Title: Linear Group Fixed Effects
Diff between lfe versions 1.0-418 dated 2011-03-10 and 1.1-427 dated 2011-03-11
Description: Estimates linear models with multiple group fixed effects
Author: Simen Gaure
Maintainer: Simen Gaure
lfe-1.0-418/lfe/man/print.lm.fe.Rd |only
lfe-1.1-427/lfe/DESCRIPTION | 6 -
lfe-1.1-427/lfe/NAMESPACE | 6 +
lfe-1.1-427/lfe/R/lfe.R | 105 +-------------------------------
lfe-1.1-427/lfe/R/utils.R |only
lfe-1.1-427/lfe/exec/lfescript | 2
lfe-1.1-427/lfe/inst/CITATION | 2
lfe-1.1-427/lfe/inst/doc/CHANGELOG |only
lfe-1.1-427/lfe/man/felm.Rd | 9 +-
lfe-1.1-427/lfe/man/getfe.Rd | 18 ++---
lfe-1.1-427/lfe/man/lfe-package.Rd | 12 +--
lfe-1.1-427/lfe/tests/lfetest.R | 6 -
lfe-1.1-427/lfe/tests/lfetest.Rout.save | 7 --
lfe-1.1-427/lfe/tests/verify.R |only
lfe-1.1-427/lfe/tests/verify.Rout.save |only
15 files changed, 40 insertions(+), 133 deletions(-)
Title: Social Relation Model (SRM) analyses for single or multiple
round-robin groups
Diff between TripleR versions 1.0.5 dated 2011-02-10 and 1.0.6 dated 2011-03-11
Description: Social Relation Model (SRM) analyses for single or
multiple round-robin groups are performed. These analyses are
either based on one manifest variable, one latent construct
measured by two manifest variables, two manifest variables and
their bivariate relations, or two latent constructs each
measured by two manifest variables. Within-group t-tests for
variance components and covariances are provided for single
groups, between-groups t-tests for multiple groups. Preliminary
handling for missing values is provided.
Author: S.C. Schmukle, F.D. Schönbrodt and M.D. Back
Maintainer: Felix Schönbrodt
DESCRIPTION | 12 ++++++------
NEWS | 7 +++++++
inst/doc/TripleR.pdf |binary
3 files changed, 13 insertions(+), 6 deletions(-)
Title: Simulation and Analysis of Random Fields
Diff between RandomFields versions 2.0.44 dated 2011-03-02 and 2.0.45 dated 2011-03-11
Description: Simulation of Gaussian and extreme value random fields;
conditional simulation; kriging
Author: Martin Schlather
Maintainer: Martin Schlather
DESCRIPTION | 6
R/MLE.R | 426 +++++++++++++++++++++++++++++---------------------
R/convert.R | 2
R/getNset.R | 30 ---
man/Covariance.Rd | 134 ++++++++-------
man/CovarianceFct.Rd | 9 +
man/changings.Rd | 4
man/fitvario.Rd | 49 ++++-
man/parampositions.Rd | 48 +++++
src/InternalCov.cc | 83 +++++----
src/MLE.cc | 12 -
src/RF.h | 9 -
src/RandomFields.h | 3
src/initNerror.cc | 67 +++----
src/simu.cc | 6
tests/RFtest.stupid.R | 16 +
16 files changed, 537 insertions(+), 367 deletions(-)
Title: Power and Sample size based on two one-sided t-tests (TOST) for
bioequivalence studies
Diff between PowerTOST versions 0.8-3 dated 2011-01-18 and 0.8-4 dated 2011-03-11
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies. See
function known.designs() for study designs covered. Moreover
the package contains functions for power and sample size based
on 'expected' power in case of uncertain (estimated)
variability. Added are functions for the power and sample size
for the ratio of two means with normally distributed data on
the original scale (based on Fieller's confidence ('fiducial')
interval).
Author: Detlew Labes
Maintainer: D. Labes
DESCRIPTION | 8 ++++----
NEWS | 7 +++++++
R/Fieller.R | 14 +++++++++-----
R/SampleSize.R | 31 ++++++++++++++++++++++---------
R/expSampleSize.R | 10 ++++++----
man/PowerTOST-package.Rd | 4 ++--
man/exppower.TOST.Rd | 2 +-
man/expsampleN.TOST.Rd | 6 +++++-
man/power.RatioF.Rd | 14 ++++++++++----
man/power.TOST.Rd | 2 +-
man/sampleN.RatioF.Rd | 18 ++++++++++++------
man/sampleN.TOST.Rd | 8 ++++++--
12 files changed, 85 insertions(+), 39 deletions(-)
Title: Model selection and multimodel inference based on (Q)AIC(c)
Diff between AICcmodavg versions 1.13 dated 2011-01-11 and 1.14 dated 2011-03-11
Description: This package includes functions to create model selection
tables based on Akaike's information criterion (AIC) and the
second-order AIC (AICc), as well as their quasi-likelihood
counterparts (QAIC, QAICc). Tables are printed with delta AIC
and Akaike weights. The package also includes functions to
conduct model averaging (multimodel inference) for a given
parameter of interest or predicted values. Other handy
functions enable the computation of relative variable
importance, evidence ratios, and confidence sets for the best
model. The present version works with linear models ('lm'
class), generalized linear models ('glm' class), linear models
fit by generalized least squares ('gls' class), linear mixed
models ('lme' class), generalized linear mixed models ('mer'
class), multinomial and ordinal logistic regressions
('multinom' and 'polr' classes).
