Title: Models for Data from Unmarked Animals
Diff between unmarked versions 0.8-9 dated 2010-12-23 and 0.9-0 dated 2011-01-24
Description: Unmarked fits hierarchical models of animal abundance and
occurrence to data collected using survey methods such as point
counts, site occupancy sampling, distance sampling, removal
sampling, and double observer sampling. Parameters governing
the state and observation processes can be modeled as functions
of covariates.
Author: Ian Fiske, Richard Chandler, Andy Royle
Maintainer: Richard Chandler
DESCRIPTION | 14 -
NAMESPACE | 9
R/distsamp.R | 87 ++++++--
R/getDesign.R | 323 ++++++++++++++++++++++++------
R/gmultmix.R | 2
R/occuRN.R | 32 +-
R/pcount.R | 2
R/pcountOpen.R |only
R/unmarkedFit.R | 406 ++++++++++++++++++++++++++++++--------
R/unmarkedFitList.R | 12 -
R/unmarkedFrame.R | 79 ++++++-
R/unmarkedLinComb.R | 3
R/utils.R | 185 +++++++++--------
inst/CITATION | 5
inst/doc/Rplots.pdf | 18 -
inst/doc/distsamp.pdf |binary
inst/doc/unmarked.pdf |binary
inst/unitTests/figs |only
inst/unitTests/runit.colext.R | 42 +++
inst/unitTests/runit.gmultmix.R | 10
inst/unitTests/runit.pcount.R | 16 +
inst/unitTests/runit.pcountOpen.R |only
inst/unitTests/runit.utils.R | 60 +++++
inst/unitTests/sim.colext.R |only
inst/unitTests/sim.distsamp.R | 67 ++++++
inst/unitTests/sim.pcount.R |only
inst/unitTests/sim.pcountOpen.r |only
man/colext.Rd | 52 ++++
man/distsamp.Rd | 13 -
man/extract-methods.Rd | 1
man/fitted-methods.Rd | 1
man/getP-methods.Rd | 1
man/gmultmix.Rd | 2
man/masspcru.Rd | 2
man/multinomPois.Rd | 67 +++---
man/occu.Rd | 46 +++-
man/occuRN.Rd | 52 +++-
man/parboot.Rd | 34 ++-
man/pcount.Rd | 67 ++++--
man/pcountOpen.Rd |only
man/simulate-methods.Rd | 1
man/unmarked-package.Rd | 16 -
man/unmarkedFit-class.Rd | 3
man/unmarkedFrame-class.Rd | 2
man/unmarkedFrame.Rd | 18 +
man/unmarkedFrameDS.Rd |only
man/unmarkedFrameMPois.Rd |only
man/unmarkedFrameOccu.Rd |only
man/unmarkedFramePCO.Rd |only
man/unmarkedFramePCount.Rd |only
man/unmarkedMultFrame.Rd | 48 ++--
src/Makevars | 4
src/Makevars.win |only
src/rowProds.cpp |only
src/rowProds.h |only
src/tranProbs.cpp |only
src/tranProbs.h |only
57 files changed, 1371 insertions(+), 431 deletions(-)
Title: Moment and Inverse Moment Bayes factors
Diff between mombf versions 1.0.4 dated 2009-07-24 and 1.1.1 dated 2011-01-24
Description: This package performs model selection based on non-local
priors, including MOM, eMOM and iMOM priors. Routines are
provided to compute Bayes factors, marginal densities and to
perform variable selection in regression setups. Routines to
evaluate prior densities, distribution functions, quantiles and
modes are included.
Author: David Rossell
Maintainer: David Rossell
mombf-1.0.4/mombf/ChangeLog |only
mombf-1.1.1/mombf/DESCRIPTION | 30 ++--
mombf-1.1.1/mombf/NAMESPACE | 43 -----
mombf-1.1.1/mombf/R/ClassDefinitions.r |only
mombf-1.1.1/mombf/R/dimom.r | 40 +++++
mombf-1.1.1/mombf/R/dmom.r | 35 ++++
mombf-1.1.1/mombf/R/margpimom.r |only
mombf-1.1.1/mombf/R/margpmom.r |only
mombf-1.1.1/mombf/R/modelSelection.r |only
mombf-1.1.1/mombf/R/pimom.r | 4
mombf-1.1.1/mombf/R/pmom.r | 4
mombf-1.1.1/mombf/R/priorp2g.r | 2
mombf-1.1.1/mombf/R/qimom.r | 6
mombf-1.1.1/mombf/R/qmom.r | 4
mombf-1.1.1/mombf/changeLog |only
mombf-1.1.1/mombf/inst/doc/auto |only
mombf-1.1.1/mombf/inst/doc/mombf.Rnw | 212 ++++++++++++++++++++---------
mombf-1.1.1/mombf/inst/doc/mombf.pdf |binary
mombf-1.1.1/mombf/inst/doc/references.bib | 9 +
mombf-1.1.1/mombf/man/dmom.Rd | 43 +++--
mombf-1.1.1/mombf/man/modelSelection.Rd |only
mombf-1.1.1/mombf/man/msPriorSpec-class.Rd |only
mombf-1.1.1/mombf/man/nlpMarginals.Rd |only
mombf-1.1.1/mombf/src |only
24 files changed, 291 insertions(+), 141 deletions(-)
Title: Flexible Mixture Modeling
Diff between flexmix versions 2.3-2 dated 2011-01-08 and 2.3-3 dated 2011-01-24
Description: FlexMix implements a general framework for finite mixtures
of regression models using the EM algorithm. FlexMix provides
the E-step and all data handling, while the M-step can be
supplied by the user to easily define new models. Existing
drivers implement mixtures of standard linear models,
generalized linear models and model-based clustering.
