Thu, 07 Apr 2011

Package REQS updated to version 0.8-12 with previous version 0.8-11 dated 2011-04-01

Title: R/EQS Interface
Description: This package contains the function run.eqs() which calls an EQS script file, executes the EQS estimation, and, finally, imports the results as R objects. These two steps can be performed separately: call.eqs() calls and executes EQS, whereas read.eqs() imports existing EQS outputs as objects into R. It requires EQS 6.2 (build 98 or higher).
Author: Patrick Mair, Eric Wu
Maintainer: Eric Wu

Diff between REQS versions 0.8-11 dated 2011-04-01 and 0.8-12 dated 2011-04-07

 DESCRIPTION  |    8 ++++----
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Package numConversion updated to version 0.1-1 with previous version 0.1-0 dated 2011-04-05

Title: Test of accuracy of as.character() for a numeric input using the standard arithmetic.
Description: The function check.as.character() creates pairs of close numbers, which should have a different character representation, and checks, whether they are converted to different values by as.character().
Author: Petr Savicky
Maintainer: Petr Savicky

Diff between numConversion versions 0.1-0 dated 2011-04-05 and 0.1-1 dated 2011-04-07

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Package geoR updated to version 1.6-34 with previous version 1.6-33 dated 2011-03-15

Title: Analysis of geostatistical data
Description: Geostatistical analysis including traditional, likelihood-based and Bayesian methods.
Author: Paulo J. Ribeiro Jr and Peter J. Diggle
Maintainer: Paulo J. Ribeiro Jr

Diff between geoR versions 1.6-33 dated 2011-03-15 and 1.6-34 dated 2011-04-07

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Package mnormt updated to version 1.4-1 with previous version 1.4-0 dated 2011-01-16

Title: The multivariate normal and t distributions
Description: This package provides functions for computing the density and the distribution function of multivariate normal and multivariate "t" variates, and for generating random vectors sampled from these distributions. Probabilities are computed via a non-Monte Carlo method; different routines are used for the case d=1, d=2, d>2, if d denotes the number of dimensions.
Author: Fortran code by Alan Genz, R code by Adelchi Azzalini
Maintainer: Adelchi Azzalini

Diff between mnormt versions 1.4-0 dated 2011-01-16 and 1.4-1 dated 2011-04-07

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Package interval updated to version 1.0-1.2 with previous version 1.0-1.1 dated 2010-10-21

Title: Weighted Logrank Tests and NPMLE for interval censored data
Description: Functions to fit nonparametric survival curves, plot them, and perform logrank or Wilcoxon type tests.
Author: Michael P. Fay
Maintainer: Michael P. Fay

Diff between interval versions 1.0-1.1 dated 2010-10-21 and 1.0-1.2 dated 2011-04-07

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Package microbenchmark updated to version 1.1-0 with previous version 1.0-2 dated 2011-01-17

Title: Sub microsecond accurate timing functions.
Description: Provides infrastructure to accurately measure and compare the execution time of R expressions.
Author: Olaf Mersmann
Maintainer: Olaf Mersmann

Diff between microbenchmark versions 1.0-2 dated 2011-01-17 and 1.1-0 dated 2011-04-07

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New package ffbase with initial version 0.2
Package: ffbase
Type: Package
Title: Basic statistical functions for package ff
Version: 0.2
Date: 2010-12-23
Author: Edwin de Jonge
Maintainer: Edwin de Jonge
Description: Implementation for min,max, mean, tabulate, table, with, within. for package ff
License: GPL-3
LazyLoad: yes
Depends: ff (>= 2.2-0)
Suggests: testthat
URL: http://code.google.com/p/fffunctions/
Collate: 'auxilary.R' 'chunkify.R' 'cut_ff.R' 'diff_ff.R' 'droplevels.R' 'ffappend.R' 'ffdfsave.R' 'mean.R' 'pkg.R' 'risplit.R' 'subset.R' 'Summary_ff.R' 'table_ff.R' 'tabulate_ff.R' 'transform.R' 'unique.R' 'with.R'
Packaged: 2011-04-07 12:40:14 UTC; ejne
Repository: CRAN
Date/Publication: 2011-04-07 13:15:15

