Title: Various programming utilities
Diff between R.utils versions 1.7.3 dated 2011-04-04 and 1.7.4 dated 2011-04-04
Description: This package provides utility classes and methods useful
when programming in R and developing R packages.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 10 +++++-----
R/hpaste.R | 35 +++++++++++++++++++++--------------
incl/hpaste.Rex | 31 +++++++++++++++++++++++--------
inst/NEWS | 5 +++++
man/hpaste.Rd | 53 ++++++++++++++++++++++++++++++++++++-----------------
5 files changed, 90 insertions(+), 44 deletions(-)
Title: Easy handling of and access to files organized in structured
directories
Diff between R.filesets versions 0.9.7 dated 2011-03-14 and 0.9.9 dated 2011-04-04
Description: A file set refers to a set of files located in one or more
directories on the file system. This package provides classes
and methods to locate, setup, subset, navigate and iterate
suchs sets. The API is designed such that these classes can be
subsetted to provide a richer API for special file formats.
Moreover, a specific name format is defined such that filenames
and directories can be considered to have fullnames which
consists of a name followed by comma-separated tags. This adds
additional flexibility to identify file sets and individual
files. NOTE: This package's API should be considered to be in
an beta stage. Its main purpose is currently to support the
aroma.* packages, where it is one of the main core components;
if you decide to build on top of this package, please contact
the author first.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
R.filesets-0.9.7/R.filesets/inst/testScripts |only
R.filesets-0.9.9/R.filesets/DESCRIPTION | 14 +++------
R.filesets-0.9.9/R.filesets/R/GenericDataFile.R | 9 ++++-
R.filesets-0.9.9/R.filesets/R/GenericDataFileSet.R | 5 ---
R.filesets-0.9.9/R.filesets/R/GenericDataFileSetList.R | 17 +----------
R.filesets-0.9.9/R.filesets/R/TabularTextFile.R | 26 +++++++++++++----
R.filesets-0.9.9/R.filesets/inst/NEWS | 11 +++++++
7 files changed, 49 insertions(+), 33 deletions(-)
Title: Summary of Population Pharmacokinetic Analysis
Diff between popPK versions 1.02 dated 2011-02-11 and 1.03 dated 2011-04-04
Description: This package uses xpose4 to create standard graphs and
tables for NONMEM runs.
Author: Christoffer W. Tornoe
Maintainer: FDA Pharmacometrics
DESCRIPTION | 10 ++--
R/popPK.R | 123 ++++++++++++++++++++++++++++-------------------------------
man/popPK.Rd | 2
3 files changed, 65 insertions(+), 70 deletions(-)
More information about IndependenceTests at CRAN
Permanent link
Title: HumMeth27QCReport: quality control and preprocessing of
Illumina's Infinium methylation assays.
Diff between HumMeth27QCReport versions 1.1.1 dated 2010-11-24 and 1.2.8 dated 2011-04-04
More information about HumMeth27QCReport at CRAN
Description: HumMeth27QCReport is a tool for quality control and
preprocessing of Illumina's Infinium BeadChip methylation
assays. The automated analysis pipeline comprises data import,
normalization, quality diagnostics and data export.
Author: F.M. Mancuso, G. Roma
Maintainer: F.M. Mancuso
HumMeth27QCReport-1.1.1/HumMeth27QCReport/inst/DemoData |only
HumMeth27QCReport-1.1.1/HumMeth27QCReport/man/QCRep.Rd |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/DESCRIPTION | 25
HumMeth27QCReport-1.2.8/HumMeth27QCReport/NAMESPACE | 12
HumMeth27QCReport-1.2.8/HumMeth27QCReport/R/HumMeth27QCReport.r | 950 +++++-----
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/NEWS |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/.Rhistory | 483 +----
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/ExplorativeAnalysis_Page_1.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/ExplorativeAnalysis_Page_2.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/HumMeth27QCReport.Rnw | 353 ++-
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/HumMeth27QCReport.pdf |binary
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/InternalControl_Page_01.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/InternalControl_Page_02.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/InternalControl_Page_03.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/InternalControl_Page_04.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/InternalControl_Page_05.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/InternalControl_Page_06.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/InternalControl_Page_07.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/InternalControl_Page_08.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/InternalControl_Page_09.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/InternalControl_Page_10.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/InternalControl_Page_11.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/InternalControl_Page_12.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/QualityCheck_Page_1.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/QualityCheck_Page_2.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/doc/QualityCheck_Page_3.png |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/inst/extdata |only
HumMeth27QCReport-1.2.8/HumMeth27QCReport/man/HumMeth27QCReport.Rd | 27
HumMeth27QCReport-1.2.8/HumMeth27QCReport/man/NormCheck.Rd | 18
HumMeth27QCReport-1.2.8/HumMeth27QCReport/man/QCCheck.Rd | 15
HumMeth27QCReport-1.2.8/HumMeth27QCReport/man/getAssayControls.Rd |only
31 files changed, 982 insertions(+), 901 deletions(-)
Permanent link
Title: Sequences and trajectories mining for social scientists
Diff between TraMineR versions 1.8 dated 2011-03-17 and 1.8-1 dated 2011-04-04
Description: This package is a toolbox for sequence manipulation,
description, rendering and more generally sequence data mining
in the field of social sciences. Though it is primarily
intended for analyzing state or event sequences that describe
life courses such as family formation histories or professional
careers its features apply indeed also to many other kinds of
categorical sequence data. It accepts as input many different
sequence representations and provides tools for translating
sequences from one format to another. It offers several
statistical functions for describing and rendering sequences,
for computing distances between sequences with different
metrics among which optimal matching, the longest common prefix
and the longest common subsequence, and simple functions for
extracting the most frequent subsequences and identifying the
most discriminating ones among them. A user's guide can be
found on TraMineR's web page.
