Tue, 30 Nov 2010

Package xpose4specific updated to version 4.3.2 with previous version 4.3.0 dated 2010-10-23

Title: Xpose 4 Specific Functions Package
Description: Xpose is collection of packages to be used as a model building aid for non-linear mixed effects (population) analysis using NONMEM. It facilitates data set checkout, exploration and visualization, model diagnostics, candidate covariate identification and model comparison. Xpose4specific is a package containing specific plotting functions, which require relatively little user input, but are less customizable than the plot commands found in xpose4generic.
Author: E. Niclas Jonsson , Andrew Hooker and Mats Karlsson
Maintainer: Andrew Hooker

Diff between xpose4specific versions 4.3.0 dated 2010-10-23 and 4.3.2 dated 2010-11-30

 DESCRIPTION                |   10 +++++-----
 R/add.model.comp.R         |    9 ++++-----
 R/add.model.comp.cwres.R   |   10 +++++-----
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 R/ind.plots.R              |    2 +-
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 16 files changed, 50 insertions(+), 35 deletions(-)

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Package xpose4generic updated to version 4.3.2 with previous version 4.3.0 dated 2010-10-23

Title: Xpose 4 Generic Functions Package
Description: Xpose is collection of packages to be used as a model building aid for non-linear mixed effects (population) analysis using NONMEM. It facilitates data set checkout, exploration and visualization, model diagnostics, candidate covariate identification and model comparison. xpose4generic is a package containing generic functions for plotting, as well as class definitions. Highly customizeable, but requires more user input that xpose4specific.
Author: E. Niclas Jonsson , Andrew Hooker and Mats Karlsson
Maintainer: Andrew Hooker

Diff between xpose4generic versions 4.3.0 dated 2010-10-23 and 4.3.2 dated 2010-11-30

 DESCRIPTION            |   10 +++++-----
 R/xpose.create.title.R |    3 +--
 inst/changelog.txt     |    5 +++++
 inst/readme.txt        |    2 +-
 4 files changed, 12 insertions(+), 8 deletions(-)

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Package xpose4data updated to version 4.3.2 with previous version 4.3.0 dated 2010-10-23

Title: Xpose 4 Data Functions Package
Description: Xpose is collection of packages to be used as a model building aid for non-linear mixed effects (population) analysis using NONMEM. It facilitates data set checkout, exploration and visualization, model diagnostics, candidate covariate identification and model comparison. xpose4data is a package containing functions for reading in data from NONMEM, support functions, as well as class definitions.
Author: E. Niclas Jonsson , Andrew Hooker and Mats Karlsson
Maintainer: Andrew Hooker

Diff between xpose4data versions 4.3.0 dated 2010-10-23 and 4.3.2 dated 2010-11-30

 DESCRIPTION           |    8 ++++----
 R/read.phi.R          |    3 ++-
 R/xpose.data.R        |    1 +
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 6 files changed, 16 insertions(+), 7 deletions(-)

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Package xpose4classic updated to version 4.3.2 with previous version 4.3.0 dated 2010-10-23

Title: Xpose 4 Classic Menu System
Description: Xpose is collection of packages to be used as a model building aid for non-linear mixed effects (population) analysis using NONMEM. It facilitates data set checkout, exploration and visualization, model diagnostics, candidate covariate identification and model comparison. xpose4classic is a package containing functions for runing the classic menu system in Xpose.
Author: E. Niclas Jonsson , Andrew Hooker and Mats Karlsson
Maintainer: Andrew Hooker

Diff between xpose4classic versions 4.3.0 dated 2010-10-23 and 4.3.2 dated 2010-11-30

 DESCRIPTION        |   10 +++++-----
 R/xpose4.R         |    2 +-
 inst/changelog.txt |    5 +++++
 inst/readme.txt    |    2 +-
 4 files changed, 12 insertions(+), 7 deletions(-)

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Package xpose4 updated to version 4.3.2 with previous version 4.3.0 dated 2010-10-23

Title: Xpose 4
Description: Xpose is collection of packages to be used as a model building aid for non-linear mixed effects (population) analysis using NONMEM. It facilitates data set checkout, exploration and visualization, model diagnostics, candidate covariate identification and model comparison. xpose4 is a package that links the other 4 packages together.
Author: E. Niclas Jonsson , Andrew Hooker and Mats Karlsson
Maintainer: Andrew Hooker

Diff between xpose4 versions 4.3.0 dated 2010-10-23 and 4.3.2 dated 2010-11-30

 DESCRIPTION        |   12 ++++++------
 inst/changelog.txt |    5 +++++
 inst/readme.txt    |    2 +-
 3 files changed, 12 insertions(+), 7 deletions(-)

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Package spdep updated to version 0.5-26 with previous version 0.5-24 dated 2010-10-09