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Package epoc updated to version 0.2.3-3 with previous version 0.2.3-2 dated 2011-04-06

Title: EPoC (Endogenous Perturbation analysis of Cancer)
Description: Estimates sparse matrices A or G using fast lasso regression from mRNA transcript levels Y and CNA profiles U. Two models are provided, EPoC A where AY + U + R = 0 and EPoC G where Y = GU + E, the matrices R and E are so far treated as noise. For details see the reference and the manual page of `lassoshooting'.
Author: Tobias Abenius
Maintainer: Tobias Abenius

Diff between epoc versions 0.2.3-2 dated 2011-04-06 and 0.2.3-3 dated 2011-04-07

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Package mhsmm updated to version 0.4.2 with previous version 0.4.0 dated 2011-03-06

Title: Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences.
Description: Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences. Suitable for equidistant time series data, with multivariate and/or missing data.
Author: Jared O'Connell , Søren Højsgaard
Maintainer: Jared O'Connell

Diff between mhsmm versions 0.4.0 dated 2011-03-06 and 0.4.2 dated 2011-04-07

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Package topicmodels updated to version 0.0-8 with previous version 0.0-7 dated 2010-09-22

Title: Topic models
Description: Provides an interface to the C code for Latent Dirichlet Allocation (LDA) models and Correlated Topics Models (CTM) by David M. Blei and co-authors and the C++ code for fitting LDA models using Gibbs sampling by Xuan-Hieu Phan and co-authors.
Author: Bettina Gruen and Kurt Hornik
Maintainer: Bettina Gruen

Diff between topicmodels versions 0.0-7 dated 2010-09-22 and 0.0-8 dated 2011-04-07

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Package tis updated to version 1.17 with previous version 1.15 dated 2010-11-27

Title: Time Indexes and Time Indexed Series
Description: Functions and S3 classes for time indexes and time indexed series, which are compatible with FAME frequencies.
Author: Jeff Hallman
Maintainer: Jeff Hallman

Diff between tis versions 1.15 dated 2010-11-27 and 1.17 dated 2011-04-07

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Package speedRlibs updated to version 1.1-27 with previous version 1.0-19 dated 2010-12-15

Title: Package containing the required libraries (jars) for speedR
Description: speedRlibs is a container for the required libraries (jars) by speedR. These libraries are packaged separately, because it is approximately 17 MB and will not be so often updated like speedR. Thus it reduces the download time after the first installation.
Author: Ilhami Visne
Maintainer: Ilhami Visne

Diff between speedRlibs versions 1.0-19 dated 2010-12-15 and 1.1-27 dated 2011-04-07

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Package speedRlibTF updated to version 0.3-27 with previous version 0.3-21 dated 2011-01-26

Title: speedR's table filter library
Description: This package contains the library "tablefilter", which is used by speedR.
Author: Ilhami Visne
Maintainer: Ilhami Visne

Diff between speedRlibTF versions 0.3-21 dated 2011-01-26 and 0.3-27 dated 2011-04-07

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Package seqinr updated to version 3.0-3 with previous version 3.0-1 dated 2010-11-15

Title: Biological Sequences Retrieval and Analysis
Description: Exploratory data analysis and data visualization for biological sequence (DNA and protein) data. Include also utilities for sequence data management under the ACNUC system.
Author: Delphine Charif and Jean R. Lobry and Anamaria Necsulea and Leonor Palmeira and Simon Penel
Maintainer: Simon Penel

Diff between seqinr versions 3.0-1 dated 2010-11-15 and 3.0-3 dated 2011-04-07

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Package infoDecompuTE updated to version 0.3.2 with previous version 0.3.1 dated 2011-03-28