Author: Alexis Gabadinho
Maintainer: Alexis Gabadinho
DESCRIPTION | 8 +++---
inst/CITATION | 54 ++++++++++++++++++++++++++-----------------
man/TraMineR.checkupdates.Rd | 4 +--
man/dissrep.Rd | 10 +++----
man/plot.stslist.rep.Rd | 7 +----
man/seqLLCP.Rd | 2 -
man/seqLLCS.Rd | 2 -
man/seqdef.Rd | 8 +++---
man/seqdist.Rd | 40 +++++++++++--------------------
man/seqici.Rd | 5 +++
man/seqient.Rd | 4 ++-
man/seqistatd.Rd | 6 ++++
man/seqmeant.Rd | 4 +++
man/seqmodst.Rd | 5 +++
man/seqstatl.Rd | 11 +++++++-
man/seqsubm.Rd | 7 +++--
man/seqtab.Rd | 5 +++
man/seqtransn.Rd | 5 +++
man/seqtrate.Rd | 4 +++
19 files changed, 118 insertions(+), 73 deletions(-)
Title: Bayesian Nonparametric and Semiparametric Analysis
Diff between DPpackage versions 1.1-2 dated 2010-10-02 and 1.1-3 dated 2011-04-04
Description: This package contains functions to perform inference via
simulation from the posterior distributions for Bayesian
nonparametric and semiparametric models. Although the name of
the package was motivated by the Dirichlet Process prior, the
package considers and will consider other priors on functional
spaces. So far, DPpackage includes models considering Dirichlet
Processes, Dependent Dirichlet Processes, Dependent Poisson-
Dirichlet Processes, Hierarchical Dirichlet Processes, Polya
Trees, Mixtures of Triangular distributions, and Random
Bernstein polynomials priors. The package also includes models
considering Penalized B-Splines. Currently the package includes
semiparametric models for marginal and conditional density
estimation, ROC curve analysis, interval censored data, binary
regression models, generalized linear mixed models, IRT type
models, and generalized additive models. The package also
contains functions to compute Pseudo-Bayes factors for model
comparison, and to elicitate the precision parameter of the
Dirichlet Process. To maximize computational efficiency, the
actual sampling for each model is done in compiled FORTRAN. The
functions return objects which can be subsequently analyzed
with functions provided in the coda package.
Author: Alejandro Jara
Maintainer: Alejandro Jara
DESCRIPTION | 8 ++++----
LICENSE | 2 +-
NAMESPACE | 3 ++-
R/BDPdensity.R | 8 ++++----
R/DPMrasch.R | 5 ++++-
R/DPMraschpoisson.R | 7 ++++++-
R/DPrasch.R | 5 ++++-
R/DPraschpoisson.R | 5 ++++-
R/FPTrasch.R | 7 +++++--
R/FPTraschpoisson.R | 9 ++++++---
R/hidden.R | 6 +++---
inst/CITATION | 48 ++++++++++++++++++++++++++++++++++++------------
man/DPMrasch.Rd | 8 ++++----
man/DPMraschpoisson.Rd | 6 +++---
man/DPrandom.Rd | 2 +-
man/DPrasch.Rd | 6 +++---
man/DPraschpoisson.Rd | 6 +++---
man/FPTbinary.Rd | 3 ++-
man/FPTrasch.Rd | 14 +++++++-------
man/FPTraschpoisson.Rd | 14 +++++++-------
man/LDPDdoublyint.Rd | 2 +-
man/PTglmm.Rd | 4 ++--
man/PTlmm.Rd | 6 +++---
man/PTmeta.Rd | 6 +++---
man/PTolmm.Rd | 6 +++---
man/PTsampler.Rd | 4 ++--
man/Pbinary.Rd | 2 +-
man/hiv.Rd | 4 ++--
src/DPMrasch.f | 12 +++++++++---
src/DPMraschpoisson.f | 8 +++++++-
src/DPMraschpoissonh.f | 10 ++++++++--
src/DPrasch.f | 19 +++++++++++++------
src/DPraschpoisson.f | 18 ++++++++++++------
src/PTrasch.f | 8 ++++++--
src/PTraschpoisson.f | 14 +++++++++-----
35 files changed, 190 insertions(+), 105 deletions(-)
Title: statistical disclosure control for tabular data
Diff between sdcTable versions 0.6.0 dated 2011-02-10 and 0.6.4 dated 2011-04-04
Description: R-Package for statistical disclosure control for tabular
data.