Title: Spatial dependence: weighting schemes, statistics and models
Description: A collection of functions to create spatial weights matrix objects from polygon contiguities, from point patterns by distance and tesselations, for summarising these objects, and for permitting their use in spatial data analysis, including regional aggregation by minimum spanning tree; a collection of tests for spatial autocorrelation, including global Moran's I, APLE, Geary's C, Hubert/Mantel general cross product statistic, Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G and multicoloured join count statistics, local Moran's I and Getis/Ord G, saddlepoint approximations and exact tests for global and local Moran's I; and functions for estimating spatial simultaneous autoregressive (SAR) lag and error models, impact measures for lag models, weighted and unweighted SAR and CAR spatial regression models, semi-parametric and Moran eigenvector spatial filtering, GM SAR error models, and generalized spatial two stage least squares models.
Author: Roger Bivand , with contributions by Micah Altman, Luc Anselin, Renato Assunção, Olaf Berke, Andrew Bernat, Guillaume Blanchet, Eric Blankmeyer, Marilia Carvalho, Bjarke Christensen, Yongwan Chun, Carsten Dormann, Stéphane Dray, Rein Halbersma, Elias Krainski, Nicholas Lewin-Koh, Hongfei Li, Jielai Ma, Giovanni Millo, Werner Mueller, Hisaji Ono, Pedro Peres-Neto, Gianfranco Piras, Markus Reder, Michael Tiefelsdorf, and Danlin Yu.
Maintainer: Roger Bivand

Diff between spdep versions 0.5-24 dated 2010-10-09 and 0.5-26 dated 2010-11-30

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Package rgdal updated to version 0.6-31 with previous version 0.6-30 dated 2010-11-08

Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data Abstraction Library (GDAL) (>= 1.3.1) and access to projection/transformation operations from the PROJ.4 library. The GDAL and PROJ.4 libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both GDAL raster and OGR vector map data can be imported into R, and GDAL raster data and OGR vector data exported. Use is made of classes defined in the sp package. rgdal binaries for OSX are available from the CRAN (extras) repository.
Author: Timothy H. Keitt , Roger Bivand , Edzer Pebesma , Barry Rowlingson
Maintainer: Roger Bivand

Diff between rgdal versions 0.6-30 dated 2010-11-08 and 0.6-31 dated 2010-11-30

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 17 files changed, 236 insertions(+), 50 deletions(-)

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Package ltsa updated to version 1.4 with previous version 1.3 dated 2010-08-15

Title: Linear time series analysis
Description: Methods of developing linear time series modelling. Methods are given for loglikelihood computation, forecasting and simulation.
Author: A.I. McLeod, Hao Yu, Zinovi Krougly
Maintainer: A.I. McLeod

Diff between ltsa versions 1.3 dated 2010-08-15 and 1.4 dated 2010-11-30

 DESCRIPTION         |    8 ++++----
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 4 files changed, 7 insertions(+), 8 deletions(-)

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Package hydroTSM updated to version 0.2-1 with previous version 0.2-0 dated 2010-10-11

Title: Time series management, analysis and interpolation for hydrological modelling
Description: S3 functions for management, analysis, interpolation and plot of hydrological time series, mainly oriented to hydrological modelling tasks. So far, it only works with daily / monthly / seasonal / annual time series. The focus of this package has been put in providing a collection of tools useful for the daily work of hydrologists (although an effort was made to optimize each function as much as possible, functionality has had priority over speed). Bugs / comments / questions / collaboration of any kind are very welcomed, and in particular, datasets that can be included in this package for academic purposes.
Author: Mauricio Zambrano-Bigiarini
Maintainer: Mauricio Zambrano-Bigiarini

Diff between hydroTSM versions 0.2-0 dated 2010-10-11 and 0.2-1 dated 2010-11-30

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 63 files changed, 146 insertions(+), 101 deletions(-)

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Package hydroGOF updated to version 0.2-1 with previous version 0.2-0 dated 2010-10-08

Title: Goodness-of-fit functions for comparison of simulated and observed hydrological time series
Description: S3 functions implementing both statistical and graphical goodnes-of-fit measures between observed and simulated values, mainly oriented to be used during the calibration, validation, and application of hydrological models. Missing values in observed and/or simulated values can removed before the computations. Comments / questions / collaboration of any kind are very welcomed.
Author: Mauricio Zambrano Bigiarini
Maintainer: Mauricio Zambrano Bigiarini

Diff between hydroGOF versions 0.2-0 dated 2010-10-08 and 0.2-1 dated 2010-11-30

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 35 files changed, 41 insertions(+), 2698 deletions(-)

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Package cacheSweave updated to version 0.4-5 with previous version 0.4-4 dated 2010-02-15

Title: Tools for caching Sweave computations
Description: Tools for caching Sweave computations and storing them in key-value databases
Author: Roger D. Peng
Maintainer: Roger D. Peng