Title: Information Decomposition of Two-phase Experiments
Description: InfoDecompuTE is capable of generating the structure of the analysis of variance (ANOVA) table of the two-phase experiments. By inputting the design and the relationships of the random and fixed factors using the Wilkinson-Rogers' syntax, infoDecompuTE can generate the structure of the ANOVA table with the coefficients of the variance components for the expected mean squares. This package can also study the balanced incomplete block design and provides the efficiency factors of the fixed effects.
Author: Kevin Chang and Katya Ruggiero
Maintainer: Kevin Chang

Diff between infoDecompuTE versions 0.3.1 dated 2011-03-28 and 0.3.2 dated 2011-04-07

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Package gmm updated to version 1.3-6 with previous version 1.3-5 dated 2011-03-27

Title: Generalized Method of Moments and Generalized Empirical Likelihood
Description: It is a complete suite to estimate models based on moment conditions. It includes the two step Generalized method of moments (GMM) of Hansen(1982), the iterated GMM and continuous updated estimator (CUE) of Hansen-Eaton-Yaron(1996) and several methods that belong to the Generalized Empirical Likelihood (GEL) family of estimators, as presented by Smith(1997), Kitamura(1997), Newey-Smith(2004) and Anatolyev(2005).
Author: Pierre Chausse
Maintainer: Pierre Chausse

Diff between gmm versions 1.3-5 dated 2011-03-27 and 1.3-6 dated 2011-04-07

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New package iWebPlots with initial version 0.1-0
Package: iWebPlots
Type: Package
Title: Interactive web-based scatter plots
Version: 0.1-0
Date: 2011-04-07
Author: Eleni Chatzimichali , Conrad Bessant
Maintainer: Eleni Chatzimichali
Description: The iWebPlots package provides methods for the creation of interactive web-based scatter plots, generated directly via the R statistical environment. Interactivity is implemented using the fundamental HTML image map technology, so no additional software such as applets or plug-ins is required. Additional features include dynamic tooltips and text annotations as well as asynchronous alternation between two- and three-dimensional scatter plots.
License: GPL (>= 2)
LazyLoad: yes
Depends: geneplotter, scatterplot3d
URL: http://www.cranfield.ac.uk/health/researchareas/bioinformatics/page53292.html
Packaged: 2011-04-07 08:17:59 UTC; elenachatzimichali
Repository: CRAN
Date/Publication: 2011-04-07 10:46:27

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Package fda updated to version 2.2.6 with previous version 2.2.5 dated 2010-09-22

Title: Functional Data Analysis
Description: These functions were developed to support functional data analysis as described in Ramsay, J. O. and Silverman, B. W. (2005) Functional Data Analysis. New York: Springer. They were ported from earlier versions in Matlab and S-PLUS. An introduction appears in Ramsay, J. O., Hooker, Giles, and Graves, Spencer (2009) Functional Data Analysis with R and Matlab (Springer). The package includes data sets and script files working many examples including all but one of the 76 figures in this latter book.
Author: J. O. Ramsay , Hadley Wickham , Spencer Graves , Giles Hooker
Maintainer: J. O. Ramsay

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More information about fda at CRAN
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Package fame updated to version 2.15 with previous version 2.13 dated 2011-01-06

Title: Interface for FAME time series database
Description: Read and write FAME databases.
Author: Jeff Hallman
Maintainer: Jeff Hallman

Diff between fame versions 2.13 dated 2011-01-06 and 2.15 dated 2011-04-07

 DESCRIPTION |    7 +++----
 NEWS        |    9 +++++++++
 R/fame.R    |    6 ++++--
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Package RcppClassic updated to version 0.9.1 with previous version 0.9.0 dated 2010-12-20

Title: Deprecated 'classic' Rcpp API
Description: The RcppClassic package provides a decrecated C++ library which facilitates the integration of R and C++. New project should use the new Rcpp API in the Rcpp package
Author: Dirk Eddelbuettel and Romain Francois, with contributions by David Reiss, and based on code written during 2005 and 2006 by Dominick Samperi
Maintainer: Dirk Eddelbuettel and Romain Francois

Diff between RcppClassic versions 0.9.0 dated 2010-12-20 and 0.9.1 dated 2011-04-07

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More information about RcppClassic at CRAN
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