Title: Hierarchical Exponential-Family Random Graph Models
Diff between hergm versions 1.1 dated 2010-03-11 and 1.1-1 dated 2010-03-13
Description: The R package 'hergm' implements Hierarchical
Exponential-Family Random Graph Models (HERGMs), which can be
used to model a wide range of relational data (networks).
'hergm' implements both simulation and Bayesian inference.
Author: Michael Schweinberger
Maintainer: Michael Schweinberger
hergm-1.1-1/hergm/DESCRIPTION | 8 ++++----
hergm-1.1-1/hergm/R/hergm.postprocess.R | 9 +++++++--
hergm-1.1-1/hergm/R/hergm.preprocess.R | 3 ++-
hergm-1.1-1/hergm/R/hergm.relabel.R | 3 +--
hergm-1.1-1/hergm/demo/example.r | 3 ++-
hergm-1.1-1/hergm/man/hergm.postprocess.Rd | 3 +++
hergm-1.1-1/hergm/src/h_ergm.c | 2 ++
hergm-1.1/hergm/.Rd2dvi12966 |only
8 files changed, 21 insertions(+), 10 deletions(-)
Title: Power in a Group Sequential Design
Diff between PwrGSD versions 1.15 dated 2008-07-11 and 1.16 dated 2010-03-13
Description: Tools the evaluation of interim analysis plans for
sequentially monitored trials on a survival endpoint; tools to
construct efficacy and futility boundaries, for deriving power
of a sequential design at a specified alternative, template for
evaluating the performance of candidate plans at a set of time
varying alternatives.
Author: Grant Izmirlian
Maintainer: Grant Izmirlian
PwrGSD-1.15/PwrGSD/inst/doc/Ch6-GrpSeqBnds.Rd |only
PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1-fig1-LanDemets.eps |only
PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1-fig1-LanDemets.pdf |only
PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1-fig2-StochCurt.eps |only
PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1-fig2-StochCurt.pdf |only
PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1-incl-ex2-plot.eps |only
PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1-incl-ex2-plot.pdf |only
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PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1-incl-ex4-plot.pdf |only
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PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1.dvi |only
PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1.log |only
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PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1.tex |only
PwrGSD-1.15/PwrGSD/inst/doc/PwrGSD-manual.pdf |only
PwrGSD-1.15/PwrGSD/inst/doc/PwrGSD-vignette-1.tex |only
PwrGSD-1.15/PwrGSD/inst/doc/Rplots.ps |only
PwrGSD-1.15/PwrGSD/inst/doc/clearance.jpg |only
PwrGSD-1.15/PwrGSD/inst/doc/cpd-PwrGSD-vignette-1-fig1-LanDemets.eps |only
PwrGSD-1.15/PwrGSD/inst/doc/cpd-PwrGSD-vignette-1-fig1-LanDemets.pdf |only
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PwrGSD-1.15/PwrGSD/inst/doc/cpd-PwrGSD-vignette-1-fig2-StochCurt.pdf |only
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PwrGSD-1.15/PwrGSD/inst/doc/cpd-PwrGSD-vignette-1.tex |only
PwrGSD-1.15/PwrGSD/inst/misc |only
PwrGSD-1.15/PwrGSD/man/Ch2-cpd.PwrGSD.Rd |only
PwrGSD-1.15/PwrGSD/man/Ch3-Power.Rd |only
PwrGSD-1.15/PwrGSD/man/Ch4-Elements.Rd |only
PwrGSD-1.15/PwrGSD/man/Ch5-plot.cpd.PwrGSD.Rd |only