Diff between cacheSweave versions 0.4-4 dated 2010-02-15 and 0.4-5 dated 2010-11-30

 DESCRIPTION              |   11 +-
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Package WMTregions updated to version 2.5.4 with previous version 2.3.10 dated 2010-11-03

Title: Exact calculation of WMTR
Description: R realization of an exact algorithm for calculating WMT regions
Author: Pavel Bazovkin
Maintainer: Pavel Bazovkin

Diff between WMTregions versions 2.3.10 dated 2010-11-03 and 2.5.4 dated 2010-11-30

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 16 files changed, 442 insertions(+), 404 deletions(-)

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Package Rmpi updated to version 0.5-9 with previous version 0.5-8 dated 2010-01-19

Title: Interface (Wrapper) to MPI (Message-Passing Interface)
Description: Rmpi provides an interface (wrapper) to MPI APIs. It also provides interactive R slave environment.
Author: Hao Yu
Maintainer: Hao Yu

Diff between Rmpi versions 0.5-8 dated 2010-01-19 and 0.5-9 dated 2010-11-30

 DESCRIPTION             |    8 +--
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 14 files changed, 139 insertions(+), 86 deletions(-)

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Package FGN updated to version 1.4 with previous version 1.3 dated 2010-08-15

Title: Fractional Gaussian Noise, estimation and simulaton
Description: MLE for H parameter in FGN; MLE for regression with FGN error; simulation of FGN; print, summary, plot, coef, residuals, Boot methods.
Author: A.I. McLeod
Maintainer: A.I. McLeod

Diff between FGN versions 1.3 dated 2010-08-15 and 1.4 dated 2010-11-30

 DESCRIPTION        |    8 ++++----
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Package spgrass6 updated to version 0.6-21 with previous version 0.6-20 dated 2010-08-30

Title: Interface between GRASS 6 geographical information system and R
Description: Interpreted interface between GRASS 6 geographical information system and R, based on starting R from within the GRASS environment, or running free-standing R in a temporary GRASS location; the package provides facilities for using all GRASS commands from the R command line.
Author: Roger Bivand
Maintainer: Roger Bivand

Diff between spgrass6 versions 0.6-20 dated 2010-08-30 and 0.6-21 dated 2010-11-30

 ChangeLog        |    7 ++++++-
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 5 files changed, 20 insertions(+), 10 deletions(-)

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Package fame updated to version 2.11 with previous version 2.10 dated 2010-11-18

Title: Interface for FAME time series database
Description: Read and write FAME databases.
Author: Jeff Hallman
Maintainer: Jeff Hallman

Diff between fame versions 2.10 dated 2010-11-18 and 2.11 dated 2010-11-30

 DESCRIPTION           |    6 +++---
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New package RcmdrPlugin.EHESsampling with initial version 1.0
Package: RcmdrPlugin.EHESsampling
Type: Package
Title: Tools for sampling in European Health Examination Surveys (EHES)
Version: 1.0
Date: 2010-11-24
Depends: Rcmdr (>= 1.3-0), lpSolve, sampling, MASS, tcltk2, Hmisc (>= 3.8-0)
Author: Statistics Norway
Maintainer: Susie Cooper & Johan heldal
Description: This package includes tools useful for European Health Examination Surveys. Includes selecting a two-stage sample and creating and checking encoded serial numbers.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-11-30 13:11:40 UTC; coo
Repository: CRAN
Date/Publication: 2010-11-30 14:19:11

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Package CompRandFld updated to version 0.9 with previous version 0.8 dated 2010-11-17

Title: Composite-likelihood based Analysis of Random Fields
Description: The aim of this package is to collect a set of procedures for the analysis of Random Fields by Composite Likelihood methods. Spatial analysis often involves dealing with large dataset. Therefore even simple studies may be too computationally demanding. Composite likelihood based methods are emerging as useful tools for mitigating such computational problems and show satisfactory results when compared with other techniques such as, for example the tapering method. Moreover, composite likelihood (and related quantities) have some good properties similar to those of the standard likelihood.
Author: Simone Padoan , Moreno Bevilacqua
Maintainer: Simone Padoan

Diff between CompRandFld versions 0.8 dated 2010-11-17 and 0.9 dated 2010-11-30

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Package simecol updated to version 0.7 with previous version 0.6-11 dated 2010-10-04

Title: Simulation of ecological (and other) dynamic systems
Description: simecol is an object oriented framework to simulate ecological (and other) dynamic systems. It can be used for differential equations, individual-based (or agent-based) and other models as well. The package helps to organize scenarios (avoids copy and paste) and improves readability and usability of code.
Author: Thomas Petzoldt
Maintainer: Thomas Petzoldt

