Title: Xpose 4 Specific Functions Package
Diff between xpose4specific versions 4.3.0 dated 2010-10-23 and 4.3.2 dated 2010-11-30
More information about xpose4specific at CRAN
Description: Xpose is collection of packages to be used as a model
building aid for non-linear mixed effects (population) analysis
using NONMEM. It facilitates data set checkout, exploration and
visualization, model diagnostics, candidate covariate
identification and model comparison. Xpose4specific is a
package containing specific plotting functions, which require
relatively little user input, but are less customizable than
the plot commands found in xpose4generic.
Author: E. Niclas Jonsson
Maintainer: Andrew Hooker
DESCRIPTION | 10 +++++-----
R/add.model.comp.R | 9 ++++-----
R/add.model.comp.cwres.R | 10 +++++-----
R/basic.model.comp.cwres.R | 8 ++++----
R/dOFV.vs.cov.R | 5 ++++-
R/dOFV.vs.id.R | 3 ++-
R/dOFV1.vs.dOFV2.R | 4 ++--
R/ind.plots.R | 2 +-
R/xpose.VPC.R | 10 +++++-----
R/xpose.gam.R | 7 +++++++
inst/changelog.txt | 5 +++++
inst/readme.txt | 2 +-
man/dOFV.vs.cov.Rd | 2 +-
man/dOFV.vs.id.Rd | 4 ++--
man/dOFV1.vs.dOFV2.Rd | 2 +-
man/dv.preds.vs.idv.Rd | 2 +-
16 files changed, 50 insertions(+), 35 deletions(-)
Permanent link
Title: Xpose 4 Generic Functions Package
Diff between xpose4generic versions 4.3.0 dated 2010-10-23 and 4.3.2 dated 2010-11-30
Description: Xpose is collection of packages to be used as a model
building aid for non-linear mixed effects (population) analysis
using NONMEM. It facilitates data set checkout, exploration and
visualization, model diagnostics, candidate covariate
identification and model comparison. xpose4generic is a package
containing generic functions for plotting, as well as class
definitions. Highly customizeable, but requires more user
input that xpose4specific.
Author: E. Niclas Jonsson
Maintainer: Andrew Hooker
DESCRIPTION | 10 +++++-----
R/xpose.create.title.R | 3 +--
inst/changelog.txt | 5 +++++
inst/readme.txt | 2 +-
4 files changed, 12 insertions(+), 8 deletions(-)
Title: Xpose 4 Data Functions Package
Diff between xpose4data versions 4.3.0 dated 2010-10-23 and 4.3.2 dated 2010-11-30
Description: Xpose is collection of packages to be used as a model
building aid for non-linear mixed effects (population) analysis
using NONMEM. It facilitates data set checkout, exploration and
visualization, model diagnostics, candidate covariate
identification and model comparison. xpose4data is a package
containing functions for reading in data from NONMEM, support
functions, as well as class definitions.
Author: E. Niclas Jonsson
Maintainer: Andrew Hooker
DESCRIPTION | 8 ++++----
R/read.phi.R | 3 ++-
R/xpose.data.R | 1 +
inst/changelog.txt | 5 +++++
inst/readme.txt | 2 +-
man/read.nm.output.Rd | 4 +++-
6 files changed, 16 insertions(+), 7 deletions(-)
Title: Xpose 4 Classic Menu System
Diff between xpose4classic versions 4.3.0 dated 2010-10-23 and 4.3.2 dated 2010-11-30
Description: Xpose is collection of packages to be used as a model
building aid for non-linear mixed effects (population) analysis
using NONMEM. It facilitates data set checkout, exploration and
visualization, model diagnostics, candidate covariate
identification and model comparison. xpose4classic is a package
containing functions for runing the classic menu system in
Xpose.
Author: E. Niclas Jonsson
Maintainer: Andrew Hooker
DESCRIPTION | 10 +++++-----
R/xpose4.R | 2 +-
inst/changelog.txt | 5 +++++
inst/readme.txt | 2 +-
4 files changed, 12 insertions(+), 7 deletions(-)
Title: Xpose 4
Diff between xpose4 versions 4.3.0 dated 2010-10-23 and 4.3.2 dated 2010-11-30
Description: Xpose is collection of packages to be used as a model
building aid for non-linear mixed effects (population) analysis
using NONMEM. It facilitates data set checkout, exploration and
visualization, model diagnostics, candidate covariate
identification and model comparison. xpose4 is a package that
links the other 4 packages together.
Author: E. Niclas Jonsson
Maintainer: Andrew Hooker
DESCRIPTION | 12 ++++++------
inst/changelog.txt | 5 +++++
inst/readme.txt | 2 +-
3 files changed, 12 insertions(+), 7 deletions(-)
Title: Spatial dependence: weighting schemes, statistics and models
Diff between spdep versions 0.5-24 dated 2010-10-09 and 0.5-26 dated 2010-11-30
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by
distance and tesselations, for summarising these objects, and
for permitting their use in spatial data analysis, including
regional aggregation by minimum spanning tree; a collection of
tests for spatial autocorrelation, including global Moran's I,
APLE, Geary's C, Hubert/Mantel general cross product statistic,
Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G
and multicoloured join count statistics, local Moran's I and
Getis/Ord G, saddlepoint approximations and exact tests for
global and local Moran's I; and functions for estimating
spatial simultaneous autoregressive (SAR) lag and error models,
impact measures for lag models, weighted and unweighted SAR and
CAR spatial regression models, semi-parametric and Moran
eigenvector spatial filtering, GM SAR error models, and
generalized spatial two stage least squares models.
