Title: Nested Archimedean Copulas
Diff between nacopula versions 0.4-3 dated 2010-08-18 and 0.4-4 dated 2011-03-04
Description: An R package for nested Archimedean copulas, providing a
procedure for computing function values, characteristics such
as Kendall's tau and tail dependence coefficients, as well as
sampling algorithms for generating random variates.
Author: Marius Hofert
Maintainer: Martin Maechler
nacopula-0.4-3/nacopula/inst/doc/jsslogo.jpg |only
nacopula-0.4-3/nacopula/inst/doc/mh-biblio.bib |only
nacopula-0.4-3/nacopula/inst/doc/nacopula.Rnw |only
nacopula-0.4-3/nacopula/inst/doc/nacopula.aux |only
nacopula-0.4-3/nacopula/inst/doc/nacopula.bbl |only
nacopula-0.4-3/nacopula/inst/doc/nacopula.pdf |only
nacopula-0.4-3/nacopula/inst/doc/nacopula.tex |only
nacopula-0.4-3/nacopula/src/misc |only
nacopula-0.4-4/nacopula/DESCRIPTION | 14 +++++++-------
nacopula-0.4-4/nacopula/inst/CITATION |only
nacopula-0.4-4/nacopula/inst/doc/Makefile | 22 ++++++++++++----------
nacopula-0.4-4/nacopula/inst/doc/nacopula-pkg.Rnw |only
nacopula-0.4-4/nacopula/inst/doc/nacopula-pkg.pdf |only
nacopula-0.4-4/nacopula/inst/doc/nacopula.bib |only
nacopula-0.4-4/nacopula/man/copFamilies.Rd | 5 +++++
15 files changed, 24 insertions(+), 17 deletions(-)
Title: An R client for the OGC Sensor Observation Service
Diff between sos4R versions 0.1-13 dated 2011-03-03 and 0.1-15 dated 2011-03-04
Description: sos4R is a client for Sensor Observation Services (SOS) as
specified by the Open Geospatial Consortium (OGC). It allows
users to retrieve metadata from SOS web services and to
interactively create requests for observation data based on the
available sensors, phenomena, observations, offerings etc.
Author: Daniel Nuest
Maintainer: Daniel Nuest
DESCRIPTION | 12
R/SML-methods-coercion.R | 4
R/SML-methods-util.R | 79 +
R/SOS-methods-accessor.R |only
R/SOS-methods-parsing.R | 2
R/SOS-methods-util.R | 881 ---------------
R/SOS-methods.R | 6
R/SWE-methods-parsing.R | 4
demo/airquality.R | 98 +
demo/austria.R | 82 +
demo/ioos.R | 188 +--
demo/oceanwatch.R | 24
demo/weathersos.R | 23
inst/CHANGES | 19
inst/doc/Rplots.pdf |only
inst/doc/sos4R.Rnw | 67 -
inst/doc/sos4R.pdf |binary
man/SML.Rd | 12
man/SOS.Rd | 2
man/sos4R-package.Rd | 6
sandbox/loadSources.R | 1
sos4R-Ex.R | 2644 +++++++++++++++++++++++------------------------
22 files changed, 1760 insertions(+), 2394 deletions(-)
Title: Collection of methods to detect dichotomous differential item
functioning (DIF) in psychometrics
Diff between difR versions 3.3 dated 2010-10-23 and 4.0 dated 2011-03-04
Description: The difR package contains several traditional methods to
detect DIF in dichotomously scored items. Both uniform and
non-uniform DIF effects can be detected, with methods relying
upon item response models or not. Some methods deal with more
than one focal group.
