Title: Mining Association Rules and Frequent Itemsets
Diff between arules versions 1.0-2 dated 2010-03-17 and 1.0-3 dated 2011-01-08
Description: Provides the infrastructure for representing, manipulating
and analyzing transaction data and patterns (frequent itemsets
and association rules). Also provides interfaces to C
implementations of the association mining algorithms Apriori
and Eclat by C. Borgelt.
Author: Michael Hahsler, Christian Buchta, Bettina Gruen and Kurt
Hornik
Maintainer: Michael Hahsler
arules-1.0-2/arules/man/SORT.Rd |only
arules-1.0-3/arules/DESCRIPTION | 12 -
arules-1.0-3/arules/NAMESPACE | 7
arules-1.0-3/arules/R/AllGenerics.R | 24 ++-
arules-1.0-3/arules/R/addComplement.R |only
arules-1.0-3/arules/R/aggregate.R |only
arules-1.0-3/arules/R/associations.R | 7
arules-1.0-3/arules/R/dissimilarity.R | 103 +++++++++++++-
arules-1.0-3/arules/R/inspect.R | 8 -
arules-1.0-3/arules/R/interestMeasures.R | 5
arules-1.0-3/arules/R/itemMatrix.R | 44 ++++--
arules-1.0-3/arules/R/parameter.R | 4
arules-1.0-3/arules/R/read_write.R | 24 ++-
arules-1.0-3/arules/R/sample.R | 4
arules-1.0-3/arules/R/tidLists.R | 2
arules-1.0-3/arules/R/transactions.R | 10 +
arules-1.0-3/arules/inst/doc/arules.Rnw | 162 +++++++++++++++--------
arules-1.0-3/arules/inst/doc/arules.pdf |binary
arules-1.0-3/arules/inst/doc/jss.bst |only
arules-1.0-3/arules/inst/doc/jss.cls |only
arules-1.0-3/arules/man/ASparameter-class.Rd | 2
arules-1.0-3/arules/man/Epub.Rd | 2
arules-1.0-3/arules/man/WRITE.Rd | 26 ++-
arules-1.0-3/arules/man/addComplement.Rd |only
arules-1.0-3/arules/man/aggregate.Rd |only
arules-1.0-3/arules/man/apriori.Rd | 2
arules-1.0-3/arules/man/crossTable.Rd | 4
arules-1.0-3/arules/man/dissimilarity.Rd | 59 ++++++--
arules-1.0-3/arules/man/interestMeasure.Rd | 11 +
arules-1.0-3/arules/man/is.closed.Rd | 2
arules-1.0-3/arules/man/is.superset.Rd | 2
arules-1.0-3/arules/man/itemMatrix-class.Rd | 6
arules-1.0-3/arules/man/itemsets-class.Rd | 2
arules-1.0-3/arules/man/merge.Rd |only
arules-1.0-3/arules/man/read.transactions.Rd | 2
arules-1.0-3/arules/man/ruleInduction.Rd | 2
arules-1.0-3/arules/man/rules-class.Rd | 2
arules-1.0-3/arules/man/sample.Rd | 3
arules-1.0-3/arules/man/sort.Rd |only
arules-1.0-3/arules/man/support.Rd | 2
arules-1.0-3/arules/man/transactions-class.Rd | 32 ++--
arules-1.0-3/arules/tests/associations.Rout.save | 19 ++
arules-1.0-3/arules/tests/extract.Rout.save | 19 ++
arules-1.0-3/arules/tests/interfaces.R | 2
arules-1.0-3/arules/tests/interfaces.Rout.save | 21 ++
arules-1.0-3/arules/tests/matrix.Rout.save | 19 ++
arules-1.0-3/arules/tests/measures.Rout.save | 19 ++
arules-1.0-3/arules/tests/sets.Rout.save | 19 ++
arules-1.0-3/arules/tests/transactions.Rout.save | 19 ++
49 files changed, 534 insertions(+), 180 deletions(-)
Title: Format R Code Automatically
Diff between formatR versions 0.1-6 dated 2011-01-06 and 0.1-7 dated 2011-01-08
Description: This package provides a function tidy.source() and
optionally a GUI (by gWidgets and prefers gWidgetsRGtk2) to
format R source code. Spaces and indent will be added to the
code automatically, and comments will be preserved under
certain conditions, so that R code will be more human-readable
and tidy.