PwrGSD-1.15/PwrGSD/man/Ch6-GrpSeqBnds.Rd |only
PwrGSD-1.15/PwrGSD/man/Ch7-CondPower.Rd |only
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PwrGSD-1.15/PwrGSD/man/Ch9-as.boundaries.Rd |only
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PwrGSD-1.15/PwrGSD/man/ChD-agghaz.Rd |only
PwrGSD-1.15/PwrGSD/man/ChE-mystack.Rd |only
PwrGSD-1.15/PwrGSD/man/M1-CDFOR2LRR.Rd |only
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PwrGSD-1.15/PwrGSD/man/M3-CRRtoRR.Rd |only
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PwrGSD-1.15/PwrGSD/man/M5-RR2RCM.Rd |only
PwrGSD-1.15/PwrGSD/man/M6-lookup.Rd |only
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PwrGSD-1.15/PwrGSD/man/M8-DX.Rd |only
PwrGSD-1.15/PwrGSD/man/M9-pste.Rd |only
PwrGSD-1.15/PwrGSD/src/normdist.c |only
PwrGSD-1.16/PwrGSD/DESCRIPTION | 13
PwrGSD-1.16/PwrGSD/NAMESPACE | 8
PwrGSD-1.16/PwrGSD/R/PwrGSD.R | 2823 +++++-----
PwrGSD-1.16/PwrGSD/inst/doc/GrpSeqBnds-vignette-1-incl-ex1-plot.eps | 46
PwrGSD-1.16/PwrGSD/inst/doc/GrpSeqBnds-vignette-1-incl-ex1-plot.pdf | 118
PwrGSD-1.16/PwrGSD/inst/doc/GrpSeqBnds-vignette-1.Rnw | 14
PwrGSD-1.16/PwrGSD/inst/doc/GrpSeqBnds-vignette-1.pdf |binary
PwrGSD-1.16/PwrGSD/inst/doc/PwrGSD-vignette-1.Rnw | 4
PwrGSD-1.16/PwrGSD/inst/doc/PwrGSD-vignette-1.pdf |binary
PwrGSD-1.16/PwrGSD/inst/doc/cpd-PwrGSD-vignette-1.Rnw | 40
PwrGSD-1.16/PwrGSD/inst/doc/cpd-PwrGSD-vignette-1.pdf |binary
PwrGSD-1.16/PwrGSD/inst/doc/stats.txt |only
PwrGSD-1.16/PwrGSD/man/Ch1-PwrGSD.Rd | 71
PwrGSD-1.16/PwrGSD/man/Ch2-LanDemets.Rd |only
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PwrGSD-1.16/PwrGSD/man/ChA2-Elements.Rd |only
PwrGSD-1.16/PwrGSD/man/ChA3-plot.cpd.PwrGSD.Rd |only
PwrGSD-1.16/PwrGSD/man/ChA4-GrpSeqBnds.Rd |only
PwrGSD-1.16/PwrGSD/man/ChA5-CondPower.Rd |only
PwrGSD-1.16/PwrGSD/man/ChA6-SimGSB.Rd |only
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PwrGSD-1.16/PwrGSD/man/ChA8-IntSurvDiff.Rd |only
PwrGSD-1.16/PwrGSD/man/ChA9-agghaz.Rd |only
PwrGSD-1.16/PwrGSD/man/ChB1-mysurvfit.Rd |only
PwrGSD-1.16/PwrGSD/man/ChB2-mystack.Rd |only
PwrGSD-1.16/PwrGSD/man/ChB3-CDFOR2LRR.Rd |only
PwrGSD-1.16/PwrGSD/man/ChB4-CY2TOShaz.Rd |only
PwrGSD-1.16/PwrGSD/man/ChB5-CRRtoRR.Rd |only
PwrGSD-1.16/PwrGSD/man/ChB6-RCM2RR.Rd |only
PwrGSD-1.16/PwrGSD/man/ChB7-RR2RCM.Rd |only
PwrGSD-1.16/PwrGSD/man/ChB8-lookup.Rd |only
PwrGSD-1.16/PwrGSD/man/ChB9-lung.Rd |only
PwrGSD-1.16/PwrGSD/man/ChC1-DX.Rd |only
PwrGSD-1.16/PwrGSD/man/ChC2-pste.Rd |only
PwrGSD-1.16/PwrGSD/src/AsyPwrGSD.c | 60
PwrGSD-1.16/PwrGSD/src/SimPwrGSD.c | 14
PwrGSD-1.16/PwrGSD/src/StCu2Bnds.c | 10
PwrGSD-1.16/PwrGSD/src/drift.c | 9
PwrGSD-1.16/PwrGSD/src/grpseqbnds.c | 30
98 files changed, 1690 insertions(+), 1570 deletions(-)
Title: Basic functions for the TractoR (tractography with R) bundle
Diff between tractor.base versions 1.3.0 dated 2009-11-10 and 1.4.0 dated 2010-03-13
Description: The tractor.base package consists of functions for working
with magnetic resonance images. It can read and write image
files stored in Analyze, NIfTI and DICOM formats (DICOM support
is read only), generate images for use as regions of interest,
and manipulate and visualise images.