Author: David Magis (U Liege), Sebastien Beland (UQAM) and Gilles
Raiche (UQAM)
Maintainer: David Magis
difR-3.3/difR/R/mantelHaenszel.r |only
difR-4.0/difR/DESCRIPTION | 8
difR-4.0/difR/NEWS | 112 ++++++++-
difR-4.0/difR/R/Logistik.r | 2
difR-4.0/difR/R/LordChi2.r | 4
difR-4.0/difR/R/breslowDay.r | 2
difR-4.0/difR/R/dichoDif.r | 220 +++++++++++------
difR-4.0/difR/R/difGenLogistic.R | 15 -
difR-4.0/difR/R/difGenLord.r | 20 +
difR-4.0/difR/R/difLogistic.r | 407 +++++++++++++++++----------------
difR-4.0/difR/R/difLord.r | 53 +++-
difR-4.0/difR/R/difRaju.r | 48 +++
difR-4.0/difR/R/difStd.r | 20 -
difR-4.0/difR/R/difTID.r |only
difR-4.0/difR/R/genDichoDif.R | 29 +-
difR-4.0/difR/R/genLogistik.R | 2
difR-4.0/difR/R/genMantelHaenszel.r | 2
difR-4.0/difR/R/itemPar1PL.r | 73 +++--
difR-4.0/difR/R/itemParEst.r | 4
difR-4.0/difR/R/mantelHaenszel.R |only
difR-4.0/difR/R/selectDif.r | 10
difR-4.0/difR/R/selectGenDif.R | 4
difR-4.0/difR/R/stdPDIF.r | 2
difR-4.0/difR/R/trItemDiff.R |only
difR-4.0/difR/TODO | 15 +
difR-4.0/difR/inst/CITATION | 4
difR-4.0/difR/inst/doc/Rd2.pdf |binary
difR-4.0/difR/man/LRT.Rd | 4
difR-4.0/difR/man/Logistik.rd | 22 -
difR-4.0/difR/man/LordChi2.rd | 8
difR-4.0/difR/man/RajuZ.rd | 2
difR-4.0/difR/man/breslowDay.rd | 12
difR-4.0/difR/man/contrastMatrix.rd | 12
difR-4.0/difR/man/dichoDif.rd | 127 ++++++----
difR-4.0/difR/man/difBD.rd | 67 +++--
difR-4.0/difR/man/difGMH.rd | 53 ++--
difR-4.0/difR/man/difGenLogistic.rd | 107 +++++---
difR-4.0/difR/man/difGenLord.rd | 55 ++--
difR-4.0/difR/man/difLRT.rd | 18 -
difR-4.0/difR/man/difLogistic.rd | 112 +++++----
difR-4.0/difR/man/difLord.rd | 61 +++-
difR-4.0/difR/man/difMH.rd | 82 +++---
difR-4.0/difR/man/difR-package.Rd | 7
difR-4.0/difR/man/difRaju.rd | 46 ++-
difR-4.0/difR/man/difStd.rd | 76 +++---
difR-4.0/difR/man/difTID.Rd |only
difR-4.0/difR/man/genDichoDif.rd | 65 +++--
difR-4.0/difR/man/genLogistik.rd | 22 -
difR-4.0/difR/man/genLordChi2.rd | 12
difR-4.0/difR/man/genMantelHaenszel.rd | 13 -
difR-4.0/difR/man/itemPar1PL.rd | 22 +
difR-4.0/difR/man/itemPar2PL.rd | 13 -
difR-4.0/difR/man/itemPar3PL.rd | 11
difR-4.0/difR/man/itemPar3PLconst.rd | 11
difR-4.0/difR/man/itemParEst.rd | 24 +
difR-4.0/difR/man/itemRescale.rd | 12
difR-4.0/difR/man/mantelHaenszel.rd | 36 +-
difR-4.0/difR/man/selectDif.rd | 86 ++++--
difR-4.0/difR/man/selectGenDif.rd | 44 ++-
difR-4.0/difR/man/stdPDIF.rd | 42 +--
difR-4.0/difR/man/subtestLogistic.rd | 12
difR-4.0/difR/man/trItemDiff.Rd |only
difR-4.0/difR/man/verbal.rd | 6
63 files changed, 1466 insertions(+), 892 deletions(-)
Title: Dynamical Deterministic Effects Propagation Networks: Infer
signalling networks for timecourse RPPA data.
Diff between ddepn versions 1.5 dated 2010-12-12 and 1.6 dated 2011-03-04
Description: Given a matrix of reverse-phase-protein-array timecourse
data, containing one or more experimental measurements for the
signalling patterns among proteins in cells, the package
attempts to model the time-dependent propagation of active and
passive states depending on a network. The most likely network
structure given the data is reconstructed.