Author: Yihui Xie
Maintainer: Yihui Xie
DESCRIPTION | 9 +
NAMESPACE | 2
R/formatR.R | 232 +++++++++++++++++++++++++++++++++--------------
inst |only
man/InLiNe_IdEnTiFiEr.Rd |only
man/formatR.Rd | 57 ++++++++---
man/tidy.source.Rd | 172 +++++++++++++++++++++++++---------
man/unmask.source.Rd |only
8 files changed, 341 insertions(+), 131 deletions(-)
Title: R/Weka interface
Diff between RWeka versions 0.4-5 dated 2010-12-14 and 0.4-6 dated 2011-01-08
Description: An R interface to Weka (Version 3.7.3). Weka is a
collection of machine learning algorithms for data mining tasks
written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Package RWeka contains the interface code, the
Weka jar is in a separate package RWekajars. For more
information on Weka see http://www.cs.waikato.ac.nz/~ml/weka/.
Author: Kurt Hornik, with contributions from Christian Buchta, Torsten
Hothorn, Alexandros Karatzoglou, David Meyer, and Achim Zeileis
Maintainer: Kurt Hornik
CHANGELOG | 7 +++++++
DESCRIPTION | 8 ++++----
R/readers.R | 2 ++
inst/doc/RWeka.pdf |binary
4 files changed, 13 insertions(+), 4 deletions(-)
Title: Use a network approach to visualize empirical data
Diff between qgraph versions 0.4.0 dated 2011-01-08 and 0.4.1 dated 2011-01-08
Description: The qgraph package can be used to visualize psychometric
data by using networks. (see URL). This version omits any SVG
support to facilitate 64bit users. 32bit users that want to
create SVG files should check the URL.
Author: Sacha Epskamp, Anglique O. J. Cramer, Lourens J. Waldorp,
Verena D. Schmittmann and Denny Borsboom
Maintainer: Sacha Epskamp
qgraph-0.4.0/qgraph/R/qgraph_svg.R |only
qgraph-0.4.0/qgraph/man/qgraph_svg.Rd |only
qgraph-0.4.1/qgraph/DESCRIPTION | 14 ++--
qgraph-0.4.1/qgraph/R/qgraph.R | 36 ++++++-----
qgraph-0.4.1/qgraph/R/qgraph_layout.R | 6 -
qgraph-0.4.1/qgraph/R/qgraph_loadings.R | 10 +--
qgraph-0.4.1/qgraph/man/qgraph.Rd | 15 ++--
qgraph-0.4.1/qgraph/man/qgraph.layout.fruchtermanreingold.Rd | 8 --
8 files changed, 46 insertions(+), 43 deletions(-)
Title: IPP Toolbox
Diff between ipptoolbox versions 1.0 dated 2008-11-07 and 1.1 dated 2011-01-08
Description: An R package for uncertainty quantification and
propagation in the framework of Dempster-Shafer Theory and
imprecise probabilities. This package was developed in the
context of a collaborative research project between EDF R&D
(http//rd.edf.com) and the University of Duisburg-Essen,
Information Logistics (http//www.uni-due.de/il).