Author: Bernhard Meindl
Maintainer: Bernhard Meindl
DESCRIPTION | 8 -
R/calcDimInfos.r | 248 ++++++++----------------------------------
R/calcFullTable.r | 17 +-
R/functions_HITAS_OPT_CHECK.r | 10 +
R/functions_strIndices.r | 28 ++++
R/protectLinkedTables.r | 43 +++----
R/protectTable.r | 110 +++++++++++-------
R/zzz.R | 2
data/levelObj.RData |binary
data/protectedData.RData |binary
man/calcDimInfos.Rd | 7 +
man/calcFullTable.Rd | 42 +++----
man/cellInfo.Rd | 14 +-
man/protectLinkedTables.Rd | 25 +++-
man/protectTable.Rd | 11 +
15 files changed, 245 insertions(+), 320 deletions(-)
Title: Stable Distribution Functions
Diff between stabledist versions 0.6-0 dated 2011-03-15 and 0.6-2.1 dated 2011-04-04
Description: Density, Probability and Quantile functions, and random
number generation for (skew) stable distributions, using the
parametrizations of Nolan.
Author: Diethelm Wuertz, Martin Maechler and Rmetrics core team
members.
Maintainer: Martin Maechler
ChangeLog | 45 +++
DESCRIPTION | 10
Done |only
R/dist-stableMode.R | 28 +-
R/dpqr-stable.R | 583 +++++++++++++++++++++++++++++++++----------------
TODO | 10
man/dist-stable.Rd | 52 +++-
man/dist-stableMode.Rd | 30 --
tests/dstab-ex.R | 114 +++++++++
tests/pstab-ex.R |only
tests/tails.R |only
11 files changed, 624 insertions(+), 248 deletions(-)
Title: SGP: An R Package for the Calculation and Visualization of
Student Growth Percentiles.
Diff between SGP versions 0.0-6.9 dated 2011-03-06 and 0.0-7.0 dated 2011-04-04
Description: Functions to calculate student growth percentiles and
percentile growth projections/trajectories for students using
large scale, longitudinal assessment data. Functions use
quantile regression to estimate the conditional density
associated with each student's achievement history. Percentile
growth projections/trajectories are calculated using the
coefficient matrices derived from the quantile regression
analyses and specify what percentile growth is required for
students to reach future achievement targets.
Author: Damian W. Betebenner
Maintainer: Damian W. Betebenner
DESCRIPTION | 32 ++--
LICENSE | 19 +-
R/abcSGP.R | 183 +++++++++++-------------
R/analyzeSGP.R | 21 +-
R/bubblePlot.R |only
R/combineSGP.R | 83 +++++++---
R/prepareSGP.R | 12 +
R/studentGrowthPercentiles.R | 68 ++++-----
R/studentGrowthPlot.R |only
R/studentGrowthProjections.R | 34 ++--
R/summarizeSGP.R | 302 ++++++++++++++++++++--------------------
R/viewSummaryGroups.R | 68 ++++-----
data/sgpData.rda |binary
data/sgpData_LONG.rda |binary
data/stateData.rda |binary
inst/CITATION | 28 +--
inst/NEWS | 260 +++++++++++++++++-----------------
man/SGP-package.Rd | 31 ++--
man/abcSGP.Rd | 40 +++--
man/analyzeSGP.Rd | 13 -
man/bubblePlot.Rd |only
man/combineSGP.Rd | 24 +--
man/prepareSGP.Rd | 4
man/sgpData.Rd | 4
man/sgpData_LONG.Rd | 18 +-
man/studentGrowthPercentiles.Rd | 6
man/studentGrowthPlot.Rd |only
man/summarizeSGP.Rd | 58 +++----
man/viewSummaryGroups.Rd | 37 ++--
29 files changed, 702 insertions(+), 643 deletions(-)
Title: Identification and Quantification of Metabolites by Using 1D 1H
NMR FID
Diff between IQMNMR versions 1.0 dated 2011-04-01 and 1.0.1 dated 2011-04-04
Description: Critical to metabolomics is the unambiguous identification
and absolute quantification of metabolites. One-dimensional
(1D) proton (1H) NMR has formed the bedrock of metabolomics
studies to date. Automated and high throughput identification
and quantification of metabolites is a big challenge for
One-dimensional (1D) proton (1H) NMR. This package present a
new automated technique based on Message Passing Interface
(MPI), relaxation algorithm, pattern identification, Madison
Metabolomics Consortium Database (MMCD), and 1D 1H NMR free
induction decay (FID), for the unambiguous identification and
absolute quantification of targeted metabolites.
Author: XuSong
Maintainer: Xu Song
DESCRIPTION | 10 +++++-----
R/NMR_spectra.R | 10 ++++++----
R/identify_quantify.R | 29 ++---------------------------
3 files changed, 13 insertions(+), 36 deletions(-)
Title: Whole Genome Average Interval Mapping for QTL detection using
mixed models
Diff between wgaim versions 0.99-4 dated 2011-02-07 and 0.99-4.2 dated 2011-04-04
Description: This package integrates sophisticated mixed modelling
methods with a whole genome approach to detecting significant
QTL's in linkage maps.