Author: Marc J. Mazerolle
Maintainer: Marc J. Mazerolle
DESCRIPTION | 8 ++++----
R/modavg.mer.R | 11 ++++++++---
inst/NEWS | 10 ++++++++--
man/AICcmodavg-package.Rd | 4 ++--
4 files changed, 22 insertions(+), 11 deletions(-)
Title: Multivariate partitioning
Diff between mvpart versions 1.3-1 dated 2010-03-01 and 1.4-0 dated 2011-03-11
Description: Multivariate regression trees
Author: rpart by Terry M Therneau and Beth Atkinson
Maintainer: Glenn De'ath
Changelog | 1 +
DESCRIPTION | 8 ++++----
R/gdist.R | 3 ++-
3 files changed, 7 insertions(+), 5 deletions(-)
Title: eVenn: A powerful tool to compare lists and draw Venn diagrams.
Diff between eVenn versions 2.0 dated 2011-03-08 and 2.0.1 dated 2011-03-11
Description: Compute a matrix comparison of lists (from 2 to infinite)
and plot the results in a Venn diagram if (N<=4). It is
possible to produce a complete annotated file, merging the
annotations of the compared lists. It is also possible to
compute an overlaps table to compute the overlaps proportions
of all the couples of lists.
Author: Nicolas Cagnard
Maintainer: Nicolas Cagnard
DESCRIPTION | 8 ++++----
R/evenn.R | 20 ++++++++------------
man/eVenn-package.Rd | 5 +++--
3 files changed, 15 insertions(+), 18 deletions(-)
Title: Baseline identification and peak decomposition for x-ray
diffractograms
Diff between diffractometry versions 0.1-02 dated 2010-03-07 and 0.1-03 dated 2011-03-11
More information about diffractometry at CRAN
Description: Residual-based baseline identification and peak
decomposition for x-ray diffractograms as introduced in
Davies/Gather/Mergel/Meise/Mildenberger (2008).
Author: P.L. Davies, U. Gather, M. Meise, D.Mergel, T. Mildenberger.
Additional Code by T. Bernholt and T. Hofmeister
Maintainer: T. Mildenberger
DESCRIPTION | 10 +++++-----
R/baselinefit.r | 8 ++++++--
src/Cbaselinefit.c | 22 +++++++++++-----------
3 files changed, 22 insertions(+), 18 deletions(-)
Permanent link
Title: Rcpp integration for Armadillo templated linear algebra library
Diff between RcppArmadillo versions 0.2.15 dated 2011-03-04 and 0.2.16 dated 2011-03-11
Description: R and Armadillo integration using Rcpp Armadillo is a
templated C++ linear algebra library (by Conrad Sanderson) that
aims towards a good balance between speed and ease of use.
Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions.
Various matrix decompositions are provided through optional
integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to
combine several operations into one, and to reduce (or
eliminate) the need for temporaries. This is accomplished
through recursive templates and template meta-programming.
This library is useful if C++ has been decided as the language of
choice (due to speed and/or integration capabilities), rather
than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 1.1.8). Thus users do not
need to install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++
integration.