Author: Roger Bivand
Maintainer: Roger Bivand
spdep-0.5-24/spdep/INDEX |only
spdep-0.5-24/spdep/oChangelog |only
spdep-0.5-24/spdep/svn2cl.xsl |only
spdep-0.5-26/spdep/ChangeLog | 27 +++++++++++
spdep-0.5-26/spdep/DESCRIPTION | 20 ++++----
spdep-0.5-26/spdep/NAMESPACE | 2
spdep-0.5-26/spdep/R/aple.mc.R | 2
spdep-0.5-26/spdep/R/impacts.R | 77 +++++++++++++++++++++-----------
spdep-0.5-26/spdep/R/lm.morantest.R | 9 ++-
spdep-0.5-26/spdep/R/nb2mat.R | 37 ++++++++++++---
spdep-0.5-26/spdep/R/rotation.R |only
spdep-0.5-26/spdep/R/sacsarlm.R | 1
spdep-0.5-26/spdep/R/spChkOption.R | 8 ++-
spdep-0.5-26/spdep/R/summary.nb.R | 5 +-
spdep-0.5-26/spdep/R/tolerance.nb.R |only
spdep-0.5-26/spdep/inst/ChangeLog | 27 +++++++++++
spdep-0.5-26/spdep/inst/doc/CO69.pdf |binary
spdep-0.5-26/spdep/inst/doc/sids.pdf |binary
spdep-0.5-26/spdep/man/mat2listw.Rd | 24 +++++++---
spdep-0.5-26/spdep/man/rotation.Rd |only
spdep-0.5-26/spdep/man/tolerance.nb.Rd |only
spdep-0.5-26/spdep/man/trW.Rd | 9 ++-
spdep-0.5-26/spdep/spdep-Ex.R | 79 +++++++++++++++++++++++++++++++++
spdep-0.5-26/spdep/src/dnn.c | 1
spdep-0.5-26/spdep/src/init.c | 1
spdep-0.5-26/spdep/src/knn.c | 1
spdep-0.5-26/spdep/src/mom_calc.c |only
spdep-0.5-26/spdep/src/nbdists.c | 1
spdep-0.5-26/spdep/src/spdep.h | 3 +
29 files changed, 273 insertions(+), 61 deletions(-)
Title: Bindings for the Geospatial Data Abstraction Library
Diff between rgdal versions 0.6-30 dated 2010-11-08 and 0.6-31 dated 2010-11-30
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.3.1) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
rgdal binaries for OSX are available from the CRAN (extras)
repository.
Author: Timothy H. Keitt
Maintainer: Roger Bivand
rgdal-0.6-30/rgdal/oChangeLog |only
rgdal-0.6-30/rgdal/svn2cl.xsl |only
rgdal-0.6-31/rgdal/ChangeLog | 24 +++++
rgdal-0.6-31/rgdal/DESCRIPTION | 8 -
rgdal-0.6-31/rgdal/R/sp_gdal.R | 23 ++++
rgdal-0.6-31/rgdal/inst/ChangeLog | 24 +++++
rgdal-0.6-31/rgdal/man/CRS-class.Rd | 5 -
rgdal-0.6-31/rgdal/man/GDALRasterBand-class.Rd | 3
rgdal-0.6-31/rgdal/man/SGDF2PCT.Rd | 3
rgdal-0.6-31/rgdal/man/SpatialGDAL-class.Rd | 3
rgdal-0.6-31/rgdal/man/displayDataset.Rd | 3
rgdal-0.6-31/rgdal/man/project.Rd | 3
rgdal-0.6-31/rgdal/man/readGDAL.Rd | 120 +++++++++++++++++++------
rgdal-0.6-31/rgdal/man/readOGR.Rd | 5 -
rgdal-0.6-31/rgdal/man/spTransform-methods.Rd | 9 +
rgdal-0.6-31/rgdal/man/writeOGR.Rd | 12 +-
rgdal-0.6-31/rgdal/src/gdal-bindings.cpp | 41 ++++++++
17 files changed, 236 insertions(+), 50 deletions(-)
Title: Linear time series analysis
Diff between ltsa versions 1.3 dated 2010-08-15 and 1.4 dated 2010-11-30
Description: Methods of developing linear time series modelling.
Methods are given for loglikelihood computation, forecasting
and simulation.
Author: A.I. McLeod, Hao Yu, Zinovi Krougly
Maintainer: A.I. McLeod
DESCRIPTION | 8 ++++----
NAMESPACE | 3 +--
NEWS |only
man/ltsa-package.Rd | 4 ++--
4 files changed, 7 insertions(+), 8 deletions(-)
Title: Time series management, analysis and interpolation for
hydrological modelling
Diff between hydroTSM versions 0.2-0 dated 2010-10-11 and 0.2-1 dated 2010-11-30
Description: S3 functions for management, analysis, interpolation and
plot of hydrological time series, mainly oriented to
hydrological modelling tasks. So far, it only works with daily
/ monthly / seasonal / annual time series. The focus of this
package has been put in providing a collection of tools useful
for the daily work of hydrologists (although an effort was made
to optimize each function as much as possible, functionality
has had priority over speed). Bugs / comments / questions /
collaboration of any kind are very welcomed, and in particular,
datasets that can be included in this package for academic
purposes.