Author: Christian Bender
Maintainer: Christian Bender
DESCRIPTION | 8 ++++----
NAMESPACE | 2 +-
R/ddepn.R | 9 ++++++---
R/internal.functions.R | 5 ++++-
R/mcmc_accept.R | 6 +++---
R/mcmc_ddepn.R | 19 +++++++++----------
R/mcmc_move.R | 2 +-
R/netga.R | 13 ++++++-------
R/perform.hmmsearch.R | 16 ++++++++--------
R/posterior.R | 2 +-
R/prior.R | 7 ++++++-
R/samplephi.R | 6 +++---
data/hcc1954.RData |binary
data/hcc1954raw.RData |binary
data/kegggraphs.RData |binary
inst/doc/ddepn.pdf |binary
man/ddepn-package.Rd | 14 +++++++++++++-
man/ddepn.Rd | 16 +++++++++-------
man/posterior.Rd | 6 ++++--
man/prior.Rd | 11 +++++------
20 files changed, 83 insertions(+), 59 deletions(-)
Title: Overlays on Google map tiles in R
Diff between RgoogleMaps versions 1.1.9.4 dated 2011-01-08 and 1.1.9.5 dated 2011-03-04
Description: This package serves two purposes: (i) Provide a
comfortable R interface to query the Google server for static
maps, and (ii) Use the map as a background image to overlay
plots within R. This requires proper coordinate scaling. NOTE:
To do anything but downloading static map tiles, RgoogleMaps
needs EITHER rgdal OR ReadImages OR rimage installed ! Such an
OR dependency is difficult to express in the Depends field, so
I moved those packages to suggested. rgdal is your package if
you prefer png file format and ReadImages or rimage if you
prefer jpg format. In the latter cases, you will also need the
libjpeg library installed.
Author: Markus Loecher, Sense Networks
Maintainer: "Markus Loecher, Sense Networks"
DESCRIPTION | 8 ++++----
R/GetMap.R | 19 ++++++++++---------
man/GetMap.Rd | 11 ++++++-----
man/RgoogleMaps-package.Rd | 4 ++--
4 files changed, 22 insertions(+), 20 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Diff between RcppArmadillo versions 0.2.14 dated 2011-03-04 and 0.2.15 dated 2011-03-04
Description: R and Armadillo integration using Rcpp Armadillo is a
templated C++ linear algebra library (by Conrad Sanderson) that
aims towards a good balance between speed and ease of use.
Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions.
Various matrix decompositions are provided through optional
integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to
combine several operations into one, and to reduce (or
eliminate) the need for temporaries. This is accomplished
through recursive templates and template meta-programming.
This library is useful if C++ has been decided as the language of
choice (due to speed and/or integration capabilities), rather
than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 1.1.4). Thus users do not
need to install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++
integration.
Armadillo is licensed under the GNU LGPL version 3 or later, while
RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is
licenses under the GNU GPL version 2 or later, as is the rest
of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Romain Francois, Dirk Eddelbuettel and Doug Bates
ChangeLog | 14 -
DESCRIPTION | 8
inst/NEWS | 10
inst/doc/RcppArmadillo-unitTests.pdf |binary
inst/doc/unitTests-results/RcppArmadillo-unitTests.html | 10
inst/doc/unitTests-results/RcppArmadillo-unitTests.txt | 39 +-
inst/include/armadillo_bits/Col_meat.hpp | 51 +++
inst/include/armadillo_bits/Col_proto.hpp | 3
inst/include/armadillo_bits/Cube_meat.hpp | 52 +++
inst/include/armadillo_bits/Cube_proto.hpp | 7
inst/include/armadillo_bits/Mat_meat.hpp | 51 +++
inst/include/armadillo_bits/Mat_proto.hpp | 12
inst/include/armadillo_bits/Row_meat.hpp | 51 +++
inst/include/armadillo_bits/Row_proto.hpp | 3
inst/include/armadillo_bits/arma_version.hpp | 6
inst/include/armadillo_bits/config.hpp | 9
inst/include/armadillo_bits/field_meat.hpp | 220 ++++++++++++++--
inst/include/armadillo_bits/field_proto.hpp | 20 +
inst/unitTests/runit.RcppArmadillo.R | 16 +
19 files changed, 521 insertions(+), 61 deletions(-)
Title: L1 (lasso) and L2 (ridge) penalized estimation in GLMs and in
the Cox model
Diff between penalized versions 0.9-34 dated 2011-02-04 and 0.9-35 dated 2011-03-04
Description: A package for fitting possibly high dimensional penalized
regression models. The penalty structure can be any combination
of an L1 penalty (lasso), an L2 penalty (ridge) and a
positivity constraint on the regression coefficients. The
supported regression models are linear, logistic and poisson
regression and the Cox Proportional Hazards model.
Cross-validation routines allow optimization of the tuning
parameters.
