Title: Community Ecology Package
Diff between vegan versions 1.17-6 dated 2011-01-10 and 1.17-7 dated 2011-02-16
Description: Ordination methods, diversity analysis and other functions
for community and vegetation ecologists.
Author: Jari Oksanen, F. Guillaume Blanchet, Roeland Kindt, Pierre
Legendre, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, M.
Henry H. Stevens, Helene Wagner
Maintainer: Jari Oksanen
DESCRIPTION | 8 +-
R/anova.ccabyaxis.R | 27 +++++++--
R/anova.ccabyterm.R | 9 ++-
R/as.preston.R | 34 ++++++++---
R/capscale.R | 24 ++++++--
R/cca.formula.R | 1
R/eigenvals.R | 36 ++++++++++++
R/fitted.capscale.R | 11 ++-
R/kendall.post.R | 2
R/nestednodf.R | 3 -
R/nestedtemp.R | 8 +-
R/ordiParseFormula.R | 7 +-
R/ordiplot3d.R | 2
R/orditkplot.R | 8 +-
R/plot.cascadeKM.R | 6 --
R/plot.cca.R | 2
R/plot.specaccum.R | 23 ++++---
R/predict.rda.R | 10 ++-
R/prestondistr.R | 8 +-
R/prestonfit.R | 11 ++-
R/print.MOStest.R | 2
R/rda.formula.R | 1
R/rgl.renyiaccum.R | 2
R/showvarparts.R | 4 -
R/simulate.rda.R | 59 +++++++++++++++++++
R/specaccum.R | 2
data/BCI.rda |binary
data/dune.env.rda |binary
data/dune.rda |binary
data/mite.env.rda |binary
data/mite.pcnm.rda |binary
data/pyrifos.rda |binary
data/varechem.rda |binary
data/varespec.rda |binary
inst/ChangeLog | 31 ++++++++++
inst/NEWS | 24 ++++++++
inst/doc/FAQ-vegan.pdf |binary
inst/doc/decision-vegan.pdf |binary
inst/doc/decision-vegan.tex | 18 +++---
inst/doc/diversity-vegan.pdf |binary
inst/doc/diversity-vegan.tex | 70 +++++++++++------------
inst/doc/intro-vegan.pdf |binary
inst/doc/intro-vegan.tex | 49 ++++++++--------
man/anova.cca.Rd | 4 +
man/capscale.Rd | 7 ++
man/cca.object.Rd | 27 +++++++--
man/eigenvals.Rd | 9 ++-
man/fisherfit.Rd | 128 +++++++++++++++++++++++--------------------
man/simulate.rda.Rd | 30 ++++++----
man/specaccum.Rd | 12 ++--
50 files changed, 494 insertions(+), 225 deletions(-)
Title: Reads files generated by MALDI-TOF MS of Bruker Daltonics' *flex
series
Diff between readBrukerFlexData versions 1.0 dated 2011-02-15 and 1.0.1 dated 2011-02-16
More information about readBrukerFlexData at CRAN
Description: readBrukerFlexData supports direct file import of acqu and
fid files generated by MALDI-TOF mass spectrometer of Bruker
Daltonics' *flex series; successfully tested for Bruker
Daltonics' Autoflex MS
Author: Sebastian Gibb
Maintainer: Sebastian Gibb
DESCRIPTION | 15 ++++++++-------
NEWS | 4 ++++
R/readBrukerFlexData.R | 28 ++++++++++++++--------------
man/double2singlePrecision.Rd | 2 +-
man/hpc.Rd | 12 +++++-------
man/readBrukerFlexData.package.Rd | 8 ++++----
man/readBrukerFlexDir.Rd | 10 +++++-----
man/readBrukerFlexFile.Rd | 30 +++++++++++++++++-------------
8 files changed, 58 insertions(+), 51 deletions(-)
Permanent link
Title: Forecasting functions for time series
Diff between forecast versions 2.12 dated 2011-01-19 and 2.13 dated 2011-02-16
Description: Methods and tools for displaying and analysing univariate
time series forecasts including exponential smoothing via state
space models and automatic ARIMA modelling.