Author: Julian Taylor
Maintainer: Julian Taylor
DESCRIPTION | 8
R/wgaim.R | 42 +--
inst/extdata/raccas.csv | 555 +++++++++++++++++++++++++++++++++++++++---------
man/wgaim-internal.Rd | 2
4 files changed, 477 insertions(+), 130 deletions(-)
Title: Detection of disease-associated SNP interactions in case-parent
trio data
Diff between trio versions 1.1.17 dated 2011-01-03 and 1.1.22 dated 2011-04-04
Description: Testing SNPs and SNP interactions with a genotypic TDT.
This package furthermore contains functions for computing
pairwise values of LD measures and for identifying LD blocks,
as well as functions for setting up matched case pseudo-control
genotype data for case-parent trios in order to run trio logic
regreesion, to impute missing genotypes in trios, or to
simulate case-parent trios with disease risk dependent on SNP
interaction.
Author: Holger Schwender, Qing Li
Maintainer: Holger Schwender
DESCRIPTION | 9
NAMESPACE | 3
R/qingInternal.R | 894 +++++++++++++++++++++++++--------------------------
R/trio.R | 20 -
R/trio.check.R | 10
R/trio.permTest.R |only
R/trio.sim.R | 4
inst/doc/trio.Rnw | 70 +++
inst/doc/trio.pdf |binary
inst/plugin |only
man/colGxE.Rd | 3
man/colTDTmaxTest.Rd | 3
man/tdt.Rd | 4
man/tdt2way.Rd | 8
man/trio.Rd | 35 +
man/trio.check.Rd | 27 -
man/trio.permTest.Rd |only
man/trio.sim.Rd | 21 -
18 files changed, 593 insertions(+), 518 deletions(-)
Title: Scalable Robust Estimators with High Breakdown Point
Diff between rrcov versions 1.1-00 dated 2010-08-30 and 1.2-01 dated 2011-04-04
Description: Robust Location and Scatter Estimation and Robust
Multivariate Analysis with High Breakdown Point.
Author: Valentin Todorov
Maintainer: Valentin Todorov
rrcov-1.1-00/rrcov/inst/doc/Rplots.pdf |only
rrcov-1.2-01/rrcov/ChangeLog | 12
rrcov-1.2-01/rrcov/DESCRIPTION | 10
rrcov-1.2-01/rrcov/R/AllClasses.R | 6
rrcov-1.2-01/rrcov/R/CovMMest.R | 100
rrcov-1.2-01/rrcov/R/CovRobust.R | 4
rrcov-1.2-01/rrcov/R/CovSde.R | 7
rrcov-1.2-01/rrcov/R/CovSest.R | 144
rrcov-1.2-01/rrcov/R/Pca.R | 74
rrcov-1.2-01/rrcov/R/PcaClassic.R | 2
rrcov-1.2-01/rrcov/R/PcaCov.R | 2
rrcov-1.2-01/rrcov/R/PcaGrid.R | 11
rrcov-1.2-01/rrcov/R/PcaLocantore.R | 7
rrcov-1.2-01/rrcov/R/PcaProj.R | 5
rrcov-1.2-01/rrcov/data/maryo.rda |binary
rrcov-1.2-01/rrcov/data/wages.rda |only
rrcov-1.2-01/rrcov/inst/doc/rrcov.pdf |10915 ++++++++++++++-------------
rrcov-1.2-01/rrcov/man/CovMMest-class.Rd | 9
rrcov-1.2-01/rrcov/man/CovMMest.Rd | 6
rrcov-1.2-01/rrcov/man/CovSest-class.Rd | 4
rrcov-1.2-01/rrcov/man/CovSest.Rd | 8
rrcov-1.2-01/rrcov/man/PcaGrid-class.Rd | 6
rrcov-1.2-01/rrcov/man/PcaLocantore-class.Rd | 2
rrcov-1.2-01/rrcov/man/bushmiss.Rd | 25
rrcov-1.2-01/rrcov/man/wages.Rd |only
rrcov-1.2-01/rrcov/tests/thubert.Rout.save | 63
rrcov-1.2-01/rrcov/tests/tlda.Rout.save | 53
rrcov-1.2-01/rrcov/tests/tmcd4.R | 10
rrcov-1.2-01/rrcov/tests/tmcd4.Rout.save | 29
rrcov-1.2-01/rrcov/tests/tmest.Rout.save | 11
rrcov-1.2-01/rrcov/tests/tmest4.Rout.save | 7
rrcov-1.2-01/rrcov/tests/tmve4.Rout.save | 7
rrcov-1.2-01/rrcov/tests/togk4.Rout.save | 11
rrcov-1.2-01/rrcov/tests/tqda.Rout.save | 39
rrcov-1.2-01/rrcov/tests/tsde.Rout.save | 7
rrcov-1.2-01/rrcov/tests/tsest.Rout.save | 119
36 files changed, 6165 insertions(+), 5550 deletions(-)
Title: L-moments, Trimmed L-moments, L-comoments, Censored L-moments,
and Many Distributions
Diff between lmomco versions 1.3.2 dated 2011-03-15 and 1.3.3 dated 2011-04-04
Description: The package implements the statistical theory of L-moments
including L-moment estimation, probability-weighted moment
estimation, parameter estimation for numerous familiar and
not-so-familiar distributions, and L-moment estimation for the
same distributions from the parameters. L-moments are derived
from the expectations of order statistics and are linear with
respect to the probability-weighted moments; choice of either
can be made by mathematical convenience. L-moments are directly
analogous to the well-known product moments; however, L-moments
have many advantages including unbiasedness, robustness, and
consistency with respect to the product moments. The method of
L-moments can out perform the method of maximum likelihood. The
lmomco package historically is oriented around canonical
FORTRAN algorithms of J.R.M. Hosking, and the nomenclature for
many of the functions parallels that of the Hosking library,
which later became available in the lmom package. However, vast
arrays of various extensions and curiosities are added by the
author to aid and expand of the breadth of L-moment
application. Such extensions include venerable statistics as
Sen weighted mean, Gini mean difference, plotting positions,
and conditional probability adjustment. Much extension of
L-moment theory has occurred in recent years, including
extension of L-moments into right-tail and left-tail censoring
by known or unknown censoring threshold and also by indicator
variable. E.A.H. Elamir and A.H. Seheult have developed the
trimmed L-moments, which are implemented in this package.