Author: Philipp Limbourg
Maintainer: Philipp Limbourg
DESCRIPTION | 31 +++++++++++++++++++------------
R/dsadf.R | 2 +-
R/dsaggwidth.R | 2 +-
R/dsbel.R | 2 +-
R/dsbelpl.R | 2 +-
R/dsbelpltests.R | 2 +-
R/dsbound.R | 2 +-
R/dscdf.R | 2 +-
R/dsconf.R | 2 +-
R/dsdempstersrule.R | 2 +-
R/dsecdf.R | 2 +-
R/dsecdffit.R | 2 +-
R/dsenvelope.R | 2 +-
R/dsevalmc.R | 2 +-
R/dsexample.R | 2 +-
R/dsexpect.R | 2 +-
R/dsfcruesexample.R | 2 +-
R/dsintersect.R | 2 +-
R/dsksconf.R | 2 +-
R/dskstest.R | 2 +-
R/dslapconf.R | 2 +-
R/dsmeanvar.R | 2 +-
R/dsminmeanmax.R | 2 +-
R/dsminmodemax.R | 2 +-
R/dsmonotonous.R | 2 +-
R/dsmonotonous2.R | 2 +-
R/dsnorm.R | 2 +-
R/dsodf.R | 2 +-
R/dsopt.R | 2 +-
R/dspl.R | 2 +-
R/dsqqplot.R | 2 +-
R/dsred.R | 2 +-
R/dssaveintersect.R | 2 +-
R/dssensitivity.R | 2 +-
R/dsstruct.R | 2 +-
R/dssummary.R | 2 +-
R/dsvariance.R | 2 +-
R/dswavg.R | 2 +-
R/dswmix.R | 2 +-
R/dsxaveraging.R | 2 +-
R/dsxenvelope.R | 2 +-
ipptoolbox_1.0.tar.gz |only
man/basicfunctions.Rd | 9 +++++----
man/bpafromdata.Rd | 9 +++++----
man/bpafromdist.Rd | 7 ++++---
man/bpafromprops.Rd | 9 +++++----
man/plotting.Rd | 11 ++++++-----
man/propsens.Rd | 10 ++++++----
man/tests.Rd | 7 ++++---
49 files changed, 94 insertions(+), 79 deletions(-)
Title: R Server Pages
Diff between R.rsp versions 0.4.0 dated 2010-09-16 and 0.4.1 dated 2011-01-08
Description: An R Server Page (RSP) is a document that contains both
text in a format of choice (HTML, TeX, ...) as well as R source
code within special tags. An RSP file can be translated into a
so called R servlet, which is an R script that outputs the
final document when sourced. This way documents in any format
can be generated dynamically using R, e.g. automatic reports of
statistical analysis. Utilizing an internal cross-platform web
server, this package provides dynamic help pages in HTML. If
other packages provide RSP help pages, these are automatically
linked to in the RSP main menu.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 10 ++++++----
R/999.package.R | 3 +--
R/HttpDaemon.R | 14 +++++++++++++-
inst/NEWS | 6 ++++++
inst/rsp/admin/shutdown.rsp | 2 +-
inst/tcl/r-httpd.tcl | 1 +
man/FileRspResponse.Rd | 2 +-
man/HtmlRspLanguage.Rd | 2 +-
man/HttpDaemon.Rd | 10 +++++++++-
man/HttpDaemonRspResponse.Rd | 2 +-
man/HttpRequest.Rd | 2 +-
man/R.rsp-package.Rd | 3 +--
man/RspLanguage.Rd | 2 +-
man/RspPage.Rd | 2 +-
man/RspResponse.Rd | 2 +-
15 files changed, 45 insertions(+), 18 deletions(-)
Title: Selected ISO codes
Diff between ISOcodes versions 2010.08.12-1 dated 2010-08-12 and 2011.01.08 dated 2011-01-08
Description: ISO language, territory, currency, script and character
codes. Provides ISO 639 language codes, ISO 3166 territory
codes, ISO 4217 currency codes, ISO 15924 script codes, and the
ISO 8859 character codes as well as the UN M.49 area codes.
Author: Christian Buchta and Kurt Hornik
Maintainer: Kurt Hornik
DESCRIPTION | 6 +++---
data/ISO_15924.rda |binary
data/ISO_3166_1.rda |binary
data/ISO_3166_2.rda |binary
data/ISO_3166_3.rda |binary
data/ISO_4217.rda |binary
data/ISO_4217_Historic.rda |binary
data/UN_M.49_Countries.rda |binary
data/UN_M.49_Regions.rda |binary
9 files changed, 3 insertions(+), 3 deletions(-)
Title: U.S. ZIP Code database
Diff between zipcode versions 0.1 dated 2011-01-05 and 0.2 dated 2011-01-08
Description: This package contains the "CivicSpace US ZIP Code
Database" by Schuyler Erle, August 2004 as a data.frame.
Believed to contain over 98% of U.S. ZIP Codes as of 2004 The
source data is available in CSV from
\url{http://www.boutell.com/zipcodes/} and
\url{http://mappinghacks.com/data/} and has been released under
the Creative Commons Share-Alike license.
Author: Jeffrey Breen
Maintainer: Jeffrey Breen
DESCRIPTION | 10 ++++------
NEWS |only
R/code.R | 18 +++++++++++-------
data/zipcode.rda |binary
man/clean.zipcodes.Rd | 15 ++++++++-------
man/zipcode-package.Rd | 7 +++----
man/zipcode.rd | 14 +++++++++++++-
7 files changed, 39 insertions(+), 25 deletions(-)
Title: rcdd (Computational Geometry)
Diff between rcdd versions 1.1-3 dated 2009-07-18 and 1.1-4 dated 2011-01-08
Description: R interface to (some of) cddlib
(http://www.ifor.math.ethz.ch/~fukuda/cdd_home/cdd.html).