Author: Jelle Goeman
Maintainer: Jelle Goeman
penalized-0.9-34/penalized/inst/doc/Rplots.pdf |only
penalized-0.9-34/penalized/inst/doc/Rplots.ps |only
penalized-0.9-34/penalized/inst/doc/penalized.R |only
penalized-0.9-35/penalized/DESCRIPTION | 8 ++++----
penalized-0.9-35/penalized/R/breslow.R | 2 +-
penalized-0.9-35/penalized/R/core.R | 4 ++--
penalized-0.9-35/penalized/R/cox.R | 2 +-
penalized-0.9-35/penalized/R/cvl.R | 10 ++++++++--
penalized-0.9-35/penalized/R/penalized.R | 4 ++--
penalized-0.9-35/penalized/changelog.txt | 6 ++++++
penalized-0.9-35/penalized/inst/doc/penalized.Rnw | 5 +++--
penalized-0.9-35/penalized/inst/doc/penalized.pdf |binary
penalized-0.9-35/penalized/man/cvl.Rd | 13 ++++++++-----
penalized-0.9-35/penalized/man/penalized.Rd | 2 ++
14 files changed, 37 insertions(+), 19 deletions(-)
Title: Multivariate Imputation by Chained Equations
Diff between mice versions 2.5 dated 2011-01-06 and 2.6 dated 2011-03-04
Description: Multiple Imputation using Fully Conditional Specification
Author: Stef van Buuren
Maintainer: Stef van Buuren
DESCRIPTION | 10 -
NAMESPACE | 20 +-
R/mice.R | 433 +++++++++++++++++++++++++-------------------
R/trellis.r |only
R/zzz.R | 1
inst/NEWS | 16 +
inst/doc/.Rhistory | 56 +++++
inst/doc/JSScode.r | 102 ++++------
man/mdc.Rd |only
man/mice-internal.Rd | 33 ++-
man/mice.Rd | 8
man/mice.impute.2l.norm.rd | 8
man/mice.impute.lda.Rd | 7
man/mice.impute.logreg.Rd | 5
man/mice.impute.mean.Rd | 4
man/mice.impute.norm.Rd | 5
man/mice.impute.norm.nob.rd | 3
man/mice.impute.pmm.Rd | 5
man/mice.impute.polyreg.Rd | 12 -
man/mice.impute.sample.Rd | 6
man/mice.mids.Rd | 9
man/pool.Rd | 7
man/trellis.Rd |only
23 files changed, 465 insertions(+), 285 deletions(-)
Title: Statistical Estimation of Game-Theoretic Models
Diff between games versions 0.6-0 dated 2010-12-09 and 1.0-0 dated 2011-03-04
Description: Provides estimation and analysis functions for strategic
statistical models.
Author: Curtis S. Signorino and Brenton Kenkel
Maintainer: Brenton Kenkel
DESCRIPTION | 12
NAMESPACE | 10
NEWS | 75 +++
R/doc.r | 95 +++-
R/egame12.r | 234 +++++-----
R/egame122.r | 151 ++++--
R/egame123.r | 568 +++++++++++++++++++++++++
R/games.r | 1028 ++--------------------------------------------
R/helpers.r | 148 +++++-
R/latexTable.r |only
R/makeFormulas.r |only
R/nonnest.r |only
R/predProbs.r |only
R/profile.r |only
R/ultimatum.r | 206 ++++++---
data/data_123.rda |only
data/leblang2003.rda |only
man/LW.Rd | 6
man/Mode.Rd | 12
man/data_122.Rd | 3
man/data_123.Rd |only
man/egame12.Rd | 68 +--
man/egame122.Rd | 47 +-
man/egame123.Rd |only
man/games-package.Rd | 5
man/latexTable.Rd | 6
man/leblang2003.Rd |only
man/makeFormulas.Rd |only
man/plot.profile.game.Rd | 8
man/predProbs.Rd | 9
man/predict.game.Rd | 14
man/print.summary.game.Rd | 1
man/profile.game.Rd | 8
man/ultimatum.Rd | 41 -
man/vuong.Rd |only
man/war1800.Rd | 10
36 files changed, 1426 insertions(+), 1339 deletions(-)
Title: Stochastic Frontier Analysis
Diff between frontier versions 0.997-0 dated 2011-01-03 and 0.997-2 dated 2011-03-04
Description: Maximum Likelihood Estimation of Stochastic Frontier
Production and Cost Functions. Two specifications are
available: the error components specification with time-varying
efficiencies (Battese and Coelli, 1992) and a model
specification in which the firm effects are directly influenced
by a number of variables (Battese and Coelli, 1995).