Further, Robert Serfling and Peng Xiao have extended L-moments
into multivariate space; the so-called sample L-comoments are
implemented here and might have considerable application in
copula theory because they measure asymmetric correlation and
higher co-moments. The supported distributions with moment type
shown as L (L-moments) or TL (trimmed L-moments) and additional
support for right-tail censoring ([RC]) include: Cauchy (TL),
Exponential (L), Gamma (L), Generalized Extreme Value (L),
Generalized Lambda (L & TL), Generalized Logistic (L),
Generalized Normal (L), Generalized Pareto (L[RC] & TL), Gumbel
(L), Kappa (L), Kumaraswamy (L), Normal (L), 3-parameter
log-Normal (L), Pearson Type III (L), Rayleigh (L), Reverse
Gumbel (L[RC]), Rice/Rician (L), Truncated Exponential (L),
Wakeby (L), and Weibull (L).
Author: William H. Asquith
Maintainer: William H. Asquith
ChangeLog | 9 ++++++++-
DESCRIPTION | 6 +++---
R/cdfln3.R | 4 ++--
R/lmrdiscord.R |only
R/parln3.R | 8 ++++----
R/plotlmrdia.R | 6 +++---
inst/doc/SysDataBuilder.R | 28 ++++++++++++++++++++++++++--
man/lmrdiscord.Rd |only
man/parln3.Rd | 2 +-
9 files changed, 47 insertions(+), 16 deletions(-)
Title: Lattice Graphics
Diff between lattice versions 0.19-17 dated 2011-01-05 and 0.19-23 dated 2011-04-04
Description: Lattice is a powerful and elegant high-level data
visualization system, with an emphasis on multivariate data,
that is sufficient for typical graphics needs, and is also
flexible enough to handle most nonstandard requirements. See
?Lattice for an introduction.
Author: Deepayan Sarkar
Maintainer: Deepayan Sarkar
lattice-0.19-17/lattice/data/barley.R |only
lattice-0.19-17/lattice/data/environmental.R |only
lattice-0.19-17/lattice/data/ethanol.R |only
lattice-0.19-17/lattice/data/melanoma.R |only
lattice-0.19-17/lattice/data/singer.R |only
lattice-0.19-23/lattice/DESCRIPTION | 8
lattice-0.19-23/lattice/NEWS | 13
lattice-0.19-23/lattice/R/cloud.R | 12
lattice-0.19-23/lattice/R/legend.R | 312 +++++-------
lattice-0.19-23/lattice/R/miscellaneous.R | 9
lattice-0.19-23/lattice/R/panels.R | 128 +++-
lattice-0.19-23/lattice/R/scales.R | 9
lattice-0.19-23/lattice/R/xyplot.ts.R | 41 -
lattice-0.19-23/lattice/SvnLog | 212 ++++++++
lattice-0.19-23/lattice/data/barley.rda |only
lattice-0.19-23/lattice/data/environmental.rda |only
lattice-0.19-23/lattice/data/ethanol.rda |only
lattice-0.19-23/lattice/data/melanoma.rda |only
lattice-0.19-23/lattice/data/singer.rda |only
lattice-0.19-23/lattice/inst/po/de/LC_MESSAGES/R-lattice.mo |binary
lattice-0.19-23/lattice/man/llines.Rd | 11
lattice-0.19-23/lattice/man/panel.cloud.Rd | 5
lattice-0.19-23/lattice/man/panel.functions.Rd | 12
lattice-0.19-23/lattice/po/R-de.po | 22
lattice-0.19-23/lattice/po/R-lattice.pot | 4
25 files changed, 534 insertions(+), 264 deletions(-)
Title: Estimate inverse probability weights.
Diff between ipw versions 1.0-8 dated 2010-09-30 and 1.0-9 dated 2011-04-04
Description: Estimate inverse probability weights. These are typically
used to perform inverse probability weighting (IPW) to fit a
marginal structural model (MSM), to estimate causal effects
from observational data. Both data from point treatment
situations and longitudinal studies can be used.
