Title: Graphical user interface for data mining in R
Diff between rattle versions 2.6.3 dated 2011-02-14 and 2.6.4 dated 2011-02-19
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab.
Thus they are available to the user as a script file or as an
aide for the user to learn R or to copy-and-paste directly into
R itself. Rattle also exports a number of utility functions and
the graphical user interface, invoked as rattle(), does not
need to be run to deploy these.
Author: Graham Williams
Maintainer: Graham Williams
DESCRIPTION | 8 +++----
R/evaluate.R | 39 ++++++++++++++++++++-----------------
R/explore.R | 16 +++++++++------
R/rattle.R | 12 ++++++-----
data/weatherAUS.RData |binary
inst/ChangeLog | 13 ++++++++++++
inst/doc/rattle.pdf |binary
inst/po/de/LC_MESSAGES/R-rattle.mo |binary
inst/po/es/LC_MESSAGES/R-rattle.mo |binary
inst/po/fr/LC_MESSAGES/R-rattle.mo |binary
inst/po/ja/LC_MESSAGES/R-rattle.mo |binary
11 files changed, 56 insertions(+), 32 deletions(-)
Title: Numerical Integration for Bayesian Inference
Diff between bayespack versions 1.0-1 dated 2011-02-17 and 1.0-2 dated 2011-02-19
Description: The bayespack package provides an R interface to the
Fortran BAYESPACK integration routines written by Alan Genz.
Given an unnormalized posterior distribution, the BAYESPACK
routines approximate the normalization constant and the mean
and covariance of the posterior. Posterior means of additional
functions of the parameters can be calculated as well.
Author: Alan Genz (BAYESPACK Fortran source code) and Bjoern Bornkamp
(R interface and minor adaptions in Fortran source code)
Maintainer: Bjoern Bornkamp
ChangeLog |only
DESCRIPTION | 8 ++++----
R/tools.R | 2 +-
man/bayespack-package.Rd | 4 ++--
4 files changed, 7 insertions(+), 7 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Diff between RcppArmadillo versions 0.2.12 dated 2011-02-16 and 0.2.13 dated 2011-02-19
Description: R and Armadillo integration using Rcpp Armadillo is a
templated C++ linear algebra library (by Conrad Sanderson) that
aims towards a good balance between speed and ease of use.
Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions.
Various matrix decompositions are provided through optional
integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to
combine several operations into one, and to reduce (or
eliminate) the need for temporaries. This is accomplished
through recursive templates and template meta-programming.
This library is useful if C++ has been decided as the language of
choice (due to speed and/or integration capabilities), rather
than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 1.1.4). Thus users do not
need to install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++
integration.
Armadillo is licensed under the GNU LGPL version 3 or later, while
RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is
licenses under the GNU GPL version 2 or later, as is the rest
of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Romain Francois, Dirk Eddelbuettel and Doug Bates
ChangeLog | 6
DESCRIPTION | 14
inst/NEWS | 8
inst/doc/RcppArmadillo-unitTests.pdf |binary
inst/doc/unitTests-results/RcppArmadillo-unitTests.html | 6
inst/doc/unitTests-results/RcppArmadillo-unitTests.txt | 36
inst/include/armadillo_bits/Col_meat.hpp | 64 +
inst/include/armadillo_bits/Col_proto.hpp | 3
inst/include/armadillo_bits/Cube_meat.hpp | 124 ++
inst/include/armadillo_bits/Cube_proto.hpp | 7
inst/include/armadillo_bits/Mat_meat.hpp | 696 +++++++++++---
inst/include/armadillo_bits/Mat_proto.hpp | 36
inst/include/armadillo_bits/Row_meat.hpp | 62 +
inst/include/armadillo_bits/Row_proto.hpp | 3
inst/include/armadillo_bits/arma_version.hpp | 4
inst/include/armadillo_bits/arrayops_meat.hpp | 76 -
