Title: Functions to use vegetation databases (Turboveg) for vegetation
analyses in R
Diff between vegdata versions 0.2 dated 2010-10-15 and 0.2.1 dated 2010-11-28
Description: Handling of vegetation data sets from Turboveg Databases.
Taxonomic evaluation for databases with German taxonomical
standard list.
Author: Florian Jansen
Maintainer: Florian Jansen
vegdata-0.2.1/vegdata/DESCRIPTION | 8 +-
vegdata-0.2.1/vegdata/R/syntab.r | 37 ++++++------
vegdata-0.2.1/vegdata/R/tax.r | 4 -
vegdata-0.2.1/vegdata/R/tv.biblio.r | 2
vegdata-0.2.1/vegdata/R/tv.coverperc.r | 32 +++++-----
vegdata-0.2.1/vegdata/R/tv.obs.r | 16 ++---
vegdata-0.2.1/vegdata/R/tv.site.r | 86 ++++++++++++++++-------------
vegdata-0.2.1/vegdata/R/tv.taxval-old.r |only
vegdata-0.2.1/vegdata/R/tv.taxval.r | 2
vegdata-0.2.1/vegdata/R/tv.veg.r | 61 +++++++++++---------
vegdata-0.2.1/vegdata/data/lc.all.csv |only
vegdata-0.2.1/vegdata/inst/CITATION | 9 +--
vegdata-0.2.1/vegdata/inst/ChangeLog | 5 +
vegdata-0.2.1/vegdata/inst/doc/.cache |only
vegdata-0.2.1/vegdata/inst/doc/vegdata.bib | 60 +++++++-------------
vegdata-0.2.1/vegdata/inst/doc/vegdata.pdf |binary
vegdata-0.2.1/vegdata/inst/doc/vegdata.rnw | 84 ++++++++++++++--------------
vegdata-0.2.1/vegdata/man/lc.rd | 16 +++++
vegdata-0.2.1/vegdata/man/syntab.rd | 10 ++-
vegdata-0.2.1/vegdata/man/tv.site.rd | 3 -
vegdata-0.2.1/vegdata/man/tv.veg.rd | 6 +-
vegdata-0.2/vegdata/inst/doc/ecol_let.bst |only
22 files changed, 236 insertions(+), 205 deletions(-)
Title: Analyzing survival data
Diff between p3state.msm versions 1.1 dated 2010-01-14 and 1.2 dated 2010-11-28
Description: Analyzing survival data from illness-death model
Author: Luis Meira-Machado and Javier Roca-Pardinas
Maintainer: Luis Felipe Meira-Machado
DESCRIPTION | 6 ++---
R/plot.p3state.R | 56 +++++++++++++++++++++++++++++++---------------------
inst |only
man/p3state.Rd | 6 ++++-
man/plot.p3state.Rd | 5 ++--
5 files changed, 45 insertions(+), 28 deletions(-)
Title: Algorithms for Quantitative Pedology
Diff between aqp versions 0.97 dated 2010-09-24 and 0.98-3 dated 2010-11-28
Description: A collection of algorithms related to modeling of soil
resources, soil classification, soil profile aggregation, and
visualization.
Author: Dylan Beaudette
Maintainer: Dylan Beaudette
DESCRIPTION | 12 +--
NEWS | 20 +++++
R/class_defs.R | 4 -
R/make.segments.R | 1
R/panel.depth_function.R | 2
R/profile_compare.R | 49 ++++----------
R/profile_plot.R | 14 ++--
R/soil_slotting.R | 156 ++++++++++++++++------------------------------
TODO | 3
demo |only
man/f.noise.Rd | 31 ++++-----
man/profile_compare.Rd | 6 -
man/profile_plot.Rd | 12 ++-
man/resample.twotheta.Rd | 6 +
man/soil.slot.Rd | 69 +++++++++++++++-----
man/soil.slot.multiple.Rd | 2
man/sp3.Rd | 5 -
17 files changed, 203 insertions(+), 189 deletions(-)
Title: Seamless R and C++ Integration
Diff between Rcpp versions 0.8.8 dated 2010-11-03 and 0.8.9 dated 2010-11-28
Description: The Rcpp package provides a C++ library which facilitates
the integration of R and C++.
