D. Dupuy
Description: Estimation, validation and prediction of metamodels (linear models, additive models, MARS and PolyMARS)
License: GPL-3
Depends: DiceKriging
Suggests: gam, akima, mda, polspline
Encoding: latin1
URL: http://www.dice-consortium.fr/
Packaged: 2010-03-11 11:27:43 UTC; dupuy
Repository: CRAN
Date/Publication: 2010-03-11 16:37:19

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New package CAVIAR with initial version 0.1-0
Package: CAVIAR
Version: 0.1-0
Date: 2010-02-24
Title: Cambial Activity and wood formation data processing, VIsualisation and Analysis using R
Author: Cyrille Rathgeber
Maintainer: Cyrille Rathgeber
Depends: R (>= 2.10.1)
Description: Allows processing, visualisation and analysis of data coming from cambial activity and wood formation monitoring studies.
License: GPL (>= 2)
LazyLoad: yes
URL: http://www.nancy.inra.fr/foret_bois_lerfob/personnels_de_l_umr/scientifiques/rathgeber_cyrille
Packaged: 2010-03-11 13:08:20 UTC; cyrillerathgeber
Repository: CRAN
Date/Publication: 2010-03-11 16:37:14

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Package sdef updated to version 1.5 with previous version 1.4 dated 2010-03-02

Title: Synthesizing List of Differentially Expressed Features
Description: The package performs two tests to evaluate if the experiments are associated and returns a list of interesting features common to all the experiments.
Author: Alberto Cassese, Marta Blangiardo
Maintainer: Alberto Cassese

Diff between sdef versions 1.4 dated 2010-03-02 and 1.5 dated 2010-03-11

 sdef-1.4/sdef/R/sdef-internal.R        |only
 sdef-1.5/sdef/DESCRIPTION              |    8 ++++----
 sdef-1.5/sdef/R/extractFeatures.R.R    |   12 ++++++------
 sdef-1.5/sdef/data/Example3Lists.rda   |binary
 sdef-1.5/sdef/data/Liver.Muscle.rda    |binary
 sdef-1.5/sdef/man/Example3Lists.Rd     |    4 ++--
 sdef-1.5/sdef/man/Liver.Muscle.Rd      |    4 ++--
 sdef-1.5/sdef/man/Tmc.Rd               |    2 +-
 sdef-1.5/sdef/man/baymod.Rd            |    2 +-
 sdef-1.5/sdef/man/createTable.Rd       |    2 +-
 sdef-1.5/sdef/man/extractFeatures.R.Rd |    2 +-
 sdef-1.5/sdef/man/extractFeatures.T.Rd |    2 +-
 sdef-1.5/sdef/man/ratio.Rd             |    2 +-
 sdef-1.5/sdef/man/sdef-package.Rd      |    4 ++--
 sdef-1.5/sdef/man/simulation.Rd        |    2 +-
 sdef-1.5/sdef/man/simulation.indep.Rd  |    2 +-
 16 files changed, 24 insertions(+), 24 deletions(-)

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Package pyramid updated to version 1.2 with previous version 1.1 dated 2010-01-06

Title: Functions to draw population pyramid
Description: Drawing population pyramid using (1) data.frame or (2) vectors. The former is named as pyramid() and the latter pyramids(), as lapper function of pyramid().
Author: Minato Nakazawa
Maintainer: Minato Nakazawa

Diff between pyramid versions 1.1 dated 2010-01-06 and 1.2 dated 2010-03-11

 DESCRIPTION    |    8 ++++----
 R/pyramid.R    |   15 +++++++++++----
 man/pyramid.Rd |   10 ++++++++--
 3 files changed, 23 insertions(+), 10 deletions(-)

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Package interval updated to version 0.9-9.6 with previous version 0.9-9.5 dated 2010-02-03

Title: Weighted Logrank Tests and NPMLE for interval censored data
Description: Functions to fit nonparametric survival curves, plot them, and perform logrank or Wilcoxon type tests.
Author: Michael P. Fay
Maintainer: Michael P. Fay

Diff between interval versions 0.9-9.5 dated 2010-02-03 and 0.9-9.6 dated 2010-03-11

 DESCRIPTION                |    8 
 NEWS                       |    6 
 R/SurvLR.R                 |    7 
 R/icfit.R                  |    2 
 inst/doc/Rplots.pdf        |    4 
 inst/doc/intervalPaper.pdf | 1275 ++++++++++++++++++++++-----------------------
 6 files changed, 657 insertions(+), 645 deletions(-)

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Package hergm updated to version 1.1 with previous version 1.0 dated 2010-02-21

Title: Hierarchical Exponential-Family Random Graph Models
Description: The R package 'hergm' implements Hierarchical Exponential-Family Random Graph Models (HERGMs), which can be used to model a wide range of relational data (networks). 'hergm' implements both simulation and Bayesian inference.
Author: Michael Schweinberger
Maintainer: Michael Schweinberger

Diff between hergm versions 1.0 dated 2010-02-21 and 1.1 dated 2010-03-11

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 hergm-1.1/hergm/R/hergm.set.mcmc.R       |    4 
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 hergm-1.1/hergm/src/MCMC.c               |    8 
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 22 files changed, 332 insertions(+), 333 deletions(-)

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Package TeachingSampling updated to version 1.4.9 with previous version 1.1.9 dated 2010-01-18

Title: Sampling designs and parameter estimation in finite population
Description: Foundations of inference in survey sampling
Author: Hugo Andres Gutierrez Rojas
Maintainer: Hugo Andres Gutierrez Rojas

Diff between TeachingSampling versions 1.1.9 dated 2010-01-18 and 1.4.9 dated 2010-03-11

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 16 files changed, 53 insertions(+), 30 deletions(-)

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New package RcppExamples with initial version 0.1.0
Package: RcppExamples
Title: Examples using Rcpp to interface R and C++
Version: 0.1.0
Date: $Date: 2010-03-10 20:30:45 -0600 (Wed, 10 Mar 2010) $
Author: Dirk Eddelbuettel and Romain Francois, based on code written during 2005 and 2006 by Dominick Samperi
Maintainer: Dirk Eddelbuettel and Romain Francois
Description: Examples for Seamless R and C++ integration The Rcpp package contains a C++ library that facilitates the integration of R and C++ in various ways. This package provides examples.
Depends: R (>= 2.10.0), Rcpp (>= 0.7.8)
Suggests: inline (>= 0.3.4), RUnit
SystemRequirements: None
URL: http://dirk.eddelbuettel.com/code/rcpp.html, http://romainfrancois.blog.free.fr/index.php?category/R-package/Rcpp
License: GPL (>= 2)
Packaged: 2010-03-11 02:31:01 UTC; edd
Repository: CRAN
Date/Publication: 2010-03-11 07:04:40

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