Author: Willem M. van der Wal
Maintainer: Willem M. van der Wal
DESCRIPTION | 8 +++---
R/ipwpoint.R | 20 ++++++++--------
R/ipwtm.R | 66 ++++++++++++++++++++++++++++++++++++++++++------------
data/haartdat.rda |binary
ipw-Ex.R |only
man/ipwpoint.Rd | 6 ++--
man/ipwtm.Rd | 41 ++++++++++++++++++++++++---------
7 files changed, 99 insertions(+), 42 deletions(-)
Title: geostatistical modelling, prediction and simulation
Diff between gstat versions 0.9-79 dated 2011-03-15 and 0.9-80 dated 2011-04-04
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator
(co)simulation; variogram and variogram map plotting utility
functions.
Author: Edzer Pebesma
Maintainer: Edzer Pebesma
DESCRIPTION | 8 ++++----
R/gstat.formula.predict.R | 2 +-
R/predict.gstat.R | 12 +++++++++---
inst/doc/gstat.pdf |binary
4 files changed, 14 insertions(+), 8 deletions(-)
Title: Dive analysis and calibration
Diff between diveMove versions 1.2.4 dated 2011-03-01 and 1.2.5 dated 2011-04-04
Description: Utilities to represent, visualize, filter, analyse, and
summarize time-depth recorder (TDR) data. Miscellaneous
functions for handling location data are also provided.
Author: Sebastian P. Luque
Maintainer: Sebastian P. Luque
diveMove-1.2.4/diveMove/data/dives.csv |only
diveMove-1.2.4/diveMove/data/sealLocs.csv |only
diveMove-1.2.5/diveMove/ChangeLog | 53 +++
diveMove-1.2.5/diveMove/DESCRIPTION | 8
diveMove-1.2.5/diveMove/NAMESPACE | 7
diveMove-1.2.5/diveMove/NEWS | 16 +
diveMove-1.2.5/diveMove/R/AllGenerics.R | 8
diveMove-1.2.5/diveMove/R/AllMethod.R | 40 ++
diveMove-1.2.5/diveMove/R/bouts.R | 377 +++++++++++++++++++++---
diveMove-1.2.5/diveMove/R/readLocs.R | 27 -
diveMove-1.2.5/diveMove/R/readTDR.R | 21 -
diveMove-1.2.5/diveMove/data/dives.csv.gz |only
diveMove-1.2.5/diveMove/data/divesTDR.RData |binary
diveMove-1.2.5/diveMove/data/sealLocs.csv.gz |only
diveMove-1.2.5/diveMove/inst/doc/Makefile | 11
diveMove-1.2.5/diveMove/inst/doc/diveMove.Rnw | 23 -
diveMove-1.2.5/diveMove/inst/doc/diveMove.pdf |binary
diveMove-1.2.5/diveMove/inst/doc/tcltk.png |only
diveMove-1.2.5/diveMove/man/austFilter.Rd | 10
diveMove-1.2.5/diveMove/man/bout-methods.Rd | 20 -
diveMove-1.2.5/diveMove/man/bout-misc.Rd | 45 +-
diveMove-1.2.5/diveMove/man/bouts2MLE.Rd | 24 +
diveMove-1.2.5/diveMove/man/bouts2NLS.Rd | 19 -
diveMove-1.2.5/diveMove/man/bouts3NLS.Rd |only
diveMove-1.2.5/diveMove/man/distSpeed.Rd | 9
diveMove-1.2.5/diveMove/man/diveMove-package.Rd | 8
diveMove-1.2.5/diveMove/man/dives.Rd | 9
diveMove-1.2.5/diveMove/man/readLocs.Rd | 10
diveMove-1.2.5/diveMove/man/readTDR.Rd | 21 -
diveMove-1.2.5/diveMove/man/sealLocs.Rd | 8
diveMove-1.2.5/diveMove/tests/calibrations.R | 6
diveMove-1.2.5/diveMove/tests/class-tests.R | 33 +-
diveMove-1.2.5/diveMove/tests/final-stats.R | 13
33 files changed, 651 insertions(+), 175 deletions(-)
Title: GUI Tool for Data Management like SPSS or Stata
Diff between Rz versions 0.2-0 dated 2011-04-03 and 0.2-1 dated 2011-04-04
Description: R is very powerfull but not enough for social science
becouse of lack in some functionality for managing survey data
SPSS or Stata provides. Memisc package supplements those,
variable labels, value labels, definable missing values and so
on, but to efficiently work these functions need graphical
interface to overlook data. This package provides such
graphical interface similar to SPSS's Variable View and data
managing system using memisc package as backend.
Author: Masahiro Hayashi
Maintainer: Masahiro Hayashi
DESCRIPTION | 10 +++++-----
NAMESPACE | 2 +-
R/functions.R | 10 ++++++----
3 files changed, 12 insertions(+), 10 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Diff between RcppArmadillo versions 0.2.17 dated 2011-03-23 and 0.2.18 dated 2011-04-04
Description: R and Armadillo integration using Rcpp Armadillo is a
templated C++ linear algebra library (by Conrad Sanderson) that
aims towards a good balance between speed and ease of use.
Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions.