R data types (SEXP) are matched to C++ objects in a class hierarchy.
All R types are supported (vectors, functions, environment, etc
...) and each type is mapped to a dedicated class. For
example, numeric vectors are represented as instances of the
Rcpp::NumericVector class, environments are represented as
instances of Rcpp::Environment, functions are represented as
Rcpp::Function, etc ... The "Rcpp-introduction" vignette
provides a good entry point to Rcpp.
Conversion from C++ to R and back is driven by the templates Rcpp::wrap
and Rcpp::as which are highly flexible and extensible, as
documented in the "Rcpp-extending" vignette.
Rcpp also provides Rcpp modules, a framework that allows exposing C++
functions and classes to the R level. The "Rcpp-modules"
vignette details the current set of features of Rcpp-modules.
Rcpp includes a concept called Rcpp sugar that brings many R functions
into C++. Sugar takes advantage of lazy evaluation and
expression templates to achieve great performance while
exposing a syntax that is much nicer to use than the equivalent
low-level loop code. The "Rcpp-sugar" vignette gives an
overview of the feature.
Several examples are included, and 793 unit tests in 375 unit test
functions provide additional usage examples.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by
Douglas Bates, John Chambers, Simon Urbanek, and David Reiss; a
small portion of the code is based on code written during 2005
and 2006 by Dominick Samperi
Maintainer: Dirk Eddelbuettel and Romain Francois
Rcpp-0.8.8/Rcpp/inst/include/Rcpp/module/Module_generated_make_function.h |only
Rcpp-0.8.8/Rcpp/man/CppMethod-class.Rd |only
Rcpp-0.8.9/Rcpp/ChangeLog | 200
Rcpp-0.8.9/Rcpp/DESCRIPTION | 15
Rcpp-0.8.9/Rcpp/NAMESPACE | 21
Rcpp-0.8.9/Rcpp/R/00_classes.R | 81
Rcpp-0.8.9/Rcpp/R/01_show.R | 59
Rcpp-0.8.9/Rcpp/R/03_prompt.R | 5
Rcpp-0.8.9/Rcpp/R/Module.R | 137
Rcpp-0.8.9/Rcpp/R/Rcpp.package.skeleton.R | 7
Rcpp-0.8.9/Rcpp/R/exceptions.R | 2
Rcpp-0.8.9/Rcpp/R/populate.R |only
Rcpp-0.8.9/Rcpp/R/zzz.R | 3
Rcpp-0.8.9/Rcpp/TODO | 9
Rcpp-0.8.9/Rcpp/inst/NEWS | 45
Rcpp-0.8.9/Rcpp/inst/doc/Makefile | 34
Rcpp-0.8.9/Rcpp/inst/doc/Rcpp-FAQ.pdf |binary
Rcpp-0.8.9/Rcpp/inst/doc/Rcpp-extending.pdf |binary
Rcpp-0.8.9/Rcpp/inst/doc/Rcpp-introduction.Rnw | 4
Rcpp-0.8.9/Rcpp/inst/doc/Rcpp-introduction.pdf |binary
Rcpp-0.8.9/Rcpp/inst/doc/Rcpp-modules.pdf |binary
Rcpp-0.8.9/Rcpp/inst/doc/Rcpp-modules/Rcpp-modules.Rnw | 1042 +-
Rcpp-0.8.9/Rcpp/inst/doc/Rcpp-package.pdf |binary
Rcpp-0.8.9/Rcpp/inst/doc/Rcpp-package/Rcpp-package.Rnw | 8
Rcpp-0.8.9/Rcpp/inst/doc/Rcpp-quickref.pdf |binary
Rcpp-0.8.9/Rcpp/inst/doc/Rcpp-sugar.pdf |binary
Rcpp-0.8.9/Rcpp/inst/doc/Rcpp-unitTests.pdf |binary
Rcpp-0.8.9/Rcpp/inst/doc/Rcpp.bib | 11
Rcpp-0.8.9/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.html | 10
Rcpp-0.8.9/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.txt | 42
Rcpp-0.8.9/Rcpp/inst/doc/unitTests/Rcpp-unitTests.R | 9
Rcpp-0.8.9/Rcpp/inst/include/Rcpp.h | 4
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/Module.h | 388
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/Named.h | 12
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/cache.h | 4
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/config.h | 5
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/macros |only
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/module/Module_Add_Property.h | 36
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/module/Module_Field.h | 16