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New package mixsep with initial version 0.1
Package: mixsep
Version: 0.1
Date: 2010-10-30
Title: Forensic Genetics DNA Mixture Separation
Author: Torben Tvedebrink
Maintainer: Torben Tvedebrink
Description: Separates DNA mixtures using a statistical model within a greedy algorithm.
Depends: R (>= 2.0.0), tcltk, tcltk2, MASS
License: GPL (>= 2)
Packaged: 2010-11-30 05:16:02 UTC; tvede
Repository: CRAN
Date/Publication: 2010-11-30 10:13:56

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Package rjson updated to version 0.2.2 with previous version 0.2.1 dated 2010-08-10

Title: JSON for R
Description: Converts R object into JSON objects and vice-versa
Author: Alex Couture-Beil
Maintainer: Alex Couture-Beil

Diff between rjson versions 0.2.1 dated 2010-08-10 and 0.2.2 dated 2010-11-30

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Package qtl updated to version 1.19-20 with previous version 1.18-7 dated 2010-08-18

Title: Tools for analyzing QTL experiments
Description: Analysis of experimental crosses to identify genes (called quantitative trait loci, QTLs) contributing to variation in quantitative traits.
Author: Karl W Broman and Hao Wu, with ideas from Gary Churchill and Saunak Sen and contributions from Danny Arends, Ritsert Jansen, Pjotr Prins, and Brian Yandell
Maintainer: Karl W Broman

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Package minqa updated to version 1.1.13 with previous version 1.1.9 dated 2010-07-24

Title: Derivative-free optimization algorithms by quadratic approximation
Description: Derivative-free optimization by quadratic approximation based on an interface to Fortran implementations by M. J. D. Powell
Author: Douglas Bates, Katharine M. Mullen, John C. Nash, Ravi Varadhan
Maintainer: Katharine M. Mullen

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Package lordif updated to version 0.1-9 with previous version 0.1-8 dated 2010-10-23

Title: Logistic Regression Differential Item Functioning using IRT
Description: Analysis of Differential Item Functioning (DIF) for dichotomous and polytomous items using an iterative hybrid of (ordinal) logistic regression and item response theory (IRT)
Author: Seung W. Choi, with contributions from Laura E. Gibbons and Paul K. Crane
Maintainer: Seung W. Choi

Diff between lordif versions 0.1-8 dated 2010-10-23 and 0.1-9 dated 2010-11-30

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Package asbio updated to version 0.3-27 with previous version 0.3-24 dated 2010-09-19

Title: A collection of statistical tools for biologists
Description: Contains functions from the book: "Applied Statistics for Biologists"
Author: Ken Aho; many thanks to V. Winston and D. Roberts
Maintainer: Ken Aho

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Package cimis updated to version 0.1-7 with previous version 0.1-6 dated 2010-10-29

Title: R package for retrieving data from CIMIS.
Description: A set of functions for retrieving data from CIMIS, the California Irrigation Management Information System.
Author: Greg Hirson
Maintainer: Greg Hirson

Diff between cimis versions 0.1-6 dated 2010-10-29 and 0.1-7 dated 2010-11-30

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Package RQuantLib updated to version 0.3.5 with previous version 0.3.4 dated 2010-08-09

Title: R interface to the QuantLib library
Description: The RQuantLib package makes parts of QuantLib visible to the R user. Currently a number option pricing functions are included, both vanilla and exotic, as well as a broad range of fixed-income functions. Also included are general calendaring and holiday utilities. Further software contributions are welcome. The QuantLib project aims to provide a comprehensive software framework for quantitative finance. The goal is to provide a standard open source library for quantitative analysis, modeling, trading, and risk management of financial assets. The Windows binary version is self-contained and does not require a QuantLib (or Boost) installation. RQuantLib uses the Rcpp R/C++ interface class library. See the Rcpp package on CRAN (or R-Forge) for more information on Rcpp. Note that while RQuantLib's code is licensed under the GPL (v2 or later), QuantLib itself is released under a somewhat less restrictive Open Source license (see QuantLib-License.txt).
Author: Dirk Eddelbuettel and Khanh Nguyen
Maintainer: Dirk Eddelbuettel

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Package Modalclust updated to version 0.2 with previous version 0.1 dated 2010-11-13

Title: Hierarchical Modal Clustering
Description: Perfroms Modal Clustering (MAC) including Hierarchical Modal Clustering (HMAC) along with their parallel implementation (PHMAC) over several processors. These model-based non-parametric clustering techniques can extract clusters in very high dimensions with arbitrary density shapes. By default clustering is performed over several resolutions and the results are summarized as a hierarchical tree. Associated plot functions are also provided. There is a package vignette that provides many examples.
Author: Surajit Ray and Yansong Cheng
Maintainer: Surajit Ray

Diff between Modalclust versions 0.1 dated 2010-11-13 and 0.2 dated 2010-11-30

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