Wed, 23 Mar 2011

Package CITAN updated to version 2011.03-2 with previous version 2011.03-1 dated 2011-03-04

Title: CITation ANalysis toolpack
Description: CITAN is a library of functions useful in - but not limited to - quantitative research in the field of scientometrics. It also contains various methods for dealing with the Pareto-type II distribution.
Author: Marek Gagolewski
Maintainer: Marek Gagolewski

Diff between CITAN versions 2011.03-1 dated 2011-03-04 and 2011.03-2 dated 2011-03-23

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Package mht updated to version 1.1 with previous version 1.0 dated 2011-03-22

Title: Multiple Hypotheses Testing For Variable Selection
Description: Multiple Hypotheses Testing For Variable Selection
Author: F.Rohart
Maintainer: F.Rohart

Diff between mht versions 1.0 dated 2011-03-22 and 1.1 dated 2011-03-23

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Package TSPostgreSQL updated to version 2011.3-1 with previous version 2010.12-1 dated 2010-12-22

Title: Time Series Database Interface extensions for PostgreSQL
Description: TSPostgreSQL provides a PostgreSQL interface for TSdbi.
Author: Paul Gilbert
Maintainer: Paul Gilbert

Diff between TSPostgreSQL versions 2010.12-1 dated 2010-12-22 and 2011.3-1 dated 2011-03-23

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Package ecolMod updated to version 1.2.3 with previous version 1.2.2 dated 2009-11-23

Title: "A practical guide to ecological modelling - using R as a simulation platform"
Description: Figures, data sets and examples from the book "A practical guide to ecological modelling - using R as a simulation platform" by Karline Soetaert and Peter MJ Herman (2009). Springer. All figures from chapter x can be generated by "demo(chapx)", where x = 1 to 11. The R-scripts of the model examples discussed in the book are in subdirectory "examples", ordered per chapter. Solutions to model projects are in the same subdirectories.
Author: Karline Soetaert , Peter MJ Herman
Maintainer: Karline Soetaert

Diff between ecolMod versions 1.2.2 dated 2009-11-23 and 1.2.3 dated 2011-03-23

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Package TSMySQL updated to version 2011.3-1 with previous version 2010.12-1 dated 2010-12-22

Title: Time Series Database Interface extensions for MySQL
Description: TSMySQL provides a MySQL interface for TSdbi.
Author: Paul Gilbert
Maintainer: Paul Gilbert

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Package SpatialExtremes updated to version 1.8-0 with previous version 1.7-0 dated 2010-10-29

Title: Modelling Spatial Extremes
Description: This package proposes several approaches for spatial extremes modelling.
Author: Mathieu Ribatet
Maintainer: Mathieu Ribatet

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Package ReacTran updated to version 1.3.1 with previous version 1.3 dated 2010-09-16

Title: Reactive transport modelling in 1D, 2D and 3D
Description: Routines for developing models that describe reaction and advective-diffusive transport in one, two or three dimensions. Includes transport routines in porous media, in estuaries, and in bodies with variable shape.
Author: Karline Soetaert , Filip Meysman
Maintainer: Karline Soetaert

Diff between ReacTran versions 1.3 dated 2010-09-16 and 1.3.1 dated 2011-03-23

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Package LIM updated to version 1.4.2 with previous version 1.4.1 dated 2010-04-06

Title: Linear Inverse Model examples and solution methods.
Description: Functions that read and solve linear inverse problems (food web problems, linear programming problems). These problems find solutions to linear or quadratic functions: min or max (f(x)), where f(x) = ||Ax-b||^2 or f(x) = sum(ai*xi) subject to equality constraints Ex=f and inequality constraints Gx>=h. Uses package limSolve.
Author: Karline Soetaert , Dick van Oevelen
Maintainer: Karline Soetaert

Diff between LIM versions 1.4.1 dated 2010-04-06 and 1.4.2 dated 2011-03-23

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Package tframePlus updated to version 2011.3-2 with previous version 2010.4-1 dated 2011-01-20

Title: Time Frame coding kernel extensions
Description: Extensions and additional tframe utilities.
Author: Paul Gilbert
Maintainer: Paul Gilbert

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Package seacarb updated to version 2.4.1 with previous version 2.4 dated 2011-03-15

