Title: Semiparametric Bivariate Probit Modelling
Diff between SemiParBIVProbit versions 1.0-2 dated 2011-04-01 and 1.0-3 dated 2011-04-12
More information about SemiParBIVProbit at CRAN
Description: Routine for bivariate probit modelling with linear
predictors specified using parametric and nonparametric
components.
Author: Giampiero Marra
Maintainer: Giampiero Marra
ChangeLog | 4 ++-
DESCRIPTION | 6 ++--
R/AT.r | 10 +++-----
R/bprob.r | 2 -
R/plot.SemiParBIVProbit.r | 37 ++++++++++++++----------------
man/plot.SemiParBIVProbit.Rd | 49 +++++++++++++++++++---------------------
man/summary.SemiParBIVProbit.Rd | 3 --
man/working.comp.Rd | 3 --
8 files changed, 55 insertions(+), 59 deletions(-)
Permanent link
Title: Seamless R and C++ Integration
Diff between Rcpp versions 0.9.3 dated 2011-04-05 and 0.9.4 dated 2011-04-12
Description: The Rcpp package provides a C++ library which facilitates
the integration of R and C++.
R data types (SEXP) are matched to C++ objects in a class hierarchy.
All R types are supported (vectors, functions, environment, etc
...) and each type is mapped to a dedicated class. For
example, numeric vectors are represented as instances of the
Rcpp::NumericVector class, environments are represented as
instances of Rcpp::Environment, functions are represented as
Rcpp::Function, etc ... The "Rcpp-introduction" vignette
provides a good entry point to Rcpp.
Conversion from C++ to R and back is driven by the templates Rcpp::wrap
and Rcpp::as which are highly flexible and extensible, as
documented in the "Rcpp-extending" vignette.
Rcpp also provides Rcpp modules, a framework that allows exposing C++
functions and classes to the R level. The "Rcpp-modules"
vignette details the current set of features of Rcpp-modules.
Rcpp includes a concept called Rcpp sugar that brings many R functions
into C++. Sugar takes advantage of lazy evaluation and
expression templates to achieve great performance while
exposing a syntax that is much nicer to use than the equivalent
low-level loop code. The "Rcpp-sugar" vignette gives an
overview of the feature.
Several examples are included, and 751 unit tests in 336 unit test
functions provide additional usage examples.
An earlier version of Rcpp, containing what we now call the 'classic
Rcpp API' was written during 2005 and 2006 by Dominick Samperi.
This code has been factored out of Rcpp into the package
RcppClassic and it is still available for code relying on this
interface. New development should use this package instead.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by
Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel and Romain Francois
Rcpp-0.9.3/Rcpp/build |only
Rcpp-0.9.3/Rcpp/inst/skeleton/yada.Rd |only
Rcpp-0.9.3/Rcpp/inst/unitTests/testRcppModule/R/Modules.R |only
Rcpp-0.9.3/Rcpp/inst/unitTests/testRcppModule/man/yada.Rd |only
Rcpp-0.9.4/Rcpp/ChangeLog | 55
Rcpp-0.9.4/Rcpp/DESCRIPTION | 10
Rcpp-0.9.4/Rcpp/NAMESPACE | 29
Rcpp-0.9.4/Rcpp/R/Rcpp.package.skeleton.R | 11
Rcpp-0.9.4/Rcpp/R/loadRcppModules.R |only
Rcpp-0.9.4/Rcpp/inst/CITATION |only
Rcpp-0.9.4/Rcpp/inst/NEWS | 17
Rcpp-0.9.4/Rcpp/inst/doc/Makefile | 2
Rcpp-0.9.4/Rcpp/inst/doc/Rcpp-FAQ.pdf |binary
Rcpp-0.9.4/Rcpp/inst/doc/Rcpp-FAQ/Rcpp-FAQ.Rnw | 153 +-