Author: Mauricio Zambrano-Bigiarini
Maintainer: Mauricio Zambrano-Bigiarini
hydroTSM-0.2-0/hydroTSM/R/hydroSP.R |only
hydroTSM-0.2-0/hydroTSM/R/hydroTSM.R |only
hydroTSM-0.2-1/hydroTSM/ChangeLog |only
hydroTSM-0.2-1/hydroTSM/DESCRIPTION | 8 -
hydroTSM-0.2-1/hydroTSM/Install.txt | 7 -
hydroTSM-0.2-1/hydroTSM/R/annualfunction.R |only
hydroTSM-0.2-1/hydroTSM/R/daily2annual.R |only
hydroTSM-0.2-1/hydroTSM/R/daily2monthly.R |only
hydroTSM-0.2-1/hydroTSM/R/dip.R |only
hydroTSM-0.2-1/hydroTSM/R/diy.R |only
hydroTSM-0.2-1/hydroTSM/R/dm2seasonal.R |only
hydroTSM-0.2-1/hydroTSM/R/drawxaxis.R |only
hydroTSM-0.2-1/hydroTSM/R/dwdays.R |only
hydroTSM-0.2-1/hydroTSM/R/dwi.R |only
hydroTSM-0.2-1/hydroTSM/R/extractzoo.R |only
hydroTSM-0.2-1/hydroTSM/R/fdc.R |only
hydroTSM-0.2-1/hydroTSM/R/fdcu.R |only
hydroTSM-0.2-1/hydroTSM/R/gists2spt.R |only
hydroTSM-0.2-1/hydroTSM/R/hydrokrige.R |only
hydroTSM-0.2-1/hydroTSM/R/hydropairs.R |only
hydroTSM-0.2-1/hydroTSM/R/hydroplot.R |only
hydroTSM-0.2-1/hydroTSM/R/hypsometric.R |only
hydroTSM-0.2-1/hydroTSM/R/infillxy.R |only
hydroTSM-0.2-1/hydroTSM/R/istdx.R |only
hydroTSM-0.2-1/hydroTSM/R/izoo2rzoo.R |only
hydroTSM-0.2-1/hydroTSM/R/ma.R |only
hydroTSM-0.2-1/hydroTSM/R/matrixplot.R |only
hydroTSM-0.2-1/hydroTSM/R/mip.R |only
hydroTSM-0.2-1/hydroTSM/R/monthly2annual.R |only
hydroTSM-0.2-1/hydroTSM/R/monthlyfunction.R |only
hydroTSM-0.2-1/hydroTSM/R/mspplot.R |only
hydroTSM-0.2-1/hydroTSM/R/rm1stchar.R |only
hydroTSM-0.2-1/hydroTSM/R/seasonalfunction.R |only
hydroTSM-0.2-1/hydroTSM/R/sfreq.R |only
hydroTSM-0.2-1/hydroTSM/R/smry.R |only
hydroTSM-0.2-1/hydroTSM/R/sname2plot.R |only
hydroTSM-0.2-1/hydroTSM/R/sname2ts.R |only
hydroTSM-0.2-1/hydroTSM/R/stdx.R |only
hydroTSM-0.2-1/hydroTSM/R/time2season.R |only
hydroTSM-0.2-1/hydroTSM/R/vector2zoo.R |only
hydroTSM-0.2-1/hydroTSM/R/yip.R |only
hydroTSM-0.2-1/hydroTSM/R/zoo2RHtest.R |only
hydroTSM-0.2-1/hydroTSM/WhatsNew.txt | 11 --
hydroTSM-0.2-1/hydroTSM/man/annualfunction.Rd | 2
hydroTSM-0.2-1/hydroTSM/man/daily2annual.Rd | 4
hydroTSM-0.2-1/hydroTSM/man/daily2monthly.Rd | 2
hydroTSM-0.2-1/hydroTSM/man/dip.Rd | 2
hydroTSM-0.2-1/hydroTSM/man/dm2seasonal.Rd | 2
hydroTSM-0.2-1/hydroTSM/man/drawxaxis.Rd | 6 +
hydroTSM-0.2-1/hydroTSM/man/dwdays.Rd | 2
hydroTSM-0.2-1/hydroTSM/man/dwi.Rd | 2
hydroTSM-0.2-1/hydroTSM/man/fdc.Rd | 32 ++++---
hydroTSM-0.2-1/hydroTSM/man/fdcu.Rd | 26 +++---
hydroTSM-0.2-1/hydroTSM/man/hydroTSM-package.Rd | 8 -
hydroTSM-0.2-1/hydroTSM/man/hydroplot.Rd | 100 ++++++++++++++++--------
hydroTSM-0.2-1/hydroTSM/man/izoo2rzoo.Rd | 2
hydroTSM-0.2-1/hydroTSM/man/matrixplot.Rd | 1
hydroTSM-0.2-1/hydroTSM/man/mip.Rd | 2
hydroTSM-0.2-1/hydroTSM/man/monthlyfunction.Rd | 2
hydroTSM-0.2-1/hydroTSM/man/seasonalfunction.Rd | 2
hydroTSM-0.2-1/hydroTSM/man/sname2ts.Rd | 20 +++-
hydroTSM-0.2-1/hydroTSM/man/vector2zoo.Rd | 2
hydroTSM-0.2-1/hydroTSM/man/yip.Rd | 2
63 files changed, 146 insertions(+), 101 deletions(-)
Title: Goodness-of-fit functions for comparison of simulated and
observed hydrological time series
Diff between hydroGOF versions 0.2-0 dated 2010-10-08 and 0.2-1 dated 2010-11-30
Description: S3 functions implementing both statistical and graphical
goodnes-of-fit measures between observed and simulated values,
mainly oriented to be used during the calibration, validation,
and application of hydrological models. Missing values in
observed and/or simulated values can removed before the
computations. Comments / questions / collaboration of any kind
are very welcomed.