Title: seawater carbonate chemistry with R
Description: Calculates parameters of the seawater carbonate system. Code and/or corrections were contributed by Andreas Andersson, Jean-Marie Epitalon, Bernard Gentili, Andreas Hofmann, Jim Orr, Aurelien Proye and Karline Soetaert
Author: Heloise Lavigne, Jean-Pierre Gattuso
Maintainer: Jean-Pierre Gattuso

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Package rainbow updated to version 2.3.3 with previous version 2.3.2 dated 2011-02-07

Title: Rainbow plots, bagplots and boxplots for functional data
Description: Functions and datasets for functional data display and outlier detection.
Author: Han Lin Shang and Rob J Hyndman
Maintainer: Han Lin Shang

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Package popbio updated to version 2.2 with previous version 2.1 dated 2010-09-30

Title: Construction and analysis of matrix population models
Description: Construct and analyze projection matrix models from a demography study of marked individuals classified by age or stage. The package covers methods described in Matrix Population Models by Caswell (2001) and Quantitative Conservation Biology by Morris and Doak (2002).
Author: Chris Stubben, Brook Milligan, Patrick Nantel
Maintainer: Chris Stubben

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Package fastcluster updated to version 1.0.4 with previous version 1.0.3 dated 2011-03-21

Title: Fast hierarchical clustering routines for R and Python
Description: This is a two-in-one package which provides interfaces to both R and Python. It implements fast hierarchical clustering routines on a set of dissimilarities. The R interface is designed as a drop-in replacement for the function “hclust” in the “stats” package and for the “flashClust“ package. It provides the same functionality, with the benefit of a much faster implementation. The Python interface is written as a replacement for the “linkage” function in the “scipy.cluster.hierarchy” module. Again, it provides the same functionality as the original function but a much faster implementation. For information on how to install the Python files, see the file INSTALL in the source distribution.
Author: Daniel Müllner, http://math.stanford.edu/~muellner
Maintainer: Daniel Müllner

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Package dse updated to version 2011.3-1 with previous version 2009.12-1 dated 2011-01-20

Title: Dynamic Systems Estimation (time series package)
Description: Package dse provides tools for multivariate, linear, time-invariant, time series models. It includes ARMA and state-space representations, and methods for converting between them. It also includes simulation methods and several estimation functions. The package has functions for looking at model roots, stability, and forecasts at different horizons. The ARMA model representaion is general, so that VAR, VARX, ARIMA, ARMAX, ARIMAX can all be considered to be special cases. Kalman filter and smoother estimates can be obtained from the state space model, and state-space model reduction techniques are implemented. An introduction and User's Guide is available in a vignette.
Author: Paul Gilbert
Maintainer: Paul Gilbert

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Package caroline updated to version 0.4.5 with previous version 0.4.1 dated 2010-12-12

Title: A Collection of General Purpose Functions for R
Description: A collection of generic functions useful for various applications.
Author: David M. Schruth
Maintainer: David M. Schruth

Diff between caroline versions 0.4.1 dated 2010-12-12 and 0.4.5 dated 2011-03-23

 caroline-0.4.1/caroline/man/raAddAxlabs.Rd   |only
 caroline-0.4.5/caroline/DESCRIPTION          |    8 ++--
 caroline-0.4.5/caroline/R/RAy.R              |    5 ++
 caroline-0.4.5/caroline/R/aggregate.R        |   49 +++++++++++++++------------
 caroline-0.4.5/caroline/R/database.R         |only
 caroline-0.4.5/caroline/R/heatmap.2.R        |only
 caroline-0.4.5/caroline/R/plots.R            |   16 ++++++--
 caroline-0.4.5/caroline/man/dbWriteTable2.Rd |only
 caroline-0.4.5/caroline/man/leghead.Rd       |    5 +-
 caroline-0.4.5/caroline/man/nerge.Rd         |    5 ++
 caroline-0.4.5/caroline/man/pies.Rd          |    6 ++-
 caroline-0.4.5/caroline/man/raAddArms.Rd     |    1 
 caroline-0.4.5/caroline/man/raAddAxLabs.Rd   |only
 caroline-0.4.5/caroline/man/raAddSigLines.Rd |    1 
 caroline-0.4.5/caroline/man/raPlot.Rd        |   43 ++++++++++++++---------
 caroline-0.4.5/caroline/man/vennMatrix.Rd    |    2 -
 16 files changed, 91 insertions(+), 50 deletions(-)