Author: Tim Coelli, Arne Henningsen
Maintainer: Arne Henningsen
DESCRIPTION | 10
NEWS | 8
R/efficiencies.frontier.R | 21
man/efficiencies.frontier.Rd | 47 +
src/front41.f | 1362 +++++++++++++++++++++----------------------
5 files changed, 752 insertions(+), 696 deletions(-)
Title: Forecasting functions for time series
Diff between forecast versions 2.13 dated 2011-02-16 and 2.14 dated 2011-03-04
Description: Methods and tools for displaying and analysing univariate
time series forecasts including exponential smoothing via state
space models and automatic ARIMA modelling.
Author: Rob J Hyndman
Maintainer: Rob J Hyndman
ChangeLog | 51 ++++------------------------------------
DESCRIPTION | 8 +++---
NAMESPACE | 5 ++--
R/arima.R | 6 +++-
R/errors.R | 45 ++++++++++++++++++++----------------
R/forecast.R | 66 ++++++++++++++++++++++++++++++++---------------------
R/graph.R | 2 -
R/lm.R |only
man/forecast.lm.Rd |only
9 files changed, 83 insertions(+), 100 deletions(-)
Title: Elimination-by-Aspects (EBA) Models
Diff between eba versions 1.5-7 dated 2010-05-10 and 1.6-0 dated 2011-03-04
Description: Fitting and testing multi-attribute probabilistic choice
models, especially the Bradley-Terry-Luce (BTL) model (Bradley
& Terry, 1952; Luce, 1959), elimination-by-aspects (EBA) models
(Tversky, 1972), and preference tree (Pretree) models (Tversky
& Sattath, 1979).
Author: Florian Wickelmaier
Maintainer: Florian Wickelmaier
ChangeLog | 14 ++++
DESCRIPTION | 10 +-
R/EBA_fast.R | 179 +++++++++++++++++++++++++++++++++-------------------
R/eba.order.R | 54 +++++++++------
R/logLik.eba.R | 2
R/thurstone.R | 6 +
R/zzMethods.R | 2
man/OptiPt.Rd | 40 ++++++-----
man/boot.Rd | 2
man/celebrities.Rd | 2
man/cov.u.Rd | 22 ++++--
man/drugrisk.Rd | 27 +++++--
man/eba.order.Rd | 20 ++---
man/group.test.Rd | 6 +
man/heaviness.Rd | 26 ++++++-
man/linear2btl.Rd | 5 -
man/simulate.eba.Rd | 6 -
man/uscale.Rd |only
man/wald.test.Rd | 11 +--
19 files changed, 278 insertions(+), 156 deletions(-)
Title: Visualising bipartite networks and calculating some (ecological)
indices.
Diff between bipartite versions 1.14 dated 2010-12-21 and 1.15 dated 2011-03-04
Description: Bipartite provides functions to visualise webs and
calculate a series of indices commonly used to describe pattern
in ecological webs. It focusses on webs consisting of only two
trophic levels, e.g. pollination webs or predator-prey-webs.
Visualisation is important to get an idea of what we are
actually looking at, while the indices summarise different
aspects of the webs topology.
Author: Carsten F. Dormann and Bernd Gruber, with additional code from
Mariano Devoto, Jochen Fruend, Jose Iriondo, Rouven Strauss and
Diego Vazquez, also based on C-code developed by Nils
Bluethgen, Aaron Clauset/Rouven Strauss and Miguel
Rodriguez-Girones.
Maintainer: Carsten F. Dormann
bipartite-1.14/bipartite/man/ND.Rd |only
bipartite-1.15/bipartite/DESCRIPTION | 10 ++--
bipartite-1.15/bipartite/R/computeModules.R | 18 ++++----
bipartite-1.15/bipartite/R/networklevel.R | 16 +++----
bipartite-1.15/bipartite/R/shuffle.web.R | 11 +++-
bipartite-1.15/bipartite/R/swap.web.R | 19 +++++---
bipartite-1.15/bipartite/Wishlist.txt |only
bipartite-1.15/bipartite/man/ND.rd |only
bipartite-1.15/bipartite/man/bipartite-package.Rd | 14 ++++--
bipartite-1.15/bipartite/man/moduleWeb-class.Rd | 1
bipartite-1.15/bipartite/man/networklevel.Rd | 8 +--
bipartite-1.15/bipartite/man/swap.web.Rd | 12 ++++-
bipartite-1.15/bipartite/man/vazarr.Rd | 49 ++++++++--------------
bipartite-1.15/bipartite/man/vazcer.Rd | 49 ++++++++--------------
bipartite-1.15/bipartite/man/vazllao.Rd | 49 ++++++++--------------
bipartite-1.15/bipartite/man/vazmasc.Rd | 49 ++++++++--------------
bipartite-1.15/bipartite/man/vazmasnc.Rd | 48 ++++++++-------------
bipartite-1.15/bipartite/web.info.r |only
18 files changed, 168 insertions(+), 185 deletions(-)
Title: Normalize sample weights using marginal total population
weights.