Converts back and forth between two representations of a convex
polytope: as solution of a set of linear equalities and
inequalities and as convex hull of set of points and rays. Also
does linear programming and redundant generator elimination
(for example, convex hull in n dimensions). All functions can
use exact infinite-precision rational arithmetic.
Author: Charles J. Geyer
Maintainer: Charles J. Geyer
CHANGES | 6
DESCRIPTION | 22
R/onAttach.R |only
configure | 2984 +++++++++++++++++++++++------------------------
inst/doc/design.pdf |binary
inst/doc/vinny.Rnw | 42
inst/doc/vinny.pdf |binary
inst/doc/vinny.tex | 55
man/ArithmeticGMP.Rd | 2
man/allfaces.Rd | 11
man/linearity.Rd | 11
man/lpcdd.Rd | 11
man/redundant.Rd | 13
man/scdd.Rd | 13
tests/allfaces.Rout.save | 8
tests/arith.Rout.save | 8
tests/bar-gmp.Rout.save | 13
tests/bar.Rout.save | 13
tests/bug.Rout.save | 8
tests/bug2.R | 23
tests/bug2.Rout.save | 37
tests/chull.Rout.save | 13
tests/chull2.Rout.save | 8
tests/convert.Rout.save | 13
tests/fred.Rout.save | 8
tests/lpcdd.R | 42
tests/lpcdd.Rout.save | 62
tests/oops.Rout.save | 8
tests/qmatmult.Rout.save | 8
tests/qux-gmp.Rout.save | 13
tests/qux.Rout.save | 13
tests/redund.R | 42
tests/redund.Rout.save | 53
tests/sammy.Rout.save | 13
tests/subset.Rout.save | 8
tests/zero.Rout.save | 8
36 files changed, 1900 insertions(+), 1692 deletions(-)
Title: geostatistical modelling, prediction and simulation
Diff between gstat versions 0.9-75 dated 2010-12-07 and 0.9-76 dated 2011-01-08
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator
(co)simulation; variogram and variogram map plotting utility
functions.
Author: Edzer Pebesma
Maintainer: Edzer Pebesma
DESCRIPTION | 8 ++++----
R/gstat.cv.R | 9 ++++++---
inst/doc/gstat.pdf |binary
src/utils.c | 5 +++++
src/version.h | 4 ++--
5 files changed, 17 insertions(+), 9 deletions(-)
Title: Flexible Mixture Modeling
Diff between flexmix versions 2.3-1 dated 2010-12-21 and 2.3-2 dated 2011-01-08
Description: FlexMix implements a general framework for finite mixtures
of regression models using the EM algorithm. FlexMix provides
the E-step and all data handling, while the M-step can be
supplied by the user to easily define new models. Existing
drivers implement mixtures of standard linear models,
generalized linear models and model-based clustering.
Author: Friedrich Leisch and Bettina Gruen
Maintainer: Bettina Gruen
DESCRIPTION | 8 ++++----
NEWS | 6 ++++++
R/flxdist.R | 2 +-
R/rflexmix.R | 2 +-
inst/NEWS | 6 ++++++
inst/doc/bootstrapping.pdf |binary
inst/doc/flexmix-intro.pdf |binary
inst/doc/mixture-regressions.pdf |binary
inst/doc/regression-examples.pdf |binary
9 files changed, 18 insertions(+), 6 deletions(-)
Title: Extension of data.frame for fast subset, fast merge and fast
grouping.
Diff between data.table versions 1.5 dated 2010-09-14 and 1.5.1 dated 2011-01-08
Description: Enhanced data.frame. Fast subset, grouping and merge in a
short and flexible syntax. i and j may be expressions of column
names directly, for faster development. Example: X[Y] is a
fast join for large data.
Author: Matthew Dowle with many contributions from Tom Short. See SVN
logs on R-Forge.