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Package alr3 updated to version 2.0.3 with previous version 2.0.2 dated 2011-01-05

Title: Data to accompany Applied Linear Regression 3rd edition
Description: This package is a companion to the textbook S. Weisberg (2005), "Applied Linear Regression," 3rd edition, Wiley. It includes all the data sets discussed in the book (except one), and a few functions that are tailored to the methods discussed in the book. As of version 2.0.0, this package depends on the car package. Many functions formerly in alr3 have been renamed and now reside in car. Data files have beeen lightly modified to make some data columns row labels.
Author: Sanford Weisberg
Maintainer: Sanford Weisberg

Diff between alr3 versions 2.0.2 dated 2011-01-05 and 2.0.3 dated 2011-03-23

 alr3-2.0.2/alr3/data/txtfiles |only
 alr3-2.0.3/alr3/DESCRIPTION   |    8 ++++----
 alr3-2.0.3/alr3/inst/extdata  |only
 3 files changed, 4 insertions(+), 4 deletions(-)

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Package afmtools updated to version 0.1.1 with previous version 0.1.0 dated 2011-03-21

Title: Estimation, Diagnostic and Forecasting Functions for ARFIMA models
Description: A collection of estimation, forecasting and diagnostic tools for autoregressive fractionally integrated moving-average process (ARFIMA).
Author: Javier Contreras-Reyes, George M. Goerg, Wilfredo Palma
Maintainer: Javier Contreras-Reyes

Diff between afmtools versions 0.1.0 dated 2011-03-21 and 0.1.1 dated 2011-03-23

 DESCRIPTION             |   17 +++++++++--------
 man/afmtools-package.Rd |   12 +++++++-----
 man/psi.j.Rd            |    1 +
 3 files changed, 17 insertions(+), 13 deletions(-)

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Package YjdnJlp updated to version 0.9.8 with previous version 0.9.7 dated 2011-03-21

Title: Text Analysis by Yahoo! Japan Develper Network
Description: Japanese Text Analysis using Yahoo! Japan develper Network (http://developer.yahoo.co.jp/webapi/jlp/)
Author: Yohei Sato
Maintainer: Yohei Sato

Diff between YjdnJlp versions 0.9.7 dated 2011-03-21 and 0.9.8 dated 2011-03-23

 DESCRIPTION            |    6 +++---
 R/classes.R            |    9 ++++++---
 man/YjdnJlp-package.Rd |    2 +-
 3 files changed, 10 insertions(+), 7 deletions(-)

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Package TSxls updated to version 2011.3-1 with previous version 2010.12-1 dated 2011-01-03

Title: Time Series Database Interface extension to connect to spreadsheets
Description: Provides TSdbi package methods to retrieve time series data from spreadsheets, pretending the spreadsheet is a database.
Author: Paul Gilbert
Maintainer: Paul Gilbert

Diff between TSxls versions 2010.12-1 dated 2011-01-03 and 2011.3-1 dated 2011-03-23

 DESCRIPTION        |   12 ++++++------
 NEWS               |    9 ++++++++-
 R/TSdbiMethods.R   |    8 +++++---
 inst/doc/Guide.pdf |binary
 4 files changed, 19 insertions(+), 10 deletions(-)

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New package TSzip with initial version 2011.3-1
Package: TSzip
Version: 2011.3-1
Date: 2011-3-14
Title: Time Series Database Interface extension to connect to zip files
Description: Provides TSdbi package methods to retrieve time series data from zipped, as if the files form a database.
Depends: R (>= 2.8.0), methods, DBI, TSdbi (>= 2010.12-1), tframe, tframePlus, gdata
Imports: methods, DBI, TSdbi (>= 2010.12-1)
Suggests: zoo, timeSeries, xts, tis, tframePlus (>= 2011.2-2)
Enhances: TSdbi
License: GPL-2 | file LICENSE
Author: Paul Gilbert
Maintainer: Paul Gilbert
URL: http://www.bank-banque-canada.ca/pgilbert
Repository: CRAN
Repository/R-Forge/Project: tsdbi
Repository/R-Forge/Revision: 233
Date/Publication: 2011-03-23 09:29:50
Packaged: 2011-03-15 21:45:09 UTC; rforge

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Package TSpadi updated to version 2011.3-1 with previous version 2010.12-1 dated 2010-12-22