Rcpp-0.9.4/Rcpp/inst/doc/Rcpp-extending.pdf |binary
Rcpp-0.9.4/Rcpp/inst/doc/Rcpp-extending/Rcpp-extending.Rnw | 2
Rcpp-0.9.4/Rcpp/inst/doc/Rcpp-introduction.Rnw | 734 ++++------
Rcpp-0.9.4/Rcpp/inst/doc/Rcpp-introduction.pdf |binary
Rcpp-0.9.4/Rcpp/inst/doc/Rcpp-modules.pdf |binary
Rcpp-0.9.4/Rcpp/inst/doc/Rcpp-modules/Rcpp-modules.Rnw | 36
Rcpp-0.9.4/Rcpp/inst/doc/Rcpp-package.pdf |binary
Rcpp-0.9.4/Rcpp/inst/doc/Rcpp-package/Rcpp-package.Rnw | 4
Rcpp-0.9.4/Rcpp/inst/doc/Rcpp-quickref.pdf |binary
Rcpp-0.9.4/Rcpp/inst/doc/Rcpp-quickref/Rcpp-quickref.Rnw | 34
Rcpp-0.9.4/Rcpp/inst/doc/Rcpp-sugar.pdf |binary
Rcpp-0.9.4/Rcpp/inst/doc/Rcpp-sugar/Rcpp-sugar.Rnw | 2
Rcpp-0.9.4/Rcpp/inst/doc/Rcpp-unitTests.pdf |binary
Rcpp-0.9.4/Rcpp/inst/doc/Rcpp.bib | 73
Rcpp-0.9.4/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.html | 18
Rcpp-0.9.4/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.txt | 40
Rcpp-0.9.4/Rcpp/inst/include/Rcpp/config.h | 2
Rcpp-0.9.4/Rcpp/inst/skeleton/zzz.R | 11
Rcpp-0.9.4/Rcpp/inst/unitTests/runit.Module.client.package.R | 27
Rcpp-0.9.4/Rcpp/inst/unitTests/runit.Vector.R | 18
Rcpp-0.9.4/Rcpp/inst/unitTests/testRcppModule/DESCRIPTION | 2
Rcpp-0.9.4/Rcpp/inst/unitTests/testRcppModule/NAMESPACE | 3
Rcpp-0.9.4/Rcpp/inst/unitTests/testRcppModule/R/zzz.R |only
Rcpp-0.9.4/Rcpp/inst/unitTests/testRcppModule/src/rcpp_module.cpp | 6
Rcpp-0.9.4/Rcpp/inst/unitTests/testRcppModule/src/stdVector.cpp | 18
Rcpp-0.9.4/Rcpp/inst/unitTests/testRcppModule/tests/modules.R | 21
Rcpp-0.9.4/Rcpp/man/Rcpp-package.Rd | 6
Rcpp-0.9.4/Rcpp/man/loadRcppModules.Rd |only
Rcpp-0.9.4/Rcpp/src/r_cast.cpp | 9
43 files changed, 647 insertions(+), 696 deletions(-)
Title: R based Twitter client
Diff between twitteR versions 0.99.0 dated 2011-03-31 and 0.99.2 dated 2011-04-12
Description: Provides an interface to the Twitter web API
Author: Jeff Gentry
Maintainer: Jeff Gentry
twitteR-0.99.0/twitteR/data |only
twitteR-0.99.2/twitteR/DESCRIPTION | 6 +++---
twitteR-0.99.2/twitteR/R/comm.R | 2 +-
twitteR-0.99.2/twitteR/inst/doc/twitteR.Rnw | 7 +++++--
twitteR-0.99.2/twitteR/inst/doc/twitteR.pdf |binary
twitteR-0.99.2/twitteR/man/registerTwitterOAuth.Rd | 12 ++++--------
6 files changed, 13 insertions(+), 14 deletions(-)
Title: Spatial dependence: weighting schemes, statistics and models
Diff between spdep versions 0.5-29 dated 2011-03-14 and 0.5-31 dated 2011-04-12
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by
distance and tesselations, for summarising these objects, and
for permitting their use in spatial data analysis, including
regional aggregation by minimum spanning tree; a collection of
tests for spatial autocorrelation, including global Moran's I,
APLE, Geary's C, Hubert/Mantel general cross product statistic,
Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G
and multicoloured join count statistics, local Moran's I and
Getis/Ord G, saddlepoint approximations and exact tests for
global and local Moran's I; and functions for estimating
spatial simultaneous autoregressive (SAR) lag and error models,
impact measures for lag models, weighted and unweighted SAR and
CAR spatial regression models, semi-parametric and Moran
eigenvector spatial filtering, GM SAR error models, and
generalized spatial two stage least squares models.