Maintainer: M Dowle and T Short
DESCRIPTION | 13
NEWS | 20 +
R/cedta.R | 12
R/testbug.R |only
inst/doc/datatable-faq.pdf | 667 +++++++++++++++++++----------------------
inst/doc/datatable-intro.pdf |binary
inst/doc/datatable-timings.pdf |binary
7 files changed, 358 insertions(+), 354 deletions(-)
Title: Code Analysis Tools for R
Diff between codetools versions 0.2-6 dated 2010-12-04 and 0.2-7 dated 2011-01-08
Description: Code analysis tools for R
Author: Luke Tierney
Maintainer: Luke Tierney
DESCRIPTION | 6 +++---
R/codetools.R | 9 ++++-----
2 files changed, 7 insertions(+), 8 deletions(-)
Title: Classification and Regression Training
Diff between caret versions 4.75 dated 2011-01-03 and 4.76 dated 2011-01-08
Description: Misc functions for training and plotting classification
and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Maintainer: Max Kuhn
DESCRIPTION | 8 +-
R/makeCubistFiles.R | 118 +++++++++++++++++++++-----------------------
R/probFunction.R | 3 -
inst/NEWS | 6 ++
inst/doc/caretMisc.pdf |binary
inst/doc/caretSelection.pdf |binary
inst/doc/caretTrain.pdf |binary
inst/doc/caretVarImp.pdf |binary
8 files changed, 69 insertions(+), 66 deletions(-)
Title: arulesViz - Visualizing Association Rules
Diff between arulesViz versions 0.1-0 dated 2010-12-17 and 0.1-1 dated 2011-01-08
Description: Various visualization techniques for sets of association
rules based on package arules.
Author: Michael Hahsler and Sudheer Chelluboina
Maintainer: Michael Hahsler
DESCRIPTION | 8 ++--
R/scatterplot.R | 11 ++++-
inst/doc/arules.bib | 2 -
inst/doc/arulesViz.Rnw | 97 +++++++++++++++++++++++++++++++++++--------------
inst/doc/arulesViz.bib | 4 +-
inst/doc/arulesViz.pdf |binary
inst/doc/jss.bst |only
inst/doc/jss.cls |only
man/plot.Rd | 3 +
9 files changed, 88 insertions(+), 37 deletions(-)
Title: Overlays on Google map tiles in R
Diff between RgoogleMaps versions 1.1.9.3 dated 2010-12-13 and 1.1.9.4 dated 2011-01-08
Description: This package serves two purposes: (i) Provide a
comfortable R interface to query the Google server for static
maps, and (ii) Use the map as a background image to overlay
plots within R. This requires proper coordinate scaling. NOTE:
To do anything but downloading static map tiles, RgoogleMaps
needs EITHER rgdal OR ReadImages OR rimage installed ! Such an
OR dependency is difficult to express in the Depends field, so
I moved those packages to suggested. rgdal is your package if
you prefer png file format and ReadImages or rimage if you
prefer jpg format. In the latter cases, you will also need the
libjpeg library installed.
Author: Markus Loecher, Sense Networks
Maintainer: "Markus Loecher, Sense Networks"
DESCRIPTION | 8 ++++----
R/GetMap.R | 33 ++++++++++++++++++---------------
man/GetMap.Rd | 27 ++++++++++++++++++++-------
man/RgoogleMaps-package.Rd | 4 ++--
4 files changed, 44 insertions(+), 28 deletions(-)
Title: Convert Rd to roxygen documentation and utilities to enhance
roxygen
Diff between Rd2roxygen versions 0.1-3 dated 2010-12-19 and 0.1-4 dated 2011-01-08
Description: Functions to convert Rd to roxygen documentation. It can
parse an Rd file to a list, create the roxygen documentation
and update the original R script (e.g. the one containing the
definition of the function) accordingly. This package also
provides utilities which can help developers build packages
using roxygen more easily.
Author: Hadley Wickham and Yihui Xie
Maintainer: Yihui Xie
DESCRIPTION | 8 +--
R/utils.R | 117 ++++++++++++++++++++++++++++++++++++----------
inst/doc/Rd2roxygen.bib | 4 -
inst/doc/Rd2roxygen.pdf |binary
man/Rd2roxygen-package.Rd | 1
man/create_roxygen.Rd | 1
man/parse_and_save.Rd | 1
man/reformat_code.Rd | 46 +++++++++++-------
man/rm_undocumented.Rd | 1
man/roxygen_and_build.Rd | 4 -
10 files changed, 133 insertions(+), 50 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Diff between RcppArmadillo versions 0.2.10 dated 2010-11-26 and 0.2.11 dated 2011-01-08
Description: R and Armadillo integration using Rcpp Armadillo is a
templated C++ linear algebra library (by Conrad Sanderson) that
aims towards a good balance between speed and ease of use.
Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions.
Various matrix decompositions are provided through optional
integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to
combine several operations into one, and to reduce (or
eliminate) the need for temporaries. This is accomplished
through recursive templates and template meta-programming.
This library is useful if C++ has been decided as the language of
choice (due to speed and/or integration capabilities), rather
than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 1.0.0). Thus users do not
need to install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++
integration.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Romain Francois, Dirk Eddelbuettel and Doug Bates
ChangeLog | 17
DESCRIPTION | 12
R/SHLIB.R |only
inst/NEWS | 13
inst/doc/Makefile | 5
inst/doc/RcppArmadillo-unitTests.pdf |binary
inst/doc/unitTests-results/RcppArmadillo-unitTests.html | 16
inst/doc/unitTests-results/RcppArmadillo-unitTests.txt | 34
inst/include/armadillo | 9
inst/include/armadillo_bits/Col_meat.hpp | 25
inst/include/armadillo_bits/Col_proto.hpp | 5
inst/include/armadillo_bits/Cube_meat.hpp | 54 +
inst/include/armadillo_bits/Cube_proto.hpp | 7
inst/include/armadillo_bits/Mat_meat.hpp | 469 ++++++++++++
inst/include/armadillo_bits/Mat_proto.hpp | 54 +
inst/include/armadillo_bits/Proxy.hpp | 63 +
inst/include/armadillo_bits/Row_meat.hpp | 25
inst/include/armadillo_bits/Row_proto.hpp | 3
inst/include/armadillo_bits/arma_version.hpp | 11
inst/include/armadillo_bits/auxlib_meat.hpp | 102 ++
inst/include/armadillo_bits/auxlib_proto.hpp | 13
inst/include/armadillo_bits/debug.hpp | 101 +-
inst/include/armadillo_bits/diskio_meat.hpp | 280 +++++++
inst/include/armadillo_bits/diskio_proto.hpp | 9
inst/include/armadillo_bits/field_meat.hpp | 23
inst/include/armadillo_bits/field_proto.hpp | 3
inst/include/armadillo_bits/fn_cumsum.hpp |only
inst/include/armadillo_bits/fn_dot.hpp | 66 +
inst/include/armadillo_bits/fn_elem.hpp |only
inst/include/armadillo_bits/fn_inv.hpp | 27
inst/include/armadillo_bits/fn_max.hpp | 17
inst/include/armadillo_bits/fn_mean.hpp | 17
inst/include/armadillo_bits/fn_median.hpp | 15
inst/include/armadillo_bits/fn_min.hpp | 21
inst/include/armadillo_bits/fn_misc.hpp | 604 ----------------
inst/include/armadillo_bits/fn_prod.hpp | 15
inst/include/armadillo_bits/fn_solve.hpp | 22
inst/include/armadillo_bits/fn_stddev.hpp | 15
inst/include/armadillo_bits/fn_sum.hpp | 25
inst/include/armadillo_bits/fn_trimat.hpp |only
inst/include/armadillo_bits/fn_var.hpp | 15
inst/include/armadillo_bits/forward_proto.hpp | 7
inst/include/armadillo_bits/glue_solve_meat.hpp | 32
inst/include/armadillo_bits/glue_solve_proto.hpp | 12
inst/include/armadillo_bits/lapack_proto.hpp | 103 ++
inst/include/armadillo_bits/op_cumsum_meat.hpp |only
inst/include/armadillo_bits/op_cumsum_proto.hpp |only
inst/include/armadillo_bits/op_dot_meat.hpp | 46 +
inst/include/armadillo_bits/op_dot_proto.hpp | 9
inst/include/armadillo_bits/op_find_meat.hpp | 59 -
inst/include/armadillo_bits/op_inv_meat.hpp | 13
inst/include/armadillo_bits/op_inv_proto.hpp | 14
inst/include/armadillo_bits/op_trimat_meat.hpp |only
inst/include/armadillo_bits/op_trimat_proto.hpp |only
inst/include/armadillo_bits/podarray_meat.hpp | 7
inst/include/armadillo_bits/span.hpp | 9
inst/include/armadillo_bits/subview_elem1_meat.hpp |only
inst/include/armadillo_bits/subview_elem1_proto.hpp |only
inst/include/armadillo_bits/subview_meat.hpp | 321 ++++++--
inst/include/armadillo_bits/subview_proto.hpp | 1
inst/include/armadillo_bits/typedef.hpp | 4
inst/include/armadillo_bits/unwrap.hpp | 135 +++
62 files changed, 2155 insertions(+), 829 deletions(-)
Title: Power and Sample size based on two one-sided t-tests (TOST) for
bioequivalence studies
Diff between PowerTOST versions 0.8-1 dated 2010-11-26 and 0.8-2 dated 2011-01-08
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies. See
function known.designs() for study designs covered. Moreover
the package contains functions for power and sample size based
on 'expected' power in case of uncertain (estimated)
variability. Added are functions for the power and sample size
for the ratio of two means with normally distributed data on
the original scale (based on Fieller's confidence ('fiducial')
interval).