Author: Jon Clayden
Maintainer: Jon Clayden
DESCRIPTION | 8 -
R/dicom.R | 183 ++++++++++++++++++++++++++++++---------------
R/generate.R | 7 +
R/misc.R | 12 ++
R/mri_image.R | 29 +++++++
R/output.R | 5 -
R/png.R | 2
R/viz.R | 58 +++++++++++++-
data/dictionary.txt | 1
man/newMriImageWithData.Rd | 7 +
man/output.Rd | 2
man/visualisation.Rd | 6 +
12 files changed, 246 insertions(+), 74 deletions(-)
Title: Infrastructure for seriation
Diff between seriation versions 1.0-1 dated 2009-08-25 and 1.0-2 dated 2010-03-13
Description: Infrastructure for seriation with an implementation of
several seriation/sequencing techniques to reorder matrices,
dissimilarity matrices, and dendrograms. Also contains some
visualizations techniques based on seriation.
Author: Michael Hahsler, Christian Buchta and Kurt Hornik
Maintainer: Michael Hahsler
DESCRIPTION | 8 ++++----
NAMESPACE | 1 +
R/bertinplot.R | 15 +++++++--------
R/permute.R | 1 +
inst/doc/seriation.Rnw | 2 +-
inst/doc/seriation.pdf |binary
6 files changed, 14 insertions(+), 13 deletions(-)
Title: SAM: Significance Analysis of Microarrays
Diff between samr versions 1.27 dated 2010-01-04 and 1.28 dated 2010-03-13
Description: Significance Analysis of Microarrays
Author: R. Tibshirani, G. Chu, T. Hastie, Balasubramanian Narasimhan
Maintainer: Rob Tibshirani
DESCRIPTION | 6 +++---
R/samr.morefuns.R | 3 +++
2 files changed, 6 insertions(+), 3 deletions(-)
Title: Solve systems of non linear equations
Diff between nleqslv versions 1.5 dated 2009-09-05 and 1.6 dated 2010-03-13
Description: Solve a system of non linear equations using a Broyden or
a Newton method with a choice of global strategies such as
linesearch and trust region. There are options for using a
numerical or an analytical jacobian and fixed or automatic
scaling of parameters.
Author: Berend Hasselman
Maintainer: Berend Hasselman
nleqslv-1.5/nleqslv/src/liqrev.f |only
nleqslv-1.5/nleqslv/src/liqrup.f |only
nleqslv-1.5/nleqslv/src/lixtra.f |only
nleqslv-1.5/nleqslv/src/nuvlib.f |only
nleqslv-1.5/nleqslv/src/nwout.f |only
nleqslv-1.5/nleqslv/src/nwoutx.c |only
nleqslv-1.6/nleqslv/DESCRIPTION | 8 -
nleqslv-1.6/nleqslv/NEWS | 6
nleqslv-1.6/nleqslv/man/nleqslv.Rd | 2
nleqslv-1.6/nleqslv/src/lautil.f |only
nleqslv-1.6/nleqslv/src/nwbrdn.f | 219 ++++++++++++++---------------
nleqslv-1.6/nleqslv/src/nwddlg.f | 100 ++++++-------
nleqslv-1.6/nleqslv/src/nwglsh.f | 58 +++----
nleqslv-1.6/nleqslv/src/nwnleq.f | 10 -
nleqslv-1.6/nleqslv/src/nwnwtn.f | 132 ++++++++---------
nleqslv-1.6/nleqslv/src/nwout.c |only
nleqslv-1.6/nleqslv/src/nwpdlg.f | 93 ++++++------
nleqslv-1.6/nleqslv/src/nwqlsh.f | 68 ++++-----
nleqslv-1.6/nleqslv/src/nwutil.f | 121 ++++++++++------
nleqslv-1.6/nleqslv/tests/brdban.Rout.save | 16 +-
nleqslv-1.6/nleqslv/tests/chquad.Rout.save | 36 ++--
nleqslv-1.6/nleqslv/tests/dslnex.Rout.save | 4
22 files changed, 451 insertions(+), 422 deletions(-)
Title: Resampling-based multiple hypothesis testing
Diff between multtest versions 2.2.0 dated 2009-11-13 and 2.3.2 dated 2010-03-13
Description: Non-parametric bootstrap and permutation resampling-based