Author: Roger Bivand
Maintainer: Roger Bivand
spdep-0.5-29/spdep/data/datalist |only
spdep-0.5-29/spdep/data/wheat.txt.gz |only
spdep-0.5-31/spdep/ChangeLog | 16 +++
spdep-0.5-31/spdep/DESCRIPTION | 10 +-
spdep-0.5-31/spdep/NAMESPACE | 2
spdep-0.5-31/spdep/R/EBI.R | 2
spdep-0.5-31/spdep/R/geary.R | 7 -
spdep-0.5-31/spdep/R/kpgm_new.R | 148 +++++++++++++++++++++++------------
spdep-0.5-31/spdep/R/read.gwt2nb.R | 25 +++++
spdep-0.5-31/spdep/data/wheat.txt |only
spdep-0.5-31/spdep/inst/ChangeLog | 16 +++
spdep-0.5-31/spdep/inst/doc/CO69.pdf |binary
spdep-0.5-31/spdep/inst/doc/sids.pdf |binary
spdep-0.5-31/spdep/man/GMerrorsar.Rd | 11 +-
spdep-0.5-31/spdep/man/card.Rd | 6 +
spdep-0.5-31/spdep/man/cell2nb.Rd | 4
spdep-0.5-31/spdep/man/dnearneigh.Rd | 4
spdep-0.5-31/spdep/man/geary.mc.Rd | 4
spdep-0.5-31/spdep/man/graphneigh.Rd | 3
spdep-0.5-31/spdep/man/knn2nb.Rd | 4
spdep-0.5-31/spdep/man/nb2INLA.Rd |only
spdep-0.5-31/spdep/man/poly2nb.Rd | 4
spdep-0.5-31/spdep/spdep-Ex.R | 19 ++++
23 files changed, 210 insertions(+), 75 deletions(-)
Title: Tools for the analysis of air pollution data
Diff between openair versions 0.4-10 dated 2011-03-08 and 0.4-15 dated 2011-04-12
Description: Tools to analyse, interpret and understand air pollution
data. Data are typically hourly time series and both monitoring
data and dispersion model output can be analysed. Many
functions can also be applied to other data, including
meteorological and traffic data.
Author: David Carslaw and Karl Ropkins
Maintainer: David Carslaw
DESCRIPTION | 8
NAMESPACE | 2
NEWS | 41 ++
R/MannKendall.R | 45 +-
R/calcFno2.R | 3
R/checkPrep.R | 15
R/conditionalQuantile.R | 379 ++++++++++----------
R/importAURN.R | 3
R/importKCL.R | 2
R/kernelExceed.R | 14
R/linearRelation.R | 38 +-
R/openColours.R | 26 -
R/openair.generics.R | 4
R/percentileRose.R |only
R/polarAnnulus.R | 76 ++--
R/polarFreq.R | 80 ++--
R/polarPlot.R | 53 +-
R/scatterPlot.R | 101 +++--
R/selectRunning.R |only
R/smoothTrend.R | 19 -
R/summaryPlot.R | 24 +
R/timeAverage.R | 27 +
R/timePlot.R | 18
R/timeVariation.R | 12
R/trendLevel.R | 9
R/utilities.R | 46 +-
R/windRose.R | 82 ++--
man/MannKendall.Rd | 12
man/drawOpenKey.Rd | 2
man/importKCL.Rd | 907 +++++++++++++++++++++++-------------------------
man/linearRelation.Rd | 4
man/openColours.Rd | 8
man/openair-package.Rd | 18
man/percentileRose.Rd |only
man/polarAnnulus.Rd | 21 -
man/polarFreq.Rd | 9
man/polarPlot.Rd | 4
man/selectByDate.Rd | 8
man/selectRunning.Rd |only
man/smoothTrend.Rd | 8
man/summaryPlot.Rd | 4
man/windRose.Rd | 6
42 files changed, 1243 insertions(+), 895 deletions(-)
Title: High Dimensionnal Supervised Classification and Clustering
Diff between HDclassif versions 1.1.2 dated 2011-02-10 and 1.1.3 dated 2011-04-12
Description: New disciminant analysis and data clustering methods for
high dimensional data, based on the asumption that
high-dimensional data live in different subspaces with low
dimensionality proposing a new parametrization of the Gaussian
mixture model which combines the ideas of dimension reduction
and constraints on the model.