Author: Friedrich Leisch and Bettina Gruen
Maintainer: Bettina Gruen
DESCRIPTION | 8 ++++----
NEWS | 5 +++++
R/boot.R | 16 +++++++++++-----
R/rflexmix.R | 4 ++--
inst/NEWS | 5 +++++
inst/doc/bootstrapping.pdf |binary
inst/doc/flexmix-intro.pdf |binary
inst/doc/mixture-regressions.pdf |binary
inst/doc/regression-examples.pdf |binary
9 files changed, 27 insertions(+), 11 deletions(-)
Title: R Commander Plugin for (industrial) Design of Experiments
Diff between RcmdrPlugin.DoE versions 0.9-1 dated 2011-01-24 and 0.9-2 dated 2011-01-24
More information about RcmdrPlugin.DoE at CRAN
Description: WARNING: This package is currently in beta status! The
package provides a platform-independent GUI for design of
experiments. It is implemented as a plugin to the R-Commander,
which is a more general graphical user interface for statistics
in R based on tcl/tk. DoE functionality can be accessed through
the menu Design that is added to the R-Commander menus.
Author: Ulrike Groemping
Maintainer: Ulrike Groemping
DESCRIPTION | 8 ++++----
R/Menu.IAPlot.R | 2 +-
R/PlotMeansDoE.menu.R |only
inst/NEWS | 3 +++
inst/etc/menus.txt | 14 ++++++++------
man/Menu.Analyze.Rd | 27 +++++++++++++++------------
man/PlotMeansDoE.menu.Rd |only
7 files changed, 31 insertions(+), 23 deletions(-)
Permanent link
Title: Network Data for McFarland's SNA R labs
Diff between NetData versions 0.2 dated 2010-06-24 and 0.3 dated 2011-01-24
Description: This package contains all data needed for Dan McFarland's
SNA R labs.
Author: Mike Nowak
Maintainer: Solomon Messing
DESCRIPTION | 6 +++---
buildcmds | 2 ++
man/NetData.Rd | 26 ++++++++++++++------------
man/S641.Rd |only
man/ergm173.Rd |only
man/kracknets.Rd |only
man/m182.Rd |only
man/magact96-98.Rd |only
man/mrqap173.Rd |only
man/mrqap182.Rd |only
man/peerinfl.Rd |only
11 files changed, 19 insertions(+), 15 deletions(-)
Title: Generation, reconstruction, simulation and analysis of
synchronous, asynchronous, and probabilistic Boolean networks
Diff between BoolNet versions 1.42 dated 2010-06-16 and 1.43 dated 2011-01-24
Description: Provides methods to reconstruct and generate synchronous,
asynchronous, and probabilistic Boolean networks, and to
analyze and visualize attractors in Boolean networks
Author: Christoph Müssel, Martin Hopfensitz, Dao Zhou, Hans Kestler
Maintainer: Hans Kestler
DESCRIPTION | 11 ++++++-----
R/attractorsToLaTeX.R | 2 +-
R/getAttractors.R | 2 +-
R/plotAttractors.R | 2 +-
R/reconstructNetwork.R | 24 ++++++++++++++++++++----
inst/CITATION |only
inst/doc/BoolNet_package_vignette.pdf |binary
man/BoolNet-package.Rd | 6 +++---
man/reconstructNetwork.Rd | 7 ++++++-
src/boolean_network.c | 6 +++---
src/common.c | 2 +-
src/reconstruct_network.c | 17 +++++++++--------
12 files changed, 51 insertions(+), 28 deletions(-)
Title: Tests for outliers
Diff between outliers versions 0.13-3 dated 2010-07-30 and 0.14 dated 2011-01-24
Description: A collection of some tests commonly used for identifying
outliers.
Author: Lukasz Komsta
Maintainer: Lukasz Komsta
DESCRIPTION | 12 ++++++------
R/outlier.R | 10 +++++-----
R/scores.R | 2 +-
man/outlier.Rd | 2 +-
man/scores.Rd | 2 +-
5 files changed, 14 insertions(+), 14 deletions(-)
Title: Multinomial Processing Tree (MPT) Models
Diff between mpt versions 0.2-0 dated 2010-09-24 and 0.3-0 dated 2011-01-24
Description: Fitting and testing multinomial processing tree models, a
class of statistical models for categorical data with latent
parameters. These parameters are the link probabilities of a
tree-like graph and represent the cognitive processing steps
executed to arrive at observable response categories
(Batchelder & Riefer, 1999; Erdfelder et al., 2009; Riefer &
Batchelder, 1988).