Title: Time Series Database Interface extensions for PADI Time Series Server
Description: Provides methods for generics in the TSdbi package to connect through a protocol for application database interface (PADI) to a time series database (e.g. Fame).
Author: Paul Gilbert
Maintainer: Paul Gilbert

Diff between TSpadi versions 2010.12-1 dated 2010-12-22 and 2011.3-1 dated 2011-03-23

 DESCRIPTION         |   10 +++++-----
 NEWS                |   13 +++++++++++++
 R/TSdbiMethods.R    |   11 ++++++++++-
 R/padi.R            |    5 +++--
 inst/doc/Guide.pdf  |binary
 man/TSdbiMethods.Rd |    5 ++++-
 6 files changed, 35 insertions(+), 9 deletions(-)

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Package TSodbc updated to version 2011.3-1 with previous version 2010.12-1 dated 2010-12-22

Title: Time Series Database Interface extensions for ODBC
Description: TSodbc provides an ODBC interface for TSdbi.
Author: Paul Gilbert
Maintainer: Paul Gilbert

Diff between TSodbc versions 2010.12-1 dated 2010-12-22 and 2011.3-1 dated 2011-03-23

 DESCRIPTION        |   12 ++++++------
 NEWS               |    4 ++++
 inst/doc/Guide.pdf |binary
 3 files changed, 10 insertions(+), 6 deletions(-)

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Package TShistQuote updated to version 2011.3-1 with previous version 2010.12-1 dated 2010-12-22

Title: Time Series Database Interface extensions for get.hist.quote
Description: Provides methods for generics in the TSdbi package to retrieve data from historical quote URLs.
Author: Paul Gilbert
Maintainer: Paul Gilbert

Diff between TShistQuote versions 2010.12-1 dated 2010-12-22 and 2011.3-1 dated 2011-03-23

 DESCRIPTION        |   10 +++++-----
 NEWS               |    4 ++++
 R/TSdbiMethods.R   |    8 ++++++--
 inst/doc/Guide.pdf |binary
 4 files changed, 15 insertions(+), 7 deletions(-)

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Package TSgetSymbol updated to version 2011.3-1 with previous version 2010.12-1 dated 2010-12-22

Title: Time Series Database Interface extension to connect with getSymbols
Description: Provides methods for generics in the TSdbi package to retrieve data with getSymbols, in particular from the Federal Reserve FRED database.
Author: Paul Gilbert
Maintainer: Paul Gilbert

Diff between TSgetSymbol versions 2010.12-1 dated 2010-12-22 and 2011.3-1 dated 2011-03-23

 DESCRIPTION         |   10 +++++-----
 NEWS                |    2 +-
 R/TSdbiMethods.R    |    8 ++++++--
 inst/doc/Guide.pdf  |binary
 man/TSdbiMethods.Rd |    2 +-
 5 files changed, 13 insertions(+), 9 deletions(-)

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Package TSfame updated to version 2011.3-1 with previous version 2011.1-1 dated 2011-01-05

Title: Time Series Database Interface extensions for fame
Description: TSfame provides a fame interface for TSdbi.
Author: Paul Gilbert
Maintainer: Paul Gilbert

Diff between TSfame versions 2011.1-1 dated 2011-01-05 and 2011.3-1 dated 2011-03-23

 TSfame-2011.1-1/TSfame/R/tis.R            |only
 TSfame-2011.1-1/TSfame/man/tis.Rd         |only
 TSfame-2011.3-1/TSfame/DESCRIPTION        |   10 +++++-----
 TSfame-2011.3-1/TSfame/NAMESPACE          |   11 +----------
 TSfame-2011.3-1/TSfame/NEWS               |    4 ++++
 TSfame-2011.3-1/TSfame/R/TSdbiMethods.R   |    7 +++++--
 TSfame-2011.3-1/TSfame/R/TSdbiMethodsFS.R |    7 +++++--
 TSfame-2011.3-1/TSfame/tests/TSfame.R     |    6 ++++++
 8 files changed, 26 insertions(+), 19 deletions(-)

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Package TSdbi updated to version 2011.3-1 with previous version 2010.12-1 dated 2010-12-22

Title: Time Series Database Interface
Description: TSdbi provides a common interface to time series databases. The objective is to define a standard interface so users can retrieve time series data from various sources with a simple, common, set of commands, and so programs can be written to be portable with respect to the data source. The SQL implementations also provide a database table design, so users needing to set up a time series database have a reasonably complete way to do this easily. The interface provides for a variety of options with respect to the representation of time series in R. There is also a (not yet well tested) mechanism to handle multilingual data documentation.
Author: Paul Gilbert
Maintainer: Paul Gilbert