multiple testing procedures (including empirical Bayes methods)
for controlling the family-wise error rate (FWER), generalized
family-wise error rate (gFWER), tail probability of the
proportion of false positives (TPPFP), and false discovery rate
(FDR). Several choices of bootstrap-based null distribution
are implemented (centered, centered and scaled,
quantile-transformed). Single-step and step-wise methods are
available. Tests based on a variety of t- and F-statistics
(including t-statistics based on regression parameters from
linear and survival models as well as those based on
correlation parameters) are included. When probing hypotheses
with t-statistics, users may also select a potentially faster
null distribution which is multivariate normal with mean zero
and variance covariance matrix derived from the vector
influence function. Results are reported in terms of adjusted
p-values, confidence regions and test statistic cutoffs. The
procedures are directly applicable to identifying
differentially expressed genes in DNA microarray experiments.
Author: Katherine S. Pollard, Houston N. Gilbert, Yongchao Ge, Sandra
Taylor, Sandrine Dudoit
Maintainer: Katherine S. Pollard
DESCRIPTION | 6 +++---
src/Rpack.c | 9 +++++----
src/pairt_sampling_fixed.c | 2 +-
3 files changed, 9 insertions(+), 8 deletions(-)
Title: Group Sequential Design
Diff between gsDesign versions 2.0-5 dated 2009-07-01 and 2.2-11 dated 2010-03-13
Description: gsDesign is a package that derives group sequential
designs and describes their properties.
Author: Keaven Anderson
Maintainer: Keaven Anderson
DESCRIPTION | 9
NAMESPACE | 10
R/gsBinomial.R | 6
R/gsBinomialExact.R |only
R/gsCP.R | 33
R/gsDesign.R | 112
R/gsMethods.R | 469 -
R/gsNormalGrid.R | 6
R/gsSpending.R | 136
R/gsSurvival.R | 55
R/gsqplot.R |only
R/nEvents.R |only
inst/NewTests |only
inst/doc/gsDesignManual.pdf | 9632 ++++++++++++++++++------------------
man/binomial.Rd | 5
man/gsBinomialExact.Rd |only
man/gsCP.Rd | 97
man/gsDensity.Rd |only
man/gsDesign.Rd | 17
man/nSurvival.Rd | 111
man/normalGrid.Rd | 28
man/plot.gsDesign.Rd | 7
man/sfLinear.Rd |only
man/sfTDist.Rd | 2
man/sflogistic.Rd | 2
man/sfpoints.Rd | 1
src/gsdensity.c |only
tex/Sections/sfPoints.tex | 49
tex/Sections/spendfn.tex | 12
tex/figs/sfLinear.pdf |only
tex/tmphelp/Rd/gsBinomialExact.tex |only
tex/tmphelp/Rd/sfLinear.tex |only
tex/tmphelp/Rd/sfTDist.tex | 2
tex/tmphelp/Rd/sflogistic.tex | 2
tex/tmphelp/Rd/sfpoints.tex | 1
tex/tmphelp/tex/gsBinomialExact.tex |only
tex/tmphelp/tex/sfLinear.tex |only
37 files changed, 5655 insertions(+), 5149 deletions(-)
Title: Co-correspondence analysis methods
Diff between cocorresp versions 0.1-7 dated 2008-10-23 and 0.1-9 dated 2010-03-13
Description: Fits predictive and symmetric co-correspondence analysis
(CoCA) models to relate one data matrix to another data matrix.
More specifically, CoCA maximises the weighted covariance
between the weighted averaged species scores of one community
and the weighted averaged species scores of another community.