Author: L.Berge C.Bouveyron S.Girard
Maintainer: L.Berge
ChangeLog | 5 +++++
DESCRIPTION | 8 ++++----
R/hddc.R | 26 +++++++++++++++-----------
3 files changed, 24 insertions(+), 15 deletions(-)
Title: Analysis of Ecological Data : Exploratory and Euclidean methods
in Environmental sciences
Diff between ade4 versions 1.4-16 dated 2010-08-19 and 1.4-17 dated 2011-04-12
Description: Multivariate data analysis and graphical display.
Author: Daniel Chessel, Anne-Beatrice Dufour
Maintainer: Simon Penel
ChangeLog | 73 +++++++++++++++++++++++++++++++++++++
DESCRIPTION | 14 +++----
R/between.R | 50 +++++++++++++++----------
R/betweencoinertia.R | 80 ++++++++++++++++++++++-------------------
R/cailliez.R | 11 ++++-
R/dudi.R | 21 ++++++++++
R/is.euclid.R | 48 ++++++++++++------------
R/lingoes.R | 10 ++++-
R/mfa.R | 11 +++--
R/pcaiv.R | 2 -
R/quasieuclid.R | 13 +++---
R/within.R | 59 +++++++++++++++++-------------
R/withincoinertia.R | 93 ++++++++++++++++++++++++------------------------
R/withinpca.R | 10 ++---
data/macroloire.rda |binary
data/rhizobium.rda |binary
data/woangers.rda |binary
man/between.Rd | 47 ++++++++++++++----------
man/betweencoinertia.Rd | 21 ++++++----
man/cailliez.Rd | 4 +-
man/corvus.Rd | 4 +-
man/lingoes.Rd | 4 +-
man/mfa.Rd | 2 -
man/plot.between.Rd |only
man/plot.within.Rd |only
man/scatter.Rd | 77 +++++++++++++--------------------------
man/statis.Rd | 8 ++--
man/within.Rd | 66 +++++++++++++++++++---------------
man/withincoinertia.Rd | 25 +++++++-----
man/withinpca.Rd | 23 ++++++++---
30 files changed, 467 insertions(+), 309 deletions(-)
Title: Fast, simple RPC controller for R
Diff between triggr versions 0.1 dated 2011-04-05 and 0.2 dated 2011-04-12
Description: Triggr launches a server that gathers RNRN-terminated text
messages, executes arbitrary R function on them and sends back
the results in the same format. Communication is event-based
and delegated to a septate thread making triggr an efficient
solution for high-load tasks.
Author: Miron B. Kursa
Maintainer: Miron B. Kursa
DESCRIPTION | 6 +++---
src/Trigger.c | 2 --
src/code.c | 19 +------------------
3 files changed, 4 insertions(+), 23 deletions(-)
Title: Geographic analysis and modeling with raster data
Diff between raster versions 1.8-9 dated 2011-03-27 and 1.8-12 dated 2011-04-12
Description: Reading, writing, manipulating, analyzing and modeling of
gridded spatial data. The package implements basic and
high-level functions, as well as map algebra. Processing of
very large files is supported.