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/module/Module_Property.h | 54
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/module/Module_generated_Constructor.h |only
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/module/Module_generated_CppFunction.h | 4354 ++++++++--
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/module/Module_generated_CppMethod.h | 989 +-
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/module/Module_generated_Pointer_CppMethod.h | 397
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/module/Module_generated_Pointer_method.h | 264
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/module/Module_generated_class_constructor.h |only
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/module/Module_generated_class_signature.h |only
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/module/Module_generated_ctor_signature.h |only
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/module/Module_generated_function.h | 792 +
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/module/Module_generated_get_return_type.h |only
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/module/Module_generated_get_signature.h |only
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/module/Module_generated_method.h | 1056 +-
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/routines.h | 5
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/stats/lnorm.h | 2
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/sugar/block/SugarMath.h | 2
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/sugar/matrix/as_vector.h |only
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/sugar/matrix/matrix_functions.h | 1
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/sugar/operators/minus.h | 4
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/traits/is_na.h | 2
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/traits/named_object.h | 3
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/vector/Matrix.h | 94
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/vector/MatrixColumn.h | 33
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/vector/MatrixRow.h | 32
Rcpp-0.8.9/Rcpp/inst/include/Rcpp/vector/Vector.h | 51
Rcpp-0.8.9/Rcpp/inst/include/RcppCommon.h | 2
Rcpp-0.8.9/Rcpp/inst/skeleton/Makevars | 2
Rcpp-0.8.9/Rcpp/inst/skeleton/rcpp_module.cpp | 26
Rcpp-0.8.9/Rcpp/inst/unitTests/RcppTestA/src/Makevars | 2
Rcpp-0.8.9/Rcpp/inst/unitTests/runit.Matrix.R | 4
Rcpp-0.8.9/Rcpp/inst/unitTests/runit.Module.R | 12
Rcpp-0.8.9/Rcpp/inst/unitTests/runit.client.package.R | 17
Rcpp-0.8.9/Rcpp/inst/unitTests/runit.modref.R | 3
Rcpp-0.8.9/Rcpp/inst/unitTests/runit.sugar.R | 25
Rcpp-0.8.9/Rcpp/inst/unitTests/testRcppModule/DESCRIPTION | 1
Rcpp-0.8.9/Rcpp/inst/unitTests/testRcppModule/src/Makevars | 2
Rcpp-0.8.9/Rcpp/inst/unitTests/testRcppModule/src/Num.cpp | 2
Rcpp-0.8.9/Rcpp/inst/unitTests/testRcppModule/src/rcpp_module.cpp | 3
Rcpp-0.8.9/Rcpp/inst/unitTests/testRcppModule/src/stdVector.cpp | 5
Rcpp-0.8.9/Rcpp/man/CppClass-class.Rd | 4
Rcpp-0.8.9/Rcpp/man/CppClassRepresentation-class.Rd | 1
Rcpp-0.8.9/Rcpp/man/CppConstructor-class.Rd |only
Rcpp-0.8.9/Rcpp/man/CppFunction-class.Rd | 2
Rcpp-0.8.9/Rcpp/man/CppOverloadedMethods-class.Rd |only
Rcpp-0.8.9/Rcpp/man/formals.Rd |only
Rcpp-0.8.9/Rcpp/man/populate.Rd |only
Rcpp-0.8.9/Rcpp/src/Evaluator.cpp | 9
Rcpp-0.8.9/Rcpp/src/Module.cpp | 109
Rcpp-0.8.9/Rcpp/src/RcppCommon.cpp | 4
Rcpp-0.8.9/Rcpp/src/Rcpp_init.c | 5
Rcpp-0.8.9/Rcpp/src/cache.cpp | 13
90 files changed, 8320 insertions(+), 2277 deletions(-)