CoCA attempts to find patterns that are common to both
communitities.
Author: Original Matlab routines by C.J.F. ter Braak and A.P.
Schaffers. R port by Gavin L. Simpson. Function simpls based on
simpls.fit (package pls) by Ron Wehrens and Bjorn-Helge Mevik.
Maintainer: Gavin L. Simpson
DESCRIPTION | 10 +++++-----
inst/CITATION | 11 +++++------
inst/ChangeLog | 11 +++++++++--
3 files changed, 19 insertions(+), 13 deletions(-)
Title: Tests/Searches for significant clusters in genetic data.
Diff between bayesclust versions 2.1 dated 2009-03-01 and 3.0 dated 2010-03-13
Description: Bayes Clustering Package
Author: Gopal, V. and Fuentes, C. and Casella, G.
Maintainer: Gopal, V.
bayesclust-2.1/bayesclust/R/fdr.test.R |only
bayesclust-2.1/bayesclust/man/fdr.test.Rd |only
bayesclust-3.0/bayesclust/DESCRIPTION | 8
bayesclust-3.0/bayesclust/NAMESPACE | 10
bayesclust-3.0/bayesclust/R/cluster.optimal.R | 6
bayesclust-3.0/bayesclust/R/cluster.test.R | 135 +++++-----
bayesclust-3.0/bayesclust/R/combine.R |only
bayesclust-3.0/bayesclust/R/emp2pval.R | 26 -
bayesclust-3.0/bayesclust/R/emp2pval.cluster.test.R |only
bayesclust-3.0/bayesclust/R/emp2pval.cluster.test.reps.R |only
bayesclust-3.0/bayesclust/R/nulldensity.R | 6
bayesclust-3.0/bayesclust/R/plot.cluster.optimal.R | 73 ++---
bayesclust-3.0/bayesclust/R/plot.cluster.test.R | 2
bayesclust-3.0/bayesclust/R/plot.cluster.test.reps.R |only
bayesclust-3.0/bayesclust/R/print.summary.cluster.test.R | 2
bayesclust-3.0/bayesclust/R/print.summary.cluster.test.reps.R |only
bayesclust-3.0/bayesclust/R/summary.cluster.test.reps.R |only
bayesclust-3.0/bayesclust/data/egDataset1.rda |only
bayesclust-3.0/bayesclust/man/bayesclust-package.Rd | 14 -
bayesclust-3.0/bayesclust/man/cluster.optimal.Rd | 15 -
bayesclust-3.0/bayesclust/man/cluster.test.Rd | 32 +-
bayesclust-3.0/bayesclust/man/combine.Rd |only
bayesclust-3.0/bayesclust/man/cutoffs.Rd | 7
bayesclust-3.0/bayesclust/man/egDataset1.Rd |only
bayesclust-3.0/bayesclust/man/emp2pval.Rd | 53 ++-
bayesclust-3.0/bayesclust/man/hist.nulldensity.Rd | 7
bayesclust-3.0/bayesclust/man/nulldensity.Rd | 11
bayesclust-3.0/bayesclust/man/plot.cluster.optimal.Rd | 34 +-
bayesclust-3.0/bayesclust/man/plot.cluster.test.Rd | 26 +
bayesclust-3.0/bayesclust/man/summary.cluster.test.Rd | 23 -
30 files changed, 244 insertions(+), 246 deletions(-)
Title: Analogue and weighted averaging methods for palaeoecology
Diff between analogue versions 0.6-22 dated 2009-11-05 and 0.6-23 dated 2010-03-13
Description: Fits Modern Analogue Technique and Weighted Averaging
transfer function models for prediction of environmental data
from species data, and related methods used in palaeoecology.