Author: Robert J. Hijmans & Jacob van Etten
Maintainer: Robert J. Hijmans
ChangeLog | 9 ++++++++-
DESCRIPTION | 8 ++++----
R/cellStats.R | 19 ++++++++++++++-----
R/flip.R | 15 ++++++++-------
R/focalFilter.R | 16 ++++++----------
R/overlayList.R | 26 +++++++++++++++++++-------
R/trim.R | 10 ++++++++++
R/writeStartStopGDAL.R | 25 +++++++++++++++----------
R/writeValues.R | 8 ++++++++
inst/doc/Raster.pdf |binary
inst/doc/functions.pdf |binary
inst/doc/rasterfile.pdf |binary
man/adjacency.Rd | 3 ++-
man/aggregate.Rd | 6 ++++--
man/boxplot.Rd | 2 +-
man/brick.Rd | 17 ++++++++++++-----
man/calc.Rd | 3 ++-
man/cellStats.Rd | 2 +-
man/focalFilter.Rd | 4 ++--
man/overlay.Rd | 10 +++++-----
man/raster-package.Rd | 8 ++++----
man/slopeAspect.Rd | 4 ++--
man/trim.Rd | 8 ++++----
23 files changed, 131 insertions(+), 72 deletions(-)
Title: Less Code, More Results
Diff between lessR versions 1.8.5 dated 2011-04-06 and 1.8.6 dated 2011-04-12
Description: Each function accomplishes the work of several or more
standard R functions. For example, two function calls, rad()
and full(), together read the csv data and generate descriptive
statistics for all variables in the data frame, plus histograms
and bar charts for all respective numerical and non-numerical
variables. The function smd.t.test introduces the ODDSMD plot,
which displays the Overlapping Density Distributions of two
independent groups as well as a visual display of the mean
difference and standardized mean difference. Other functions
provide for descriptive statistics, the t-test from descriptive
statistics, a comprehensive regression analysis, color
plotting, color bar chart, color histogram, color box plot,
density curves, a calibrated power curve plotted with colors,
and the reading and display of csv formatted data. The function
help.me provides a help system that suggests specific analyses
and functions.
Author: David W. Gerbing, School of Business Administration, Portland
State University
Maintainer: David W. Gerbing
DESCRIPTION | 8 -
R/color.plot.R | 420 +++++++++++++++++++++++++++++++-----------------------
man/color.plot.Rd | 66 ++++++--
3 files changed, 304 insertions(+), 190 deletions(-)
Title: Linear Predictive Models Based On The Liblinear C/C++ Library.
Diff between LiblineaR versions 1.80-0 dated 2011-04-11 and 1.80-1 dated 2011-04-12
Description: This R package is a wrapper around the liblinear C/C++
library for machine learning. LIBLINEAR is a linear classifier
for data with millions of instances and features. It supports
L2-regularized classifiers (such as L2-loss linear SVM, L1-loss
linear SVM, and logistic regression) as well as L1-regularized
classifiers (such as L2-loss linear SVM and logistic
regression). The main features of LiblineaR include multi-class
classification (one-vs-the rest, and Crammer & Singer method),
cross validation for model selection, probability estimates
(logistic regression only) or weights for unbalanced data. The
estimation of the models is particularly fast as compared to
other libraries. For more information on the C/C++ liblinear
library itself, refer to R.-E. Fan, K.-W. Chang, C.-J. Hsieh,
X.-R. Wang, and C.-J. Lin. LIBLINEAR: A Library for Large
Linear Classification, Journal of Machine Learning Research
9(2008), 1871-1874, available at
http://www.csie.ntu.edu.tw/~cjlin/liblinear . The two first
blocks of the package version indicates which version of
liblinear is currently supported. For example: 1.32-14 means
that the package supports the version 1.32 of liblinear.
Author: Thibault Helleputte
Maintainer: Thibault Helleputte
DESCRIPTION | 6 +++---
R/LiblineaR.R | 12 ++++++------
R/heuristicC.R | 2 +-
R/predict.R | 10 +++++-----
src/Makevars | 3 ++-
src/linear.cpp | 37 +++++++++++++++++++------------------
src/predictLinear.c | 6 +++---
src/trainLinear.c | 3 +--
8 files changed, 40 insertions(+), 39 deletions(-)