Author: Detlew Labes
Maintainer: D. Labes
PowerTOST-0.8-1/PowerTOST/.project |only
PowerTOST-0.8-2/PowerTOST/DESCRIPTION | 8 -
PowerTOST-0.8-2/PowerTOST/NEWS | 5 +
PowerTOST-0.8-2/PowerTOST/R/CVpMethods.R |only
PowerTOST-0.8-2/PowerTOST/R/CVpooled.R |only
PowerTOST-0.8-2/PowerTOST/R/DesignHelpers.R | 19 ++--
PowerTOST-0.8-2/PowerTOST/R/OwensQ.R | 42 +++++-----
PowerTOST-0.8-2/PowerTOST/R/expSampleSize.R | 2
PowerTOST-0.8-2/PowerTOST/inst/doc/BE_power_sample_size_excerpt.pdf |binary
PowerTOST-0.8-2/PowerTOST/man/CVpooled.Rd |only
PowerTOST-0.8-2/PowerTOST/man/PowerTOST-internal.Rd | 2
PowerTOST-0.8-2/PowerTOST/man/PowerTOST-package.Rd | 4
12 files changed, 47 insertions(+), 35 deletions(-)
Title: Laplace's Demon: Software for Bayesian Inference
Diff between LaplacesDemon versions 11.01.05 dated 2011-01-06 and 11.01.07 dated 2011-01-08
Description: Laplace's Demon is MCMC-based software for Bayesian
inference, written entirely in R.
Author: Byron Hall
Maintainer: Byron Hall
CHANGELOG | 2
DESCRIPTION | 8 +--
R/LaplacesDemon.R | 124 ++++++++++++++---------------------------------
R/predict.demonoid.R | 8 ++-
man/LaplacesDemon.Rd | 65 +++++++++++++-----------
man/demonsnacks.Rd | 2
man/plot.demonoid.Rd | 29 ++++++++++
man/plot.demonoid.ppc.Rd | 16 +++++-
man/predict.demonoid.Rd | 3 -
9 files changed, 134 insertions(+), 123 deletions(-)
Title: Evaluating the genetic differentiation between populations based
on Gst and D values.
Diff between DEMEtics versions 0.8.1 dated 2010-08-16 and 0.8-2 dated 2011-01-08
Description: This package allows to calculate the fixation index Gst
(Nei, 1973) and the differentiation index D (Jost, 2008)
pairwise between or averaged over several populations.
P-values, stating the significance of differentiation, and 95
percent confidence intervals can be estimated using bootstrap
resamplings. In the case that more than two populations are
compared pairwise, the p-values are adjusted by bonferroni
correction and in several other ways due to the multiple
comparison from one data set.