inst/include/armadillo_bits/debug.hpp | 254 ++++-
inst/include/armadillo_bits/field_meat.hpp | 44
inst/include/armadillo_bits/field_proto.hpp | 2
inst/include/armadillo_bits/fn_accu.hpp | 15
inst/include/armadillo_bits/fn_prod.hpp | 10
inst/include/armadillo_bits/forward_proto.hpp | 8
inst/include/armadillo_bits/injector_meat.hpp | 70 +
inst/include/armadillo_bits/injector_proto.hpp | 4
inst/include/armadillo_bits/op_sort_meat.hpp | 242 ++---
inst/include/armadillo_bits/op_sort_proto.hpp | 15
inst/include/armadillo_bits/span.hpp | 72 +
inst/include/armadillo_bits/subview_cube_meat.hpp | 759 +++++++++++++---
inst/include/armadillo_bits/subview_cube_proto.hpp | 19
inst/include/armadillo_bits/subview_field_meat.hpp | 83 +
inst/include/armadillo_bits/subview_field_proto.hpp | 11
inst/include/armadillo_bits/subview_meat.hpp | 118 +-
inst/include/armadillo_bits/subview_proto.hpp | 21
33 files changed, 2113 insertions(+), 779 deletions(-)
Title: Convenient Tools for Working with Oracle Databases
Diff between ROracleUI versions 1.3-0 dated 2010-11-19 and 1.3-1 dated 2011-02-19
Description: Easy-to-use functions to explore Oracle databases and
import data into R. User interface for the ROracle package.
Author: Arni Magnusson
Maintainer: Arni Magnusson
DESCRIPTION | 8 ++++----
NEWS | 8 ++++++++
R/sql.R | 6 ++----
3 files changed, 14 insertions(+), 8 deletions(-)
Title: Bayesian Model Search and Multilevel Inference for SNP
Association Studies
Diff between MISA versions 2.11.1-1.0 dated 2011-02-17 and 2.11.1-1.0.1 dated 2011-02-19
Description: The functions in this package focus on intermediate
throughput case-control association studies, where the outcome
of interest is often a binary disease state and where the
genetic markers have been chosen to capture variation in a set
of related genes, such as those involved in a specific
biochemical pathway. Given this data, we are interested in
addressing two questions: "To what extent does the data support
an overall association between the pathway and outcome of
interest?" and "Which markers or genes are most likely to be
driving this association?" To address both of these
questions,this package performs a Bayesian model search
technique that utilizes Evolutionary Monte Carlo and searches
over models including main effects of all genetic markers and
marker-specific genetic effects in a computationally efficient
manner. The package incorporates functions that perform a
marginal screen on the genetic markers, summarize the output of
the model search algorithm, including image plots of the models
with the highest posterior probability, marginal summaries of
SNP and gene inclusion probabilities and Bayes Factors, and
global summaries of the posterior probability and Bayes Factor
giving evidence of an association in the set of SNPs of
interest.
Author: Melanie Wilson
Maintainer: Gary Lipton
ChangeLog | 7 +++++--
DESCRIPTION | 6 +++---
inst/doc/MISA.pdf |binary
src/Makevars | 2 +-
src/Makevars.win | 2 +-
src/ZS.approx.full.np.c | 3 +--
src/ZS.approx.null.np.c | 1 +
src/bayesglm.c | 2 +-
src/family.c | 18 +++++++++++-------
src/hg.approx.null.np.c | 1 +
src/mconf.h | 4 ++++
src/sampling.h | 5 ++++-
12 files changed, 33 insertions(+), 18 deletions(-)
Title: Bayesian Association Model for Genomic Data with Missing
Covariates
Diff between BAMD versions 3.3.1 dated 2010-04-25 and 3.4 dated 2011-02-19
Description: This package fits a linear mixed model where the
covariates for the random effects have missing values.
Author: Gopal, V. and Li, Z. and Casella, G.
Maintainer: Gopal, V.
DESCRIPTION | 8 ++++----
NAMESPACE | 2 +-
R/imputedGenotypes.R |only
README |only
man/imputedGenotypes.Rd |only
5 files changed, 5 insertions(+), 5 deletions(-)