Diff between rake versions 1.1 dated 2010-04-12 and 1.2 dated 2011-03-04
Description: Raking a survey dataset entails re-weighting a sample by
making the sample marginal totals agree with the population
marginal totals for two survey response variables. Raking is a
robust technique that is often useful for dealing with
nonresponse. The 'rake' package streamlines the process of
Raking by creating the special 'rake' class, which is
essentially a summary of the sample weights.
Author: Toby Dylan Hocking
Maintainer: Toby Dylan Hocking
rake-1.1/rake/inst/doc/Makefile |only
rake-1.1/rake/inst/doc/rake-manual.tex |only
rake-1.2/rake/DESCRIPTION | 8 ++++----
rake-1.2/rake/NEWS |only
rake-1.2/rake/data/certify.RData |binary
rake-1.2/rake/inst/doc/rake-manual.Snw | 24 ++++++++++++------------
rake-1.2/rake/inst/doc/rake-manual.pdf |binary
rake-1.2/rake/inst/doc/refs.bib |only
rake-1.2/rake/man/predict.rake.Rd | 2 +-
rake-1.2/rake/man/rakeformat.Rd | 4 ++--
10 files changed, 19 insertions(+), 19 deletions(-)
Title: R packge for simulating biological sequence evolution
Diff between phylosim versions 0.13 dated 2011-02-15 and 0.14 dated 2011-03-04
Description: PhyloSim is an extensible object-oriented framework for
the Monte Carlo simulation of sequence evolution written in 100
percent R. It is built on the top of the R.oo and ape packages
and uses Gillespie's direct method to simulate substitutions,
insertions and deletions.
Author: Botond Sipos
Maintainer: Botond Sipos
DESCRIPTION | 8 ++++----
R/BrownianInsertor.R | 20 ++++++++++----------
R/PhyloSim.R | 1 -
inst/doc/Makefile | 6 ------
inst/doc/PhyloSim.pdf |binary
5 files changed, 14 insertions(+), 21 deletions(-)
Title: display and analyze ROC curves
Diff between pROC versions 1.4.1 dated 2011-01-27 and 1.4.2 dated 2011-03-04
Description: Tools for visualizing, smoothing and comparing receiver
operating characteristic (ROC curves). (Partial) area under the
curve (AUC) can be compared with statistical tests based on
U-statistics or bootstrap. Confidence intervals can be computed
for (p)AUC or ROC curves.
Author: Xavier Robin, Natacha Turck, Alexandre Hainard, Natalia
Tiberti, Frédérique Lisacek, Jean-Charles Sanchez and Markus
Müller
Maintainer: Xavier Robin
DESCRIPTION | 8 ++--
NEWS | 5 ++
R/roc.test.R | 93 ++++++++++++++++++++++++----------------------------
inst/CITATION | 20 ++++-------
man/pROC-package.Rd | 15 ++++++++
man/roc.test.Rd | 11 ++++++
pROC-Ex.R | 10 +++--
7 files changed, 93 insertions(+), 69 deletions(-)
Title: Utilities for working with R's operators
Diff between operator.tools versions 1.0.0 dated 2010-07-24 and 1.2.1 dated 2011-03-04
More information about operator.tools at CRAN
Description: Utilities for working with R's operators
Author: Christopher Brown
Maintainer: Christopher Brown
operator.tools-1.0.0/operator.tools/NEWS |only
operator.tools-1.0.0/operator.tools/R/ARCHIVE |only
operator.tools-1.0.0/operator.tools/R/init.pkg.operators.R |only
operator.tools-1.0.0/operator.tools/inst/options |only
operator.tools-1.0.0/operator.tools/tests/doRUnit.R |only
operator.tools-1.2.1/operator.tools/ChangeLog | 36 +++++++++
operator.tools-1.2.1/operator.tools/DESCRIPTION | 14 +--
operator.tools-1.2.1/operator.tools/R/fun2name.R | 24 +++++-
operator.tools-1.2.1/operator.tools/R/init.R | 5 +
operator.tools-1.2.1/operator.tools/R/inverse.R | 37 +++++-----
operator.tools-1.2.1/operator.tools/R/rel.type.R | 21 +++++
operator.tools-1.2.1/operator.tools/R/zzz.R | 26 +------
operator.tools-1.2.1/operator.tools/TODO | 32 +++++++-
operator.tools-1.2.1/operator.tools/man/operator.tools-package.Rd | 10 +-
operator.tools-1.2.1/operator.tools/man/rel.type.Rd | 1
operator.tools-1.2.1/operator.tools/tests/1_init.R |only
operator.tools-1.2.1/operator.tools/tests/2_operators.R |only
operator.tools-1.2.1/operator.tools/tests/3_inverse.R |only
18 files changed, 149 insertions(+), 57 deletions(-)
Permanent link
Title: Solve systems of non linear equations
Diff between nleqslv versions 1.8.2 dated 2011-03-02 and 1.8.3 dated 2011-03-04
Description: Solve a system of non linear equations using a Broyden or
a Newton method with a choice of global strategies such as
linesearch and trust region. There are options for using a
numerical or an analytical jacobian and fixed or automatic
scaling of parameters.