Author: Gavin L. Simpson, Jari Oksanen
Maintainer: Gavin L. Simpson
DESCRIPTION | 10 +++++-----
R/fixUpTol.R | 3 +--
R/minDC.R | 2 +-
R/plot.bayesF.R | 3 ++-
R/plot.roc.R | 33 +++++++++++++++++++--------------
R/roc.R | 3 ++-
R/tran.R | 2 +-
R/wa.R | 19 ++++++++++---------
R/wa.formula.R | 4 +++-
inst/ChangeLog | 32 ++++++++++++++++++++++++++++++++
man/bayesF.Rd | 4 +++-
man/plot.roc.Rd | 12 +++++++++++-
12 files changed, 90 insertions(+), 37 deletions(-)
Title: Teaching GUI - prototype
Diff between TGUITeaching versions 0.9.5 dated 2010-03-12 and 0.9.6 dated 2010-03-13
Description: Trainings-GUI
Author: Matthias Templ, Gerlinde Dinges, Alexander Kowarik, Bernhard
Meindl
Maintainer: Bernhard Meindl
DESCRIPTION | 6 +++---
man/ex_praesident.Rd | 13 ++++++++++++-
2 files changed, 15 insertions(+), 4 deletions(-)
Title: General Non-linear Optimization
Diff between Rsolnp versions 1.0 dated 2010-03-05 and 1.0-2 dated 2010-03-13
Description: General Non-linear Optimization Using Augmented Lagrange
Multiplier Method
Author: Alexios Ghalanos and Stefan Theussl
Maintainer: Alexios Ghalanos
ChangeLog | 11 +++++++++++
DESCRIPTION | 10 +++++-----
R/helpers.R | 12 ++++++------
inst/CITATION |only
man/Rsolnp-package.Rd | 2 +-
5 files changed, 23 insertions(+), 12 deletions(-)
Title: Rcpp R/C++ interface package
Diff between Rcpp versions 0.7.8 dated 2010-03-09 and 0.7.9 dated 2010-03-13
Description: Seamless R and C++ integration The Rcpp package contains a
C++ library that facilitates the integration of R and C++ in
various ways.
R data types (SEXP) are matched to C++ objects in a class hierarchy.
All R types are supported (vectors, functions, environment, etc
...) and each type is mapped to a dedicated class. For
example, numeric vectors are represented as instances of the
Rcpp::NumericVector class, environments are represented as
instances of Rcpp::Environment, functions are represented as
Rcpp::Function, etc ...
The underlying C++ library also offers the Rcpp::wrap function which is
a templated function that transforms an arbitrary object into a
SEXP. This makes it straightforward to implement C++ logic in
terms of standard C++ types such as STL containers and then
wrap them when they need to be returned to R. Internally, wrap
uses advanced template meta programming techniques and
currently supports : primitive types (bool, int, double,
size_t, Rbyte, Rcomplex, std::string), STL containers (e.g
std::vector
Author: Dirk Eddelbuettel and Romain Francois, with contributions by
Simon Urbanek and David Reiss; based on code written during
2005 and 2006 by Dominick Samperi
Maintainer: Dirk Eddelbuettel and Romain Francois
Rcpp-0.7.8/Rcpp/src/Rcpp/internal/convertible.h |only
Rcpp-0.7.9/Rcpp/DESCRIPTION | 8
Rcpp-0.7.9/Rcpp/NEWS | 12
Rcpp-0.7.9/Rcpp/R/RcppLdpath.R | 12
Rcpp-0.7.9/Rcpp/inst/ChangeLog | 32
Rcpp-0.7.9/Rcpp/inst/doc/Rcpp-introduction.Rnw | 16
Rcpp-0.7.9/Rcpp/inst/doc/Rcpp-introduction.pdf | 498 +++++-----
Rcpp-0.7.9/Rcpp/inst/doc/Rcpp-unitTests.pdf |binary
Rcpp-0.7.9/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.html | 6
Rcpp-0.7.9/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.txt | 492 ++++-----
Rcpp-0.7.9/Rcpp/inst/examples/FastLM/benchmark.r | 10
Rcpp-0.7.9/Rcpp/inst/unitTests/runit.environments.R | 2
Rcpp-0.7.9/Rcpp/src/Rcpp/internal/wrap.h | 2
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Rcpp-0.7.9/Rcpp/src/Rcpp/traits/r_sexptype_traits.h | 2
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Rcpp-0.7.9/Rcpp/src/Rcpp/traits/wrap_type_traits.h | 2
Rcpp-0.7.9/Rcpp/src/RcppCommon.h | 3
19 files changed, 581 insertions(+), 522 deletions(-)
More information about RcmdrPlugin.MAd at CRAN
Permanent link
Title: Meta-Analysis with Correlations (MAc) Rcmdr Plug-in
Diff between RcmdrPlugin.MAc versions 1.0.5 dated 2010-03-01 and 1.0.6 dated 2010-03-13
More information about RcmdrPlugin.MAc at CRAN
Description: This is an R-Commander plug-in for the MAc package
(Meta-Analysis with Correlations). This package enables the
user to conduct a meta-analysis in a menu-driven, graphical
user interface environment (e.g., SPSS), while having the full
statistical capabilities of R and the MAc package. The MAc
package itself contains a variety of useful functions for
conducting a research synthesis with correlational data. One of
the unique features of the MAc package is in its integration of
user-friendly functions to complete the majority of statistical
steps involved in a meta-analysis with correlations. It uses
recommended procedures as described in The Handbook of Research
Synthesis and Meta-Analysis (Cooper, Hedges, & Valentine,
2009).