Author: Mauricio Zambrano Bigiarini
Maintainer: Mauricio Zambrano Bigiarini
Changelog |only
DESCRIPTION | 8
R/NSeff.R |only
R/br2.R |only
R/cp.R |only
R/d.R |only
R/ggof.R |only
R/gof.R |only
R/hydroGOF.R | 2676 ------------------------------------------------
R/mNSEff.R |only
R/mae.R |only
R/md.R |only
R/me.R |only
R/mse.R |only
R/nrmse.R |only
R/pbias.R |only
R/pbiasfdc.R |only
R/pfactor.R |only
R/plot2.R |only
R/plotbands.R |only
R/plotbandsonly.R |only
R/rNSeff.R |only
R/rPearson.R |only
R/rSD.R |only
R/rd.R |only
R/rfactor.R |only
R/rmse.R |only
R/rsr.R |only
R/ssq.R |only
R/valindex.R |only
man/ggof.Rd | 11
man/hydroGOF-package.Rd | 8
man/plot2.Rd | 5
man/plotbands.Rd | 31
man/plotbandsonly.Rd |only
35 files changed, 41 insertions(+), 2698 deletions(-)
Title: Tools for caching Sweave computations
Diff between cacheSweave versions 0.4-4 dated 2010-02-15 and 0.4-5 dated 2010-11-30
Description: Tools for caching Sweave computations and storing them in
key-value databases
Author: Roger D. Peng
Maintainer: Roger D. Peng
DESCRIPTION | 11 +-
R/SweaveCache.R | 228 +++++++++++++++++++++++++++--------------------
inst/doc/cacheSweave.pdf |binary
inst/doc/cacheSweave.tex |only
4 files changed, 139 insertions(+), 100 deletions(-)
Title: Exact calculation of WMTR
Diff between WMTregions versions 2.3.10 dated 2010-11-03 and 2.5.4 dated 2010-11-30
Description: R realization of an exact algorithm for calculating WMT
regions
Author: Pavel Bazovkin
Maintainer: Pavel Bazovkin
DESCRIPTION | 10
R/WMTR.R | 25 -
R/WMTregions-internal.R | 9
R/generTRsample.R | 42 --
R/loadWMTR.R | 19 -
R/pointinTR.R | 23 -
R/showWMTR.R | 31 --
R/visualWMTR.R |only
man/WMTR.Rd | 6
man/WMTregions-package.Rd | 6
man/loadWMTR.Rd | 7
man/pointinTR.Rd | 3
man/visualWMTR.Rd |only
src/Agents.cpp | 661 +++++++++++++++++++++++++---------------------
src/Makevars.win | 3
src/Objects.cpp | 1
16 files changed, 442 insertions(+), 404 deletions(-)
Title: Interface (Wrapper) to MPI (Message-Passing Interface)
Diff between Rmpi versions 0.5-8 dated 2010-01-19 and 0.5-9 dated 2010-11-30
Description: Rmpi provides an interface (wrapper) to MPI APIs. It also
provides interactive R slave environment.
Author: Hao Yu
Maintainer: Hao Yu
DESCRIPTION | 8 +--
R/Rmpi.R | 10 ----
R/Rng.R | 5 +-
R/Rparutilities.R | 109 ++++++++++++++++++++++++++++++------------------
R/zzz.R | 4 -
configure | 19 +++++++-
configure.ac | 19 +++++++-
inst/Rslaves.bat | 33 +++++---------
inst/Rslaves32.bat |only
inst/Rslaves64.bat |only
man/hosts.Rd | 6 +-
man/mpi.scatter.Robj.Rd | 7 +++
src/Rmpi.c | 4 +
src/Rmpi.h | 1
14 files changed, 139 insertions(+), 86 deletions(-)
Title: Fractional Gaussian Noise, estimation and simulaton
Diff between FGN versions 1.3 dated 2010-08-15 and 1.4 dated 2010-11-30
Description: MLE for H parameter in FGN; MLE for regression with FGN
error; simulation of FGN; print, summary, plot, coef,
residuals, Boot methods.
Author: A.I. McLeod
Maintainer: A.I. McLeod
DESCRIPTION | 8 ++++----
NAMESPACE | 2 +-
NEWS |only
man/FGN-package.Rd | 4 ++--
4 files changed, 7 insertions(+), 7 deletions(-)
Title: Interface between GRASS 6 geographical information system and R
Diff between spgrass6 versions 0.6-20 dated 2010-08-30 and 0.6-21 dated 2010-11-30
Description: Interpreted interface between GRASS 6 geographical
information system and R, based on starting R from within the
GRASS environment, or running free-standing R in a temporary
GRASS location; the package provides facilities for using all
GRASS commands from the R command line.
Author: Roger Bivand
Maintainer: Roger Bivand
ChangeLog | 7 ++++++-
DESCRIPTION | 8 ++++----
R/xml1.R | 4 ++--
inst/ChangeLog | 7 ++++++-
man/execGRASS.Rd | 4 ++--
5 files changed, 20 insertions(+), 10 deletions(-)
Title: Interface for FAME time series database
Diff between fame versions 2.10 dated 2010-11-18 and 2.11 dated 2010-11-30
Description: Read and write FAME databases.