Various matrix decompositions are provided through optional
integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to
combine several operations into one, and to reduce (or
eliminate) the need for temporaries. This is accomplished
through recursive templates and template meta-programming.
This library is useful if C++ has been decided as the language of
choice (due to speed and/or integration capabilities), rather
than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 1.1.92). Thus users do not
need to install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++
integration.
Armadillo is licensed under the GNU LGPL version 3 or later, while
RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is
licenses under the GNU GPL version 2 or later, as is the rest
of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Romain Francois, Dirk Eddelbuettel and Doug Bates
ChangeLog | 8 ++
DESCRIPTION | 10 +--
inst/NEWS | 7 ++
inst/doc/Makefile | 2
inst/doc/RcppArmadillo-unitTests.tex |only
inst/include/armadillo_bits/Cube_meat.hpp | 12 ---
inst/include/armadillo_bits/Cube_proto.hpp | 4 -
inst/include/armadillo_bits/Mat_meat.hpp | 2
inst/include/armadillo_bits/Mat_proto.hpp | 4 -
inst/include/armadillo_bits/arma_version.hpp | 4 -
inst/include/armadillo_bits/glue_cor_meat.hpp | 83 ++++++++++++--------------
11 files changed, 73 insertions(+), 63 deletions(-)
Title: R interface to the QuantLib library
Diff between RQuantLib versions 0.3.6 dated 2011-02-23 and 0.3.7 dated 2011-04-04
Description: The RQuantLib package makes parts of QuantLib visible to
the R user. Currently a number option pricing functions are
included, both vanilla and exotic, as well as a broad range of
fixed-income functions. Also included are general calendaring
and holiday utilities. Further software contributions are
welcome.
The QuantLib project aims to provide a comprehensive software framework
for quantitative finance. The goal is to provide a standard
open source library for quantitative analysis, modeling,
trading, and risk management of financial assets.
The Windows binary version is self-contained and does not require a
QuantLib (or Boost) installation.
RQuantLib uses the Rcpp R/C++ interface class library. See the Rcpp
package on CRAN (or R-Forge) for more information on Rcpp.
Note that while RQuantLib's code is licensed under the GPL (v2 or
later), QuantLib itself is released under a somewhat less
restrictive Open Source license (see QuantLib-License.txt).
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
ChangeLog | 13 +++++++++++++
DESCRIPTION | 8 ++++----
man/ConvertibleBond.Rd | 22 +++++++++++-----------
man/Enum.Rd | 6 +++---
man/FittedBondCurve.Rd | 2 +-
src/Makevars.win | 12 +++++++++---
tests/RQuantlib.Rout.save | 4 ++--
7 files changed, 43 insertions(+), 24 deletions(-)
Title: Various programming utilities
Diff between R.utils versions 1.7.2 dated 2011-03-24 and 1.7.3 dated 2011-04-04
Description: This package provides utility classes and methods useful
when programming in R and developing R packages.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
R.utils-1.7.2/R.utils/R/beta |only
R.utils-1.7.2/R.utils/R/devel |only
R.utils-1.7.3/R.utils/DESCRIPTION | 10 ++++------
R.utils-1.7.3/R.utils/R/deviceUtils.R | 5 ++++-
R.utils-1.7.3/R.utils/R/hpaste.R |only
R.utils-1.7.3/R.utils/incl/hpaste.Rex |only
R.utils-1.7.3/R.utils/inst/NEWS | 6 ++++++
R.utils-1.7.3/R.utils/man/Arguments.Rd | 2 +-
R.utils-1.7.3/R.utils/man/Assert.Rd | 2 +-
R.utils-1.7.3/R.utils/man/FileProgressBar.Rd | 2 +-
R.utils-1.7.3/R.utils/man/Java.Rd | 2 +-
R.utils-1.7.3/R.utils/man/LComments.Rd | 2 +-
R.utils-1.7.3/R.utils/man/MultiVerbose.Rd | 2 +-
R.utils-1.7.3/R.utils/man/NullVerbose.Rd | 2 +-
R.utils-1.7.3/R.utils/man/Options.Rd | 2 +-
R.utils-1.7.3/R.utils/man/ProgressBar.Rd | 2 +-
R.utils-1.7.3/R.utils/man/Settings.Rd | 2 +-
R.utils-1.7.3/R.utils/man/SmartComments.Rd | 2 +-
R.utils-1.7.3/R.utils/man/Sys.setenv.Rd |only
R.utils-1.7.3/R.utils/man/System.Rd | 2 +-
R.utils-1.7.3/R.utils/man/TextStatusBar.Rd | 2 +-
R.utils-1.7.3/R.utils/man/TimeoutException.Rd | 2 +-
R.utils-1.7.3/R.utils/man/VComments.Rd | 2 +-
R.utils-1.7.3/R.utils/man/Verbose.Rd | 2 +-
R.utils-1.7.3/R.utils/man/devEval.Rd | 2 +-
R.utils-1.7.3/R.utils/man/hpaste.Rd |only
26 files changed, 31 insertions(+), 24 deletions(-)
Title: R object-oriented programming with or without references
Diff between R.oo versions 1.7.5 dated 2011-02-03 and 1.8.0 dated 2011-04-04
Description: Methods and classes for object-oriented programming in R
with or without references. Large effort has been made on
making definition of methods as simple as possible with a
minimum of maintenance for package developers. The package has
been developed since 2001 and is now considered very stable.