Author: AC Del Re
Maintainer: AC Del Re
RcmdrPlugin.MAc-1.0.5/RcmdrPlugin.MAc/.Rd2dvi5756 |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/DESCRIPTION | 14
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/R/RcmdrPlugin.R | 1222 +++++++++-
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/inst/etc/menus.txt | 71
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/PubBiascmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/RcmdrPlugin.MAc-package.Rd | 16
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/Wifuncmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/ancova_to_d1cmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/ancova_to_d2cmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/d_to_gcmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/f.ancova_to_dcmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/f_to_dcmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/lor_to_dcmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/mean_to_d2cmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/mean_to_dcmd.Rd |only
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RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/p_to_d2cmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/prop_to_dcmd.Rd |only
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RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/r_to_dcmd.Rd |only
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RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/tt.ancova_to_dcmd.Rd |only
24 files changed, 1243 insertions(+), 80 deletions(-)
Permanent link
Title: Automating Mplus Model Estimation and Interpretation
Diff between MplusAutomation versions 0.2-2 dated 2010-03-11 and 0.2-3 dated 2010-03-13
More information about MplusAutomation at CRAN
Description: The MplusAutomation package leverages the flexibility of
the R language to automate latent variable model estimation and
interpretation using Mplus, a powerful latent variable modeling
program developed by Muthen and Muthen (www.statmodel.com).
Specifically, MplusAutomation provides routines for creating
related groups of models, running batches of models, and
extracting and tabulating model parameters and fit statistics.
Author: Michael Hallquist
Maintainer: Michael Hallquist
DESCRIPTION | 10 ++--
NAMESPACE | 5 +-
R/parseOutput.R | 84 +++++++++++++++++++++++++++++++++++++++++
man/HTMLSummaryTable.Rd |only
man/LatexSummaryTable.Rd |only
man/MplusAutomation-package.Rd | 8 ++-
man/createTable.Rd | 9 ++++
man/showSummaryTable.Rd |only
8 files changed, 107 insertions(+), 9 deletions(-)
Permanent link
Title: Meta-Analysis with Mean Differences
Diff between MAd versions 0.1 dated 2010-03-07 and 0.2 dated 2010-03-13
Description: This is an integrated meta-analysis package for conducting
a research synthesis with mean differences data. One of the
unique features of this package is in its integration of
user-friendly functions to complete most of the statistical
steps involved in a meta-analysis with mean differences. It
uses recommended procedures as described in The Handbook of
Research Synthesis and Meta-Analysis (Cooper, Hedges, &
Valentine, 2009).