Author: Berend Hasselman
Maintainer: Berend Hasselman
nleqslv-1.8.2/nleqslv/00hglog.txt |only
nleqslv-1.8.3/nleqslv/DESCRIPTION | 8 ++++----
nleqslv-1.8.3/nleqslv/NEWS | 5 +++++
nleqslv-1.8.3/nleqslv/R/nleqslv.R | 2 +-
nleqslv-1.8.3/nleqslv/man/nleqslv.Rd | 7 +++++++
5 files changed, 17 insertions(+), 5 deletions(-)
Title: mapReduce - flexible mapReduce algorithm for parallel
computation
Diff between mapReduce versions 1.2.1 dated 2011-03-03 and 1.2.2 dated 2011-03-04
Description: mapReduce is an algorithm provides a simple framework for
parallel computations. This implementation provides (a) a pure
R implementation (b) a syntax following the mapReduce paper and
(c) flexible and parallelizable back end.
Author: Christopher Brown
Maintainer: Christopher Brown
mapReduce-1.2.1/mapReduce/mapReduce_1.2.1.tar.gz |only
mapReduce-1.2.2/mapReduce/ChangeLog | 6 ++++++
mapReduce-1.2.2/mapReduce/DESCRIPTION | 8 ++++----
mapReduce-1.2.2/mapReduce/R/zzz.R |only
mapReduce-1.2.2/mapReduce/man/mapReduce-package.Rd | 2 +-
mapReduce-1.2.2/mapReduce/tests |only
6 files changed, 11 insertions(+), 5 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Diff between RcppArmadillo versions 0.2.13 dated 2011-02-19 and 0.2.14 dated 2011-03-04
Description: R and Armadillo integration using Rcpp Armadillo is a
templated C++ linear algebra library (by Conrad Sanderson) that
aims towards a good balance between speed and ease of use.
Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions.
Various matrix decompositions are provided through optional
integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to
combine several operations into one, and to reduce (or
eliminate) the need for temporaries. This is accomplished
through recursive templates and template meta-programming.
This library is useful if C++ has been decided as the language of
choice (due to speed and/or integration capabilities), rather
than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 1.1.4). Thus users do not
need to install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++
integration.
Armadillo is licensed under the GNU LGPL version 3 or later, while
RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is
licenses under the GNU GPL version 2 or later, as is the rest
of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Romain Francois, Dirk Eddelbuettel and Doug Bates
ChangeLog | 14 ++++++
DESCRIPTION | 6 +-
inst/NEWS | 11 +++++
inst/doc/Makefile | 15 +++++--
inst/doc/RcppArmadillo-unitTests.pdf |binary
inst/doc/unitTests-results/RcppArmadillo-unitTests.html | 18 ++++----
inst/doc/unitTests-results/RcppArmadillo-unitTests.txt | 34 ++++++++--------
inst/include/RcppArmadillo/Col_meat.h | 24 ++++++-----
inst/include/RcppArmadillo/Row_meat.h | 19 ++++----
src/fastLm.cpp | 15 ++-----
10 files changed, 94 insertions(+), 62 deletions(-)
Title: Various programming utilities
Diff between R.utils versions 1.6.4 dated 2011-03-03 and 1.6.5 dated 2011-03-04
Description: This package provides utility classes and methods useful