This is a cross-platform package implemented in pure R that
defines standard S3 classes without any tricks.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 10 -
R/030.ObjectClassFunctions.R | 22 +++-
R/050.Object.R | 168 ++++++++++++++++++++++++++++----
R/999.NonDocumentedObjects.R | 3
R/BasicObject.R | 26 ++++
incl/gc.clearCache.Rex | 45 ++++++++
inst/NEWS | 20 +++
man/Class.Rd | 2
man/Exception.Rd | 4
man/InternalErrorException.Rd | 2
man/Non-documented_objects.Rd | 3
man/Object.Rd | 3
man/Package.Rd | 2
man/RccViolationException.Rd | 2
man/Rdoc.Rd | 2
man/RdocException.Rd | 2
man/clearCache.Object.Rd | 66 ++++++++++++
man/clearLookupCache.Object.Rd |only
man/getFieldModifiers.Object.Rd |only
man/getInstantiationTime.BasicObject.Rd | 9 -
man/getInstantiationTime.Object.Rd | 11 +-
21 files changed, 351 insertions(+), 51 deletions(-)
Title: Fast and light-weight caching (memoization) of objects
Diff between R.cache versions 0.4.0 dated 2011-02-15 and 0.4.1 dated 2011-04-04
Description: Methods for memoization, that is, caching arbitrary R
objects in persistent memory. Objects can be loaded and saved
stratified on a set of hashing objects.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 11 ++++++-----
R/999.NonDocumentedObjects.R | 3 +++
R/Object.getChecksum.R |only
R/clearCache.R | 9 +++++++--
R/evalWithMemoization.R |only
R/generateCache.R | 19 ++++++++++++-------
R/getChecksum.R |only
incl/evalWithMemoization.Rex |only
inst/NEWS | 11 +++++++++++
man/Non-documented_objects.Rd | 3 +++
man/evalWithMemoization.Rd |only
man/generateCache.Rd | 11 ++++++++---
man/getChecksum.Rd |only
13 files changed, 50 insertions(+), 17 deletions(-)
Title: MatchIt
Diff between MatchIt versions 2.4-16 dated 2011-01-10 and 2.4-17 dated 2011-04-04
Description: MatchIt preprocesses data by selecting approximate matched
samples of the treated and control groups with similar
covariate distributions, drawing on a large variety of matching
methods. After preprocessing data with MatchIt, whatever
standard parametric technique one might have used without
preprocessing can be used, but the results will be far less
model dependent.
Author: Daniel Ho
Maintainer: Kosuke Imai
DESCRIPTION | 8
inst/CITATION | 4
inst/doc/index.shtml | 2
inst/doc/matchit.log | 6
inst/doc/matchit.pdf | 1870 +++++++++++++++++++++++++--------------------------
inst/doc/matchit.tex | 1
man/match.data.Rd | 2
7 files changed, 936 insertions(+), 957 deletions(-)
Title: Software for Bayesian Inference
Diff between LaplacesDemon versions 11.03.27 dated 2011-03-28 and 11.04.04 dated 2011-04-04
Description: Laplace's Demon is software for Bayesian inference.
Author: Byron Hall
Maintainer: Byron Hall
CHANGELOG | 6
DESCRIPTION | 8
R/predict.demonoid.R | 2
R/predict.laplace.R | 8
inst/CITATION | 2
inst/doc/BayesianInference.pdf |binary
inst/doc/Examples.Stex | 489 ++
inst/doc/Examples.pdf | 7330 +++++++++++++++++++++++------------------
inst/doc/LaplacesDemon.Stex | 2
inst/doc/LaplacesDemon.pdf |binary
inst/doc/References.bib | 2
11 files changed, 4748 insertions(+), 3101 deletions(-)
Title: CORElearn - classification, regression, feature evaluation and
ordinal evaluation
Diff between CORElearn versions 0.9.33 dated 2011-03-26 and 0.9.34 dated 2011-04-04
Description: CORElearn is machine learning suite ported to R from
standalone C++ package. It contains several model learning
techniques in classification and regression, for example
classification and regression trees with optional constructive
induction and models in the leafs, random forests, kNN, naive
Bayes, and locally weighted regression. It is especially strong
in feature evaluation algorithms where it contains several
variants of Relief algorithm and many impurity based attribute
evaluation functions, e.g., Gini, information gain, MDL, DKM,
... Its additional strength is ordEval algorithm and its
visualization used for ordinal features and class. Several
algorithms support parallel multithreaded execution via OpenMP.
Windows binary versions supporting multithreading are available
on package website, as CRAN uses different toolchain. The top
level documentation is reachable through ?CORElearn.
Author: Marko Robnik-Sikonja
Maintainer: Marko Robnik-Sikonja
ChangeLog | 1 +
DESCRIPTION | 8 ++++----
src/Makevars | 1 +
src/estOrdAttr.cpp | 24 ++++++++++++------------
src/frontend.cpp | 2 +-
5 files changed, 19 insertions(+), 17 deletions(-)