Author: AC Del Re & William T. Hoyt
Maintainer: AC Del Re
DESCRIPTION | 20 +++++++++----------
R/MAd.R | 52 ++++++++++++++++++++++++++++++++++++++++----------
man/CatComp.Rd | 10 ++++-----
man/CatMod.Rd | 4 +--
man/CatModGraph.Rd | 6 ++---
man/ComplData.Rd | 6 ++---
man/CorAtten.rd | 6 ++---
man/ForestPlot.Rd | 4 +--
man/FunnelPlot.Rd | 4 +--
man/Kappa.Rd | 6 ++---
man/MAd-package.Rd | 25 ++++++++++++++----------
man/MAreg1.Rd | 4 +--
man/MAreg2.Rd | 6 ++---
man/MAregGraph.Rd | 6 ++---
man/MeanDiff.Rd | 28 +++++++++++++++++---------
man/MeanDiffd.Rd | 29 ++++++++++++++++-----------
man/MeanDiffg.Rd | 17 +++++++++-------
man/MetaG.Rd | 6 +----
man/MultiModGraph.Rd | 10 +++++++--
man/OmnibusES.Rd | 6 +++--
man/PubBias.Rd | 2 -
man/Wifun.Rd | 2 -
man/ancova_to_d1.Rd | 2 -
man/d_to_g.Rd | 32 +++++++-----------------------
man/f.ancova_to_d.Rd | 19 +++++++++---------
man/f_to_d.Rd | 7 +++---
man/fail_to_d.Rd |only
man/lor_to_d.Rd | 7 +++---
man/mean_to_d.Rd | 7 ++----
man/mean_to_d2.Rd | 5 +---
man/or_to_d.Rd |only
man/p.ancova_to_d1.Rd | 7 ++----
man/p.ancova_to_d2.Rd | 7 ++----
man/p_to_d1.Rd | 7 ++----
man/p_to_d2.Rd | 7 ++----
man/prop_to_d.Rd | 7 ++----
man/prop_to_or.Rd | 7 ++----
man/r_from_chi.Rd | 9 +++-----
man/r_from_d.Rd | 7 ++----
man/r_from_d1.Rd | 7 ++----
man/r_from_t.Rd | 1
man/r_to_d.Rd | 3 --
man/t_to_d.Rd | 7 ++----
man/tt.ancova_to_d.Rd | 1
44 files changed, 223 insertions(+), 192 deletions(-)
Title: Meta-Analysis with Correlations
Diff between MAc versions 1.0.5 dated 2010-03-01 and 1.0.6 dated 2010-03-13
Description: This is an integrated meta-analysis package for conducting
a research synthesis with correlational data. One of the unique
features of this package is in its integration of user-friendly
functions to complete the majority of statistical steps
involved in a meta-analysis with correlations. It uses
recommended procedures as described in The Handbook of Research
Synthesis and Meta-Analysis (Cooper, Hedges, & Valentine,
2009).
Author: AC Del Re & William T. Hoyt
Maintainer: AC Del Re
DESCRIPTION | 17 -
R/MAc.R | 455 ++++++++++++++++++++++++++++++++++++++++----------
man/ComplData.Rd | 2
man/MAc-package.Rd | 25 +-
man/PubBias.Rd |only
man/ancova_to_d1.Rd |only
man/ancova_to_d2.Rd |only
man/d_to_g.Rd |only
man/f.ancova_to_d.Rd |only
man/f_to_d.Rd |only
man/fail_to_d.Rd |only
man/lor_to_d.Rd |only
man/mean_to_d.Rd |only
man/mean_to_d2.Rd |only
man/or_to_d.Rd |only
man/p.ancova_to_d1.Rd |only
man/p.ancova_to_d2.Rd |only
man/p_to_d1.Rd |only
man/p_to_d2.Rd |only
man/prop_to_d.Rd |only
man/prop_to_or.Rd |only
man/r_to_d.Rd |only
man/t_to_d.Rd |only
man/tt.ancova_to_d.Rd |only
24 files changed, 390 insertions(+), 109 deletions(-)
Title: Algorithmic Experimental Design
Diff between AlgDesign versions 1.1-1 dated 2010-01-25 and 1.1-2 dated 2010-03-13
Description: Algorithmic experimental designs. Calculates exact and
approximate theory experimental designs for D,A, and I
criteria. Very large designs may be created. Experimental
designs may be blocked or blocked designs created from a
candidate list, using several criteria. The blocking can be
done when whole and within plot factors interact.
Author: Bob Wheeler
Maintainer: Bob Wheeler
DESCRIPTION | 8 ++++----
inst/doc/AlgDesign.pdf |binary
2 files changed, 4 insertions(+), 4 deletions(-)