Author: Florian Wickelmaier
Maintainer: Florian Wickelmaier
ChangeLog | 9 +++++
DESCRIPTION | 8 ++--
R/mpt.R | 92 +++++++++++++++++++++++++++++++++++++++++++++++++++++---
data/proact.R | 3 +
man/mpt.Rd | 15 +++++++--
man/proact.Rd | 15 ++++-----
man/retroact.Rd | 12 +++----
7 files changed, 130 insertions(+), 24 deletions(-)
Title: Moments, cumulants, skewness, kurtosis and related tests
Diff between moments versions 0.11 dated 2007-08-25 and 0.12 dated 2011-01-24
Description: Functions to calculate: moments, Pearson's kurtosis,
Geary's kurtosis and skewness; tests related to them
(Anscombe-Glynn, D'Agostino, Bonett-Seier).
Author: Lukasz Komsta
Maintainer: Lukasz Komsta
DESCRIPTION | 29 ++++++++++++++++-------------
man/all.cumulants.Rd | 2 +-
2 files changed, 17 insertions(+), 14 deletions(-)
Title: Statistics: What's the Difference?
Diff between diff versions 1.0 dated 2011-01-15 and 1.0.1 dated 2011-01-24
Description: R code to accompany the text book.
Author: Andrew Gelman
Maintainer: Daniel Lee
diff-1.0.1/diff/ChangeLog |only
diff-1.0.1/diff/DESCRIPTION | 6 +-
diff-1.0.1/diff/R/discrete.histogram.R | 65 ++++++++++++++++--------------
diff-1.0.1/diff/man/discrete.histogram.Rd | 6 +-
diff-1.0/diff/Rplots.pdf |only
5 files changed, 43 insertions(+), 34 deletions(-)
Title: Laplace's Demon: Software for Bayesian Inference
Diff between LaplacesDemon versions 11.01.18 dated 2011-01-19 and 11.01.23 dated 2011-01-24
Description: Laplace's Demon is MCMC-based software for Bayesian
inference, written entirely in R.
Author: Byron Hall
Maintainer: Byron Hall
LaplacesDemon-11.01.18/LaplacesDemon/inst/doc/LDlogo.jpg |only
LaplacesDemon-11.01.23/LaplacesDemon/CHANGELOG | 6
LaplacesDemon-11.01.23/LaplacesDemon/DESCRIPTION | 8
LaplacesDemon-11.01.23/LaplacesDemon/R/LaplacesDemon.R | 64 +
LaplacesDemon-11.01.23/LaplacesDemon/inst/doc/BayesianInference.Stex | 247 +++----
LaplacesDemon-11.01.23/LaplacesDemon/inst/doc/BayesianInference.pdf |binary
LaplacesDemon-11.01.23/LaplacesDemon/inst/doc/Examples.Stex | 343 ++++++++--
LaplacesDemon-11.01.23/LaplacesDemon/inst/doc/Examples.pdf |binary
LaplacesDemon-11.01.23/LaplacesDemon/inst/doc/LDlogo.png |only
LaplacesDemon-11.01.23/LaplacesDemon/inst/doc/LaplacesDemon.Stex | 155 ++--
LaplacesDemon-11.01.23/LaplacesDemon/inst/doc/LaplacesDemon.pdf |binary
LaplacesDemon-11.01.23/LaplacesDemon/inst/doc/References.bib | 18
LaplacesDemon-11.01.23/LaplacesDemon/man/LaplacesDemon.Rd | 15
13 files changed, 582 insertions(+), 274 deletions(-)
Title: R Commander Plugin for (industrial) Design of Experiments
Diff between RcmdrPlugin.DoE versions 0.9 dated 2010-11-03 and 0.9-1 dated 2011-01-24
More information about RcmdrPlugin.DoE at CRAN
Description: WARNING: This package is currently in beta status! The
package provides a platform-independent GUI for design of
experiments. It is implemented as a plugin to the R-Commander,
which is a more general graphical user interface for statistics
in R based on tcl/tk. DoE functionality can be accessed through
the menu Design that is added to the R-Commander menus.
Author: Ulrike Groemping
Maintainer: Ulrike Groemping
DESCRIPTION | 8 ++++----
R/Menu.cand.r | 51 +++++++++++++++++++++++++++++++++++++++++++++++++--
inst/NEWS | 11 ++++++++++-
inst/etc/menus.txt | 2 +-
man/Menu.Optimal.Rd | 6 +++---
man/Menus.Rd | 2 +-
6 files changed, 68 insertions(+), 12 deletions(-)
Permanent link