Author: Alexander Jueterbock, Philipp Kraemer, Gabriele Gerlach and
Jana Deppermann
Maintainer: Alexander Jueterbock,
DEMEtics-0.8-2/DEMEtics/DESCRIPTION | 47 ++++----------
DEMEtics-0.8-2/DEMEtics/NAMESPACE | 2
DEMEtics-0.8-2/DEMEtics/R/Bootstrapping.CI.r |only
DEMEtics-0.8-2/DEMEtics/R/Bootstrapping.p.r |only
DEMEtics-0.8-2/DEMEtics/R/D.Jost.r |only
DEMEtics-0.8-2/DEMEtics/R/Gst.Nei.r |only
DEMEtics-0.8-2/DEMEtics/R/H.out.r | 63 +++----------------
DEMEtics-0.8-2/DEMEtics/R/calc.r |only
DEMEtics-0.8-2/DEMEtics/R/chosen.calculations.r |only
DEMEtics-0.8-2/DEMEtics/R/inputformat.r | 2
DEMEtics-0.8-2/DEMEtics/R/over.all.pops.r |only
DEMEtics-0.8-2/DEMEtics/R/pair.pops.r |only
DEMEtics-0.8-2/DEMEtics/inst |only
DEMEtics-0.8-2/DEMEtics/man/D.JostaGst.Nei.Rd |only
DEMEtics-0.8-2/DEMEtics/man/DEMEtics-package.Rd |only
DEMEtics-0.8-2/DEMEtics/man/Example.transformed.Rd | 14 ----
DEMEtics-0.8-2/DEMEtics/man/Example.untransformed.Rd | 6 -
DEMEtics-0.8.1/DEMEtics/R/Bootstrapping.Chao.r |only
DEMEtics-0.8.1/DEMEtics/R/Bootstrapping.D.r |only
DEMEtics-0.8.1/DEMEtics/R/Bootstrapping.Dest.r |only
DEMEtics-0.8.1/DEMEtics/R/Bootstrapping.Gst.est.r |only
DEMEtics-0.8.1/DEMEtics/R/Bootstrapping.Gst.r |only
DEMEtics-0.8.1/DEMEtics/R/D.calc.r |only
DEMEtics-0.8.1/DEMEtics/R/Dest.Chao.calc.r |only
DEMEtics-0.8.1/DEMEtics/R/Dest.Chao.r |only
DEMEtics-0.8.1/DEMEtics/R/Dest.calc.r |only
DEMEtics-0.8.1/DEMEtics/R/Gst.calc.r |only
DEMEtics-0.8.1/DEMEtics/R/Gst.est.calc.r |only
DEMEtics-0.8.1/DEMEtics/R/all.pops.D.r |only
DEMEtics-0.8.1/DEMEtics/R/all.pops.Dest.Chao.r |only
DEMEtics-0.8.1/DEMEtics/R/all.pops.Dest.r |only
DEMEtics-0.8.1/DEMEtics/R/all.pops.Gst.est.r |only
DEMEtics-0.8.1/DEMEtics/R/all.pops.Gst.r |only
DEMEtics-0.8.1/DEMEtics/R/pair.pops.D.r |only
DEMEtics-0.8.1/DEMEtics/R/pair.pops.Dest.Chao.r |only
DEMEtics-0.8.1/DEMEtics/R/pair.pops.Dest.r |only
DEMEtics-0.8.1/DEMEtics/R/pair.pops.Gst.est.r |only
DEMEtics-0.8.1/DEMEtics/R/pair.pops.Gst.r |only
DEMEtics-0.8.1/DEMEtics/man/Bootstrapping.Rd |only
DEMEtics-0.8.1/DEMEtics/man/D.G.calc.Rd |only
DEMEtics-0.8.1/DEMEtics/man/DEMEtics.Rd |only
DEMEtics-0.8.1/DEMEtics/man/Dest.Chao.Rd |only
DEMEtics-0.8.1/DEMEtics/man/Dest.Chao.calc.Rd |only
DEMEtics-0.8.1/DEMEtics/man/Dest.Rd |only
DEMEtics-0.8.1/DEMEtics/man/Gst.est.Rd |only
DEMEtics-0.8.1/DEMEtics/man/H.out.Rd |only
DEMEtics-0.8.1/DEMEtics/man/Hardy.Weinberg.Rd |only
DEMEtics-0.8.1/DEMEtics/man/Hj.Rd |only
DEMEtics-0.8.1/DEMEtics/man/Hs.Rd |only
DEMEtics-0.8.1/DEMEtics/man/Ht.Rd |only
DEMEtics-0.8.1/DEMEtics/man/all.pops.Rd |only
DEMEtics-0.8.1/DEMEtics/man/allelefreq.Rd |only
DEMEtics-0.8.1/DEMEtics/man/inputformat.Rd |only
DEMEtics-0.8.1/DEMEtics/man/p.val.Rd |only
DEMEtics-0.8.1/DEMEtics/man/pair.pops.Rd |only
55 files changed, 29 insertions(+), 105 deletions(-)