when programming in R and developing R packages.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
R.utils-1.6.4/R.utils/R/beta |only
R.utils-1.6.4/R.utils/R/devel |only
R.utils-1.6.5/R.utils/DESCRIPTION | 10 +---
R.utils-1.6.5/R.utils/R/createFileAtomically.R | 48 +++++++++-------------
R.utils-1.6.5/R.utils/R/popBackupFile.R |only
R.utils-1.6.5/R.utils/R/pushBackupFile.R |only
R.utils-1.6.5/R.utils/R/pushTemporaryFile.R | 4 -
R.utils-1.6.5/R.utils/R/renameFile.R |only
R.utils-1.6.5/R.utils/incl/pushBackupFile.Rex |only
R.utils-1.6.5/R.utils/inst/NEWS | 18 +++++---
R.utils-1.6.5/R.utils/man/Sys.setenv.Rd |only
R.utils-1.6.5/R.utils/man/createFileAtomically.Rd | 12 ++++-
R.utils-1.6.5/R.utils/man/popBackupFile.Rd |only
R.utils-1.6.5/R.utils/man/pushBackupFile.Rd |only
R.utils-1.6.5/R.utils/man/pushTemporaryFile.Rd | 4 -
R.utils-1.6.5/R.utils/man/renameFile.Rd |only
16 files changed, 52 insertions(+), 44 deletions(-)
Title: CITation ANalysis toolpack
Diff between CITAN versions 2011.02-1 dated 2011-02-28 and 2011.03-1 dated 2011-03-04
Description: CITAN is a library of functions useful in - but not
limited to - quantitative research in the field of
scientometrics. It also contains various methods for dealing
with the Pareto-type II distribution.
Author: Marek Gagolewski
Maintainer: Marek Gagolewski
CITAN-2011.02-1/CITAN/R/p2.zsestimate.R |only
CITAN-2011.03-1/CITAN/CHANGELOG |only
CITAN-2011.03-1/CITAN/DESCRIPTION | 15 +-
CITAN-2011.03-1/CITAN/NAMESPACE | 4
CITAN-2011.03-1/CITAN/R/CITAN-package.R | 13 +-
CITAN-2011.03-1/CITAN/R/distrib_p2.R | 24 +--
CITAN-2011.03-1/CITAN/R/impact_functions.R | 21 +--
CITAN-2011.03-1/CITAN/R/p2.confint.h.R | 6
CITAN-2011.03-1/CITAN/R/p2.confint.rho.R | 16 +-
CITAN-2011.03-1/CITAN/R/p2.confint.rho.approx.R | 16 +-
CITAN-2011.03-1/CITAN/R/p2.estimate.R |only
CITAN-2011.03-1/CITAN/R/p2.ftest.R | 13 +-
CITAN-2011.03-1/CITAN/R/p2.goftest.R | 33 +++--
CITAN-2011.03-1/CITAN/R/p2.htest.R | 64 +++++-----
CITAN-2011.03-1/CITAN/R/p2.htest.approx.R |only
CITAN-2011.03-1/CITAN/man/CITAN-package.Rd | 33 +----
CITAN-2011.03-1/CITAN/man/dpareto2.Rd | 6
CITAN-2011.03-1/CITAN/man/index.h.Rd | 4
CITAN-2011.03-1/CITAN/man/pareto2.confint.h.Rd | 4
CITAN-2011.03-1/CITAN/man/pareto2.confint.rho.Rd | 4
CITAN-2011.03-1/CITAN/man/pareto2.confint.rho.approx.Rd | 4
CITAN-2011.03-1/CITAN/man/pareto2.confint.rho.approx.lower.Rd | 4
CITAN-2011.03-1/CITAN/man/pareto2.confint.rho.approx.upper.Rd | 4
CITAN-2011.03-1/CITAN/man/pareto2.confint.rho.lower.Rd | 4
CITAN-2011.03-1/CITAN/man/pareto2.confint.rho.upper.Rd | 4
CITAN-2011.03-1/CITAN/man/pareto2.ftest.Rd | 6
CITAN-2011.03-1/CITAN/man/pareto2.goftest.Rd | 17 +-
CITAN-2011.03-1/CITAN/man/pareto2.htest.Rd | 12 -
CITAN-2011.03-1/CITAN/man/pareto2.htest.approx.Rd |only
CITAN-2011.03-1/CITAN/man/pareto2.mlekestimate.Rd |only
CITAN-2011.03-1/CITAN/man/pareto2.zsestimate.Rd | 8 -
CITAN-2011.03-1/CITAN/man/ppareto2.Rd | 6
CITAN-2011.03-1/CITAN/man/qpareto2.Rd | 6
CITAN-2011.03-1/CITAN/man/rpareto2.Rd | 6
34 files changed, 196 insertions(+), 161 deletions(-)