Armadillo is licensed under the GNU LGPL version 3 or later, while
RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is
licenses under the GNU GPL version 2 or later, as is the rest
of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Romain Francois, Dirk Eddelbuettel and Doug Bates
ChangeLog | 6
DESCRIPTION | 10
inst/NEWS | 11
inst/doc/RcppArmadillo-unitTests.pdf |binary
inst/doc/unitTests-results/RcppArmadillo-unitTests.html | 6
inst/doc/unitTests-results/RcppArmadillo-unitTests.txt | 38 -
inst/include/armadillo | 2
inst/include/armadillo_bits/Cube_meat.hpp | 10
inst/include/armadillo_bits/Mat_meat.hpp | 30 -
inst/include/armadillo_bits/arma_ostream_meat.hpp | 119 ++---
inst/include/armadillo_bits/arma_ostream_proto.hpp | 8
inst/include/armadillo_bits/arma_version.hpp | 6
inst/include/armadillo_bits/arrayops_meat.hpp | 39 +
inst/include/armadillo_bits/arrayops_proto.hpp | 5
inst/include/armadillo_bits/auxlib_meat.hpp | 10
inst/include/armadillo_bits/constants.hpp | 322 +++++++++++---
inst/include/armadillo_bits/diskio_meat.hpp | 46 +-
inst/include/armadillo_bits/eglue_core_meat.hpp | 345 +++-------------
inst/include/armadillo_bits/eop_aux.hpp | 16
inst/include/armadillo_bits/eop_core_meat.hpp | 105 +---
inst/include/armadillo_bits/eop_core_proto.hpp | 6
inst/include/armadillo_bits/fn_elem.hpp | 58 ++
inst/include/armadillo_bits/fn_misc.hpp | 53 ++
inst/include/armadillo_bits/fn_norm.hpp | 14
inst/include/armadillo_bits/format_wrap.hpp | 12
inst/include/armadillo_bits/op_max_meat.hpp | 43 -
inst/include/armadillo_bits/op_mean_meat.hpp | 38 -
inst/include/armadillo_bits/op_min_meat.hpp | 46 +-
inst/include/armadillo_bits/op_var_meat.hpp | 27 -
inst/include/armadillo_bits/restrictors.hpp | 9
inst/include/armadillo_bits/traits.hpp | 20
31 files changed, 782 insertions(+), 678 deletions(-)
Title: Tools for mapping of quantitative traits of genetically related
individuals and calculating identity coefficients from a
pedigree
Diff between QTLRel versions 0.1 dated 2010-12-24 and 0.2 dated 2011-03-11
Description: This software provides tools for quantitative trait
mapping in populations such as advanced intercross lines where
relatedness among individuals should not be ignored. It can
estimate background genetic variances, impute missing
genotypes, simulate genotypes, perform a genome scan for
putative quantitative trait loci (QTL), and plot mapping
results. It also has functions to calculate identity
coefficients for pedigrees, especially suitable for pedigrees
that consist of a large number of generations.
Author: Riyan Cheng
Maintainer: Riyan Cheng
QTLRel-0.1/QTLRel/man/scan4p.Rd |only
QTLRel-0.1/QTLRel/oldFiles |only
QTLRel-0.2/QTLRel/DESCRIPTION | 21 -
QTLRel-0.2/QTLRel/NAMESPACE | 16
QTLRel-0.2/QTLRel/R/aic.R | 229 ++----------
QTLRel-0.2/QTLRel/R/estVC.R | 55 +-
QTLRel-0.2/QTLRel/R/herit.R | 49 --
QTLRel-0.2/QTLRel/R/idcoef.R |only
QTLRel-0.2/QTLRel/R/nullSim.R | 10
QTLRel-0.2/QTLRel/R/plots.R | 25 -
QTLRel-0.2/QTLRel/R/rem.R |only
QTLRel-0.2/QTLRel/R/scan.R | 673 +-----------------------------------
QTLRel-0.2/QTLRel/changeLog | 2
QTLRel-0.2/QTLRel/man/aicVC.Rd | 11
QTLRel-0.2/QTLRel/man/blup.Rd | 1
QTLRel-0.2/QTLRel/man/cic.Rd |only
QTLRel-0.2/QTLRel/man/estVC.Rd | 30 +
QTLRel-0.2/QTLRel/man/genMatrix.Rd |only
QTLRel-0.2/QTLRel/man/genoImpute.Rd | 5
QTLRel-0.2/QTLRel/man/genoProb.Rd | 5
QTLRel-0.2/QTLRel/man/genoSim.Rd | 3
QTLRel-0.2/QTLRel/man/hapSim.Rd | 3
QTLRel-0.2/QTLRel/man/kinship.Rd |only
QTLRel-0.2/QTLRel/man/lodci.Rd | 5
QTLRel-0.2/QTLRel/man/mAIC.Rd | 14
QTLRel-0.2/QTLRel/man/misFct.Rd | 1
QTLRel-0.2/QTLRel/man/nullSim.Rd | 12
QTLRel-0.2/QTLRel/man/pedRecode.Rd | 1
QTLRel-0.2/QTLRel/man/plots.Rd | 11
QTLRel-0.2/QTLRel/man/qqplot.Rd | 12
QTLRel-0.2/QTLRel/man/qtlVar.Rd | 3
QTLRel-0.2/QTLRel/man/rem.Rd |only
QTLRel-0.2/QTLRel/man/scan.Rd | 55 +-
QTLRel-0.2/QTLRel/src/idcoef.cc |only
QTLRel-0.2/QTLRel/src/idcoef.h |only
35 files changed, 222 insertions(+), 1030 deletions(-)