Author: Jeff Hallman
Maintainer: Jeff Hallman
DESCRIPTION | 6 +++---
NEWS | 4 ++++
R/fame.R | 13 +++++++++----
man/fameConnection.Rd | 2 +-
4 files changed, 17 insertions(+), 8 deletions(-)
More information about RcmdrPlugin.EHESsampling at CRAN
Permanent link
Title: Composite-likelihood based Analysis of Random Fields
Diff between CompRandFld versions 0.8 dated 2010-11-17 and 0.9 dated 2010-11-30
Description: The aim of this package is to collect a set of procedures
for the analysis of Random Fields by Composite Likelihood
methods. Spatial analysis often involves dealing with large
dataset. Therefore even simple studies may be too
computationally demanding. Composite likelihood based methods
are emerging as useful tools for mitigating such computational
problems and show satisfactory results when compared with other
techniques such as, for example the tapering method. Moreover,
composite likelihood (and related quantities) have some good
properties similar to those of the standard likelihood.
Author: Simone Padoan
Maintainer: Simone Padoan
CompRandFld-0.8/CompRandFld/man/OptimCompLik.Rd |only
CompRandFld-0.8/CompRandFld/man/OptimLik.Rd |only
CompRandFld-0.8/CompRandFld/man/Wls.Rd |only
CompRandFld-0.9/CompRandFld/DESCRIPTION | 8
CompRandFld-0.9/CompRandFld/R/CompositeLikelihood.r | 135 +++----
CompRandFld-0.9/CompRandFld/R/Covariogram.r | 24 +
CompRandFld-0.9/CompRandFld/R/Distributions.r | 205 ++++++++++
CompRandFld-0.9/CompRandFld/R/EmpiricalEstimators.r |only
CompRandFld-0.9/CompRandFld/R/Fitting.r | 34 -
CompRandFld-0.9/CompRandFld/R/Likelihood.r | 149 +++----
CompRandFld-0.9/CompRandFld/R/Utility.r | 35 +
CompRandFld-0.9/CompRandFld/R/WeightedLeastSquare.r | 189 ++++++---
CompRandFld-0.9/CompRandFld/inst/doc/CompRandFld-manual.pdf |binary
CompRandFld-0.9/CompRandFld/man/CheckCorrModel.Rd | 2
CompRandFld-0.9/CompRandFld/man/CheckInput.Rd | 14
CompRandFld-0.9/CompRandFld/man/CheckLikelihood.Rd | 2
CompRandFld-0.9/CompRandFld/man/CheckModel.Rd | 2
CompRandFld-0.9/CompRandFld/man/CheckParam.Rd | 2
CompRandFld-0.9/CompRandFld/man/CheckParamRange.Rd | 2
CompRandFld-0.9/CompRandFld/man/CheckType.Rd | 2
CompRandFld-0.9/CompRandFld/man/CheckVarType.Rd | 2
CompRandFld-0.9/CompRandFld/man/CompLikelihood.Rd | 64 ++-
CompRandFld-0.9/CompRandFld/man/CorrelationFct.Rd | 4
CompRandFld-0.9/CompRandFld/man/CorrelationParam.Rd | 2
CompRandFld-0.9/CompRandFld/man/Covariogram.Rd | 9
CompRandFld-0.9/CompRandFld/man/DetectParam.Rd | 4
CompRandFld-0.9/CompRandFld/man/Dist2Dist.Rd |only
CompRandFld-0.9/CompRandFld/man/EVariogram.Rd |only
CompRandFld-0.9/CompRandFld/man/FitComposite.Rd | 194 ++++++----
CompRandFld-0.9/CompRandFld/man/FitGev.Rd |only
CompRandFld-0.9/CompRandFld/man/GevLogLik.Rd |only
CompRandFld-0.9/CompRandFld/man/InitParam.Rd | 14
CompRandFld-0.9/CompRandFld/man/Likelihood.Rd | 36 +
CompRandFld-0.9/CompRandFld/man/LogNormDen.Rd | 4
CompRandFld-0.9/CompRandFld/man/MomEst.Rd |only
CompRandFld-0.9/CompRandFld/man/SetRangeParam.Rd | 4
CompRandFld-0.9/CompRandFld/man/WLeastSquare.Rd | 39 +-
CompRandFld-0.9/CompRandFld/man/WlsInit.Rd | 11
CompRandFld-0.9/CompRandFld/src/CompositeLikelihood.c | 105 +++++
CompRandFld-0.9/CompRandFld/src/Distributions.c |only
CompRandFld-0.9/CompRandFld/src/header.h | 71 +++
CompRandFld-0.9/CompRandFld/src/weightedleastsquare.c | 227 ++++++++++--
42 files changed, 1168 insertions(+), 427 deletions(-)
Title: Simulation of ecological (and other) dynamic systems
Diff between simecol versions 0.6-11 dated 2010-10-04 and 0.7 dated 2010-11-30
Description: simecol is an object oriented framework to simulate
ecological (and other) dynamic systems. It can be used for
differential equations, individual-based (or agent-based) and
other models as well. The package helps to organize scenarios
(avoids copy and paste) and improves readability and usability
of code.