Diff between TSdbi versions 2010.12-1 dated 2010-12-22 and 2011.3-1 dated 2011-03-23

 DESCRIPTION        |   12 ++++++------
 NEWS               |    9 +++++++++
 R/TSdbi.R          |   10 ++++++----
 inst/doc/Guide.pdf |binary
 man/TSget.Rd       |   20 ++++++++++++++------
 5 files changed, 35 insertions(+), 16 deletions(-)

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Package TSSQLite updated to version 2011.3-1 with previous version 2010.12-1 dated 2010-12-22

Title: Time Series Database Interface extentions for SQLite
Description: TSSQLite provides a SQLite interface for TSdbi.
Author: Paul Gilbert
Maintainer: Paul Gilbert

Diff between TSSQLite versions 2010.12-1 dated 2010-12-22 and 2011.3-1 dated 2011-03-23

 DESCRIPTION        |   10 +++++-----
 NEWS               |    4 ++++
 inst/doc/Guide.pdf |binary
 3 files changed, 9 insertions(+), 5 deletions(-)

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Package RcppArmadillo updated to version 0.2.17 with previous version 0.2.16 dated 2011-03-11

Title: Rcpp integration for Armadillo templated linear algebra library
Description: R and Armadillo integration using Rcpp Armadillo is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. A delayed evaluation approach is employed (during compile time) to combine several operations into one, and to reduce (or eliminate) the need for temporaries. This is accomplished through recursive templates and template meta-programming. This library is useful if C++ has been decided as the language of choice (due to speed and/or integration capabilities), rather than another language. The RcppArmadillo package includes the header files from the templated Armadillo library (currently version 1.1.90). Thus users do not need to install Armadillo itself in order to use RcppArmadillo. This Armadillo integration provides a nice illustration of the capabilities of the Rcpp package for seamless R and C++ integration. Armadillo is licensed under the GNU LGPL version 3 or later, while RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is licenses under the GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Romain Francois, Dirk Eddelbuettel and Doug Bates

Diff between RcppArmadillo versions 0.2.16 dated 2011-03-11 and 0.2.17 dated 2011-03-23

 ChangeLog                                               |    6 
 DESCRIPTION                                             |    8 
 inst/NEWS                                               |    7 
 inst/doc/RcppArmadillo-unitTests.pdf                    |binary
 inst/doc/unitTests-results/RcppArmadillo-unitTests.html |    6 
 inst/doc/unitTests-results/RcppArmadillo-unitTests.txt  |   36 +-
 inst/include/armadillo_bits/Cube_meat.hpp               |  112 ++++++++-
 inst/include/armadillo_bits/Cube_proto.hpp              |   14 -
 inst/include/armadillo_bits/Mat_meat.hpp                |   98 +++++++
 inst/include/armadillo_bits/Mat_proto.hpp               |   10 
 inst/include/armadillo_bits/arma_version.hpp            |    4 
 inst/include/armadillo_bits/fn_prod.hpp                 |   12 
 inst/include/armadillo_bits/fn_stddev.hpp               |   18 -
 inst/include/armadillo_bits/fn_var.hpp                  |   18 -
 inst/include/armadillo_bits/glue_mixed_meat.hpp         |   22 -
 inst/include/armadillo_bits/op_max_meat.hpp             |  199 ++++++++++------
 inst/include/armadillo_bits/op_max_proto.hpp            |   21 +
 inst/include/armadillo_bits/op_mean_meat.hpp            |  154 +++++++++++-
 inst/include/armadillo_bits/op_mean_proto.hpp           |   22 +
 inst/include/armadillo_bits/op_min_meat.hpp             |  199 ++++++++++------
 inst/include/armadillo_bits/op_min_proto.hpp            |   19 +
 inst/include/armadillo_bits/op_stddev_meat.hpp          |   44 ++-
 inst/include/armadillo_bits/op_stddev_proto.hpp         |    9 
 inst/include/armadillo_bits/op_var_meat.hpp             |  198 +++++++++++----
 inst/include/armadillo_bits/op_var_proto.hpp            |   14 -
 25 files changed, 925 insertions(+), 325 deletions(-)

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