Author: Rob J Hyndman
Maintainer: Rob J Hyndman
ChangeLog | 9 ++++++++-
DESCRIPTION | 8 ++++----
NAMESPACE | 37 ++++++++++++++++++++-----------------
R/errors.R | 17 ++++++++++-------
R/forecast.R | 7 ++++++-
R/forecast2.R | 11 +++++++----
R/season.R | 35 +++++++++++++++++++++++++++++++++++
R/simulate.R | 14 ++++++++++++++
man/forecast.stl.Rd |only
9 files changed, 104 insertions(+), 34 deletions(-)
Title: Gaussian Mixture Modeling algorithms. Including the belief-based
mixture modeling.
Diff between bgmm versions 1.1 dated 2011-02-11 and 1.2 dated 2011-02-16
Description:
Author: Przemyslaw Biecek \& Ewa Szczurek
Maintainer: Przemyslaw Biecek
DESCRIPTION | 6 +++---
R/bgmm.r | 2 +-
R/get.simple.beliefs.r | 17 ++++++++++-------
3 files changed, 14 insertions(+), 11 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Diff between RcppArmadillo versions 0.2.11 dated 2011-01-08 and 0.2.12 dated 2011-02-16
Description: R and Armadillo integration using Rcpp Armadillo is a
templated C++ linear algebra library (by Conrad Sanderson) that
aims towards a good balance between speed and ease of use.
Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions.
Various matrix decompositions are provided through optional
integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to
combine several operations into one, and to reduce (or
eliminate) the need for temporaries. This is accomplished
through recursive templates and template meta-programming.
This library is useful if C++ has been decided as the language of
choice (due to speed and/or integration capabilities), rather
than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 1.1.20). Thus users do not
need to install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++
integration.
Armadillo is licensed under the GNU LGPL version 3 or later, while
RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is
license under GNU GPL version 2 or later, as is the rest of
Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Romain Francois, Dirk Eddelbuettel and Doug Bates
RcppArmadillo-0.2.11/RcppArmadillo/inst/include/armadillo_bits/syslib_proto.hpp |only
RcppArmadillo-0.2.12/RcppArmadillo/ChangeLog | 6
RcppArmadillo-0.2.12/RcppArmadillo/DESCRIPTION | 17
RcppArmadillo-0.2.12/RcppArmadillo/inst/NEWS | 12
RcppArmadillo-0.2.12/RcppArmadillo/inst/doc/RcppArmadillo-unitTests.pdf |binary
RcppArmadillo-0.2.12/RcppArmadillo/inst/doc/unitTests-results/RcppArmadillo-unitTests.html | 6
RcppArmadillo-0.2.12/RcppArmadillo/inst/doc/unitTests-results/RcppArmadillo-unitTests.txt | 30
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/README | 1
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo | 13
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/Base.hpp | 15
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/Col_meat.hpp | 14
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/Col_proto.hpp | 8
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/Cube_meat.hpp | 6
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/Mat_meat.hpp | 20
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/Mat_proto.hpp | 15
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/Row_meat.hpp | 14
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/Row_proto.hpp | 8
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/arma_config.hpp | 10
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp | 8
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/arrayops_meat.hpp |only
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/arrayops_proto.hpp | 448 +---------
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/auxlib_meat.hpp | 63 -
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/auxlib_proto.hpp | 10
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/compiler_setup.hpp | 8
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/config.hpp | 20
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/debug.hpp | 27
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/fn_conv_to.hpp | 60 -
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/fn_prod.hpp | 40
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/glue_solve_meat.hpp | 10
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/glue_solve_proto.hpp | 4
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/injector_meat.hpp | 6
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/op_dot_meat.hpp | 2
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/op_prod_meat.hpp | 29
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/op_reshape_meat.hpp | 8
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/op_trans_meat.hpp | 2
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/op_trimat_meat.hpp | 4
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/podarray_meat.hpp | 4
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/subview_cube_meat.hpp | 50 -
RcppArmadillo-0.2.12/RcppArmadillo/inst/include/armadillo_bits/subview_meat.hpp | 8
39 files changed, 339 insertions(+), 667 deletions(-)