Author: Thomas Petzoldt
Maintainer: Thomas Petzoldt
DESCRIPTION | 10
DESCRIPTION.$$$ |only
NAMESPACE | 2
R/sim.R | 6
data/lv3.rda |binary
inst/NEWS | 5
inst/ToDo.txt | 7
inst/doc/a-simecol-introduction.pdf |11513 ++++++++++++++++++------------------
inst/doc/b-simecol-howtos.pdf |binary
inst/doc/examples/diffusion_A.R | 2
inst/doc/examples/diffusion_B.R | 2
inst/doc/examples/lv3.R | 2
man/approxTime.Rd | 4
man/chemostat.Rd | 2
man/diffusion.Rd | 2
man/lv3.Rd | 2
16 files changed, 6086 insertions(+), 5473 deletions(-)
Title: JSON for R
Diff between rjson versions 0.2.1 dated 2010-08-10 and 0.2.2 dated 2010-11-30
Description: Converts R object into JSON objects and vice-versa
Author: Alex Couture-Beil
Maintainer: Alex Couture-Beil
DESCRIPTION | 8 ++--
inst/changelog.txt | 9 +++++
inst/doc/json_rpc_server.pdf |binary
inst/unittests/runtests.r | 2 -
src/parser.c | 70 ++++++++++++++++++++++++++++++-------------
5 files changed, 64 insertions(+), 25 deletions(-)
Title: Tools for analyzing QTL experiments
Diff between qtl versions 1.18-7 dated 2010-08-18 and 1.19-20 dated 2010-11-30
Description: Analysis of experimental crosses to identify genes (called
quantitative trait loci, QTLs) contributing to variation in
quantitative traits.
Author: Karl W Broman
Maintainer: Karl W Broman
qtl-1.18-7/qtl/INDEX |only
qtl-1.19-20/qtl/DESCRIPTION | 12
qtl-1.19-20/qtl/R/droponemarker.R |only
qtl-1.19-20/qtl/R/effectplot.R | 18
qtl-1.19-20/qtl/R/errorlod.R | 6
qtl-1.19-20/qtl/R/est.rf.R | 92
qtl-1.19-20/qtl/R/map_construction.R | 15
qtl-1.19-20/qtl/R/mqmcircleplot.R | 5
qtl-1.19-20/qtl/R/mqmscan.R | 8
qtl-1.19-20/qtl/R/plot.R | 103
qtl-1.19-20/qtl/R/ripple.R | 4
qtl-1.19-20/qtl/R/summary.scanone.R | 449 +-
qtl-1.19-20/qtl/R/summary.scantwo.R | 48
qtl-1.19-20/qtl/R/util.R | 176
qtl-1.19-20/qtl/R/xchr.R | 14
qtl-1.19-20/qtl/data/mapthis.RData |only
qtl-1.19-20/qtl/inst/README.txt | 16
qtl-1.19-20/qtl/inst/STATUS.txt | 101
qtl-1.19-20/qtl/inst/TODO.txt | 9
qtl-1.19-20/qtl/inst/docs/MQM-tour.pdf | 1871 ++++------
qtl-1.19-20/qtl/inst/docs/Sources/MQM/MQM-tour.Rnw | 3
qtl-1.19-20/qtl/inst/docs/Sources/MQM/mqm/standard_references.txt | 1
qtl-1.19-20/qtl/inst/docs/Sources/geneticmaps.Rnw |only
qtl-1.19-20/qtl/inst/docs/Sources/new_multiqtl.Rnw | 49
qtl-1.19-20/qtl/inst/docs/Sources/new_summary_scanone.Rnw | 16
qtl-1.19-20/qtl/inst/docs/Sources/new_summary_scantwo.Rnw | 13
qtl-1.19-20/qtl/inst/docs/Sources/rqtltour2.tex |only
qtl-1.19-20/qtl/inst/docs/geneticmaps.R |only
qtl-1.19-20/qtl/inst/docs/geneticmaps.pdf |only
qtl-1.19-20/qtl/inst/docs/new_multiqtl.R |only
qtl-1.19-20/qtl/inst/docs/new_multiqtl.pdf |binary
qtl-1.19-20/qtl/inst/docs/new_summary_scanone.R |only
qtl-1.19-20/qtl/inst/docs/new_summary_scanone.pdf |binary
qtl-1.19-20/qtl/inst/docs/new_summary_scantwo.R |only
qtl-1.19-20/qtl/inst/docs/new_summary_scantwo.pdf |binary
qtl-1.19-20/qtl/inst/docs/rqtltour2.R |only
qtl-1.19-20/qtl/inst/docs/rqtltour2.pdf |only
qtl-1.19-20/qtl/man/MQM.Rd | 1
qtl-1.19-20/qtl/man/c.scanone.Rd | 3
qtl-1.19-20/qtl/man/c.scanoneperm.Rd | 3
qtl-1.19-20/qtl/man/c.scantwo.Rd | 3
qtl-1.19-20/qtl/man/c.scantwoperm.Rd | 3
qtl-1.19-20/qtl/man/calc.errorlod.Rd | 2
qtl-1.19-20/qtl/man/calc.penalties.Rd | 2
qtl-1.19-20/qtl/man/cleanGeno.Rd |only
qtl-1.19-20/qtl/man/countXO.Rd | 2
qtl-1.19-20/qtl/man/droponemarker.Rd |only
qtl-1.19-20/qtl/man/est.rf.Rd | 3
qtl-1.19-20/qtl/man/fitqtl.Rd | 27
qtl-1.19-20/qtl/man/getid.Rd |only
qtl-1.19-20/qtl/man/locateXO.Rd | 7
qtl-1.19-20/qtl/man/mapthis.Rd |only
qtl-1.19-20/qtl/man/orderMarkers.Rd | 2
qtl-1.19-20/qtl/man/plot.geno.Rd | 4
qtl-1.19-20/qtl/man/plot.rf.Rd | 3
qtl-1.19-20/qtl/man/plot.rfmatrix.Rd |only
qtl-1.19-20/qtl/man/pull.rf.Rd |only
qtl-1.19-20/qtl/man/qtl-internal.Rd | 12
qtl-1.19-20/qtl/man/scanone.Rd | 6
qtl-1.19-20/qtl/man/stepwiseqtl.Rd | 2
qtl-1.19-20/qtl/man/subset.scanoneperm.Rd | 13
qtl-1.19-20/qtl/man/subset.scantwoperm.Rd | 13
qtl-1.19-20/qtl/man/summary.scanone.Rd | 47
qtl-1.19-20/qtl/man/summary.scanoneperm.Rd | 25
qtl-1.19-20/qtl/man/transformPheno.Rd | 2
qtl-1.19-20/qtl/man/tryallpositions.Rd | 4
qtl-1.19-20/qtl/man/typingGap.Rd |only
qtl-1.19-20/qtl/src/mqmaugment.h | 2
qtl-1.19-20/qtl/src/mqmdatatypes.h | 9
qtl-1.19-20/qtl/src/mqmprob.h | 1
qtl-1.19-20/qtl/src/mqmscan.h | 5
qtl-1.19-20/qtl/src/util.c | 58
qtl-1.19-20/qtl/src/util.h | 17
73 files changed, 2047 insertions(+), 1263 deletions(-)
Title: Derivative-free optimization algorithms by quadratic
approximation
Diff between minqa versions 1.1.9 dated 2010-07-24 and 1.1.13 dated 2010-11-30
Description: Derivative-free optimization by quadratic approximation
based on an interface to Fortran implementations by M. J. D.
Powell
Author: Douglas Bates, Katharine M. Mullen, John C. Nash, Ravi Varadhan
Maintainer: Katharine M. Mullen
ChangeLog | 51 +++++++++++++++++++++++++++++++++++++++
DESCRIPTION | 10 +++----
R/minqa.R | 71 ++++++++++++++++++++++++++++++++++++++++++++++++++++---
man/bobyqa.Rd | 30 +++++++++++++++++++++++
man/newuoa.Rd | 25 +++++++++++++++++++
man/uobyqa.Rd | 17 +++++++++++++
src/Makevars | 2 -
src/bobyqa.f | 22 +++++++++++++----
src/bobyqb.f | 38 ++++++++++++++++++++++++-----
src/minqa.cpp | 37 +++++++++++++++++-----------
src/newuoa.f | 15 ++++++++---
src/newuob.f | 10 +++++--
src/uobyqa.f | 11 ++++++--
src/uobyqb.f | 11 ++++++--
tests/newuoa.R |only
tests/rvaltest.R | 4 +--
16 files changed, 305 insertions(+), 49 deletions(-)
Title: Logistic Regression Differential Item Functioning using IRT
Diff between lordif versions 0.1-8 dated 2010-10-23 and 0.1-9 dated 2010-11-30
Description: Analysis of Differential Item Functioning (DIF) for
dichotomous and polytomous items using an iterative hybrid of
(ordinal) logistic regression and item response theory (IRT)
Author: Seung W. Choi, with contributions from Laura E. Gibbons and
Paul K. Crane
Maintainer: Seung W. Choi
DESCRIPTION | 8 ++++----
NAMESPACE | 4 ++--
R/plot.lordif.MC.R | 2 +-
R/plot.lordif.R | 2 +-
man/lordif-package.Rd | 4 ++--
5 files changed, 10 insertions(+), 10 deletions(-)
Title: A collection of statistical tools for biologists
Diff between asbio versions 0.3-24 dated 2010-09-19 and 0.3-27 dated 2010-11-30
Description: Contains functions from the book: "Applied Statistics for
Biologists"
Author: Ken Aho; many thanks to V. Winston and D. Roberts
Maintainer: Ken Aho
DESCRIPTION | 8 +-
R/Venn.R | 10 +++
R/anm.ls.r | 2
R/anm.ls.tck.r | 2
R/demos.r | 21 +++++-
R/loglik.tck.r | 149 ++++++++++++++++++++++--------------------------
R/print.ci.R | 2
R/see.HW.r | 6 -
R/see.M.r |only
R/see.logic.r |only
R/see.regression.r | 4 -
R/see.typeI_II.r |only
R/selftest.conf.r |only
R/selftest.pdfs.r | 12 +--
R/selftest.prob.r |only
R/selftest.sampd.r |only
R/win.R | 2
inst |only
man/anm.ls.rd | 2
man/demos.rd | 4 -
man/see.M.rd |only
man/see.logic.rd |only
man/see.typeI_II.rd |only
man/selftest.se.tck1.rd | 16 +++++
24 files changed, 134 insertions(+), 106 deletions(-)
Title: R package for retrieving data from CIMIS.
Diff between cimis versions 0.1-6 dated 2010-10-29 and 0.1-7 dated 2010-11-30
Description: A set of functions for retrieving data from CIMIS, the
California Irrigation Management Information System.
Author: Greg Hirson
Maintainer: Greg Hirson
DESCRIPTION | 8 ++++----
R/multicimis.R | 14 ++++++++++----
changelog | 5 +++++
man/cimisdaily.Rd | 4 ++--
4 files changed, 21 insertions(+), 10 deletions(-)
Title: R interface to the QuantLib library
Diff between RQuantLib versions 0.3.4 dated 2010-08-09 and 0.3.5 dated 2010-11-30
Description: The RQuantLib package makes parts of QuantLib visible to
the R user. Currently a number option pricing functions are
included, both vanilla and exotic, as well as a broad range of
fixed-income functions. Also included are general calendaring
and holiday utilities. Further software contributions are
welcome.
The QuantLib project aims to provide a comprehensive software framework
for quantitative finance. The goal is to provide a standard
open source library for quantitative analysis, modeling,
trading, and risk management of financial assets.
The Windows binary version is self-contained and does not require a
QuantLib (or Boost) installation.
RQuantLib uses the Rcpp R/C++ interface class library. See the Rcpp
package on CRAN (or R-Forge) for more information on Rcpp.
Note that while RQuantLib's code is licensed under the GPL (v2 or
later), QuantLib itself is released under a somewhat less
restrictive Open Source license (see QuantLib-License.txt).
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
RQuantLib-0.3.4/RQuantLib/INDEX |only
RQuantLib-0.3.4/RQuantLib/inst/ChangeLog |only
RQuantLib-0.3.4/RQuantLib/man/ConvertibleFixedCouponBond.Rd |only
RQuantLib-0.3.4/RQuantLib/man/ConvertibleFloatingCouponBond.Rd |only
RQuantLib-0.3.4/RQuantLib/man/ConvertibleZeroCouponBond.Rd |only
RQuantLib-0.3.4/RQuantLib/man/FixedRateBondPriceByYield.Rd |only
RQuantLib-0.3.4/RQuantLib/man/FixedRateBondYield.Rd |only
RQuantLib-0.3.4/RQuantLib/man/ZeroPriceByYield.Rd |only
RQuantLib-0.3.4/RQuantLib/man/ZeroYield.Rd |only
RQuantLib-0.3.4/RQuantLib/man/adjust.Rd |only
RQuantLib-0.3.4/RQuantLib/man/advance.Rd |only
RQuantLib-0.3.4/RQuantLib/man/businessDaysBetween.Rd |only
RQuantLib-0.3.4/RQuantLib/man/dayCount.Rd |only
RQuantLib-0.3.4/RQuantLib/man/yearFraction.Rd |only
RQuantLib-0.3.5/RQuantLib/ChangeLog |only
RQuantLib-0.3.5/RQuantLib/DESCRIPTION | 17 +-
RQuantLib-0.3.5/RQuantLib/man/AmericanOption.Rd | 8 -
RQuantLib-0.3.5/RQuantLib/man/AmericanOptionImpliedVolatility.Rd | 5
RQuantLib-0.3.5/RQuantLib/man/AsianOption.Rd | 5
RQuantLib-0.3.5/RQuantLib/man/BarrierOption.Rd | 2
RQuantLib-0.3.5/RQuantLib/man/BinaryOption.Rd | 3
RQuantLib-0.3.5/RQuantLib/man/BinaryOptionImpliedVolatility.Rd | 3
RQuantLib-0.3.5/RQuantLib/man/Bond.Rd | 15 +-
RQuantLib-0.3.5/RQuantLib/man/Calendars.Rd | 74 +++++++++-
RQuantLib-0.3.5/RQuantLib/man/CallableBond.Rd | 3
RQuantLib-0.3.5/RQuantLib/man/ConvertibleBond.Rd |only
RQuantLib-0.3.5/RQuantLib/man/EuropeanOption.Rd | 4
RQuantLib-0.3.5/RQuantLib/man/EuropeanOptionImpliedVolatility.Rd | 3
RQuantLib-0.3.5/RQuantLib/man/FixedRateBond.Rd | 61 +++++++-
RQuantLib-0.3.5/RQuantLib/man/FloatingRateBond.Rd | 3
RQuantLib-0.3.5/RQuantLib/man/ImpliedVolatility.Rd | 10 -
RQuantLib-0.3.5/RQuantLib/man/Option.Rd | 11 -
RQuantLib-0.3.5/RQuantLib/man/ZeroCouponBond.Rd | 54 ++++++-
RQuantLib-0.3.5/RQuantLib/src/Makevars.win | 28 +--
RQuantLib-0.3.5/RQuantLib/src/bonds.cpp | 4
RQuantLib-0.3.5/RQuantLib/src/zero.cpp | 4
RQuantLib-0.3.5/RQuantLib/tests/RQuantlib.Rout.save | 13 -
37 files changed, 236 insertions(+), 94 deletions(-)
Title: Hierarchical Modal Clustering
Diff between Modalclust versions 0.1 dated 2010-11-13 and 0.2 dated 2010-11-30
Description: Perfroms Modal Clustering (MAC) including Hierarchical
Modal Clustering (HMAC) along with their parallel
implementation (PHMAC) over several processors. These
model-based non-parametric clustering techniques can extract
clusters in very high dimensions with arbitrary density shapes.
By default clustering is performed over several resolutions and
the results are summarized as a hierarchical tree. Associated
plot functions are also provided. There is a package vignette
that provides many examples.
Author: Surajit Ray and Yansong Cheng
Maintainer: Surajit Ray
DESCRIPTION | 21 ++++++++++++++-------
R/hmacpack.r | 2 ++
demo |only
inst/doc/Modalclust.pdf |binary
man/disc2d.Rd | 1 +
man/hard.HMAC.Rd | 4 ++--
man/pHMAC.Rd | 3 +++
man/plot.hmac.Rd | 4 ++--
man/soft.HMAC.Rd | 4 ++--
9 files changed, 26 insertions